data_3P2H
#
_model_server_result.job_id            mnqIIKYs71MyifhfgaUTsA 
_model_server_result.datetime_utc      '2025-02-05 08:52:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p2h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":204}' 
#
_entry.id    3P2H 
#
_exptl.entry_id    3P2H 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              297.334 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3P2H 
_cell.length_a            66.1 
_cell.length_b            66.1 
_cell.length_c            104.2 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P2H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C11 H15 N5 O3 S' 
_chem_comp.formula_weight    297.334 
_chem_comp.id                MTA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-DEOXY-5'-METHYLTHIOADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CS S5' MTA sing 237 n n 
CS HCS1 MTA sing 238 n n 
CS HCS2 MTA sing 239 n n 
CS HCS3 MTA sing 240 n n 
S5' C5' MTA sing 241 n n 
C5' C4' MTA sing 242 n n 
C5' "H5'1" MTA sing 243 n n 
C5' "H5'2" MTA sing 244 n n 
C4' O4' MTA sing 245 n n 
C4' C3' MTA sing 246 n n 
C4' H4' MTA sing 247 n n 
O4' C1' MTA sing 248 n n 
C2' O2' MTA sing 249 n n 
C2' C3' MTA sing 250 n n 
C2' C1' MTA sing 251 n n 
C2' H2' MTA sing 252 n n 
O2' HO2' MTA sing 253 n n 
C3' O3' MTA sing 254 n n 
C3' H3' MTA sing 255 n n 
O3' H3T MTA sing 256 n n 
C1' N9 MTA sing 257 n n 
C1' H1' MTA sing 258 n n 
N9 C8 MTA sing 259 n y 
N9 C4 MTA sing 260 n y 
C8 N7 MTA doub 261 n y 
C8 H8 MTA sing 262 n n 
N7 C5 MTA sing 263 n y 
C5 C6 MTA sing 264 n y 
C5 C4 MTA doub 265 n y 
C6 N6 MTA sing 266 n n 
C6 N1 MTA doub 267 n y 
N6 H61 MTA sing 268 n n 
N6 H62 MTA sing 269 n n 
N1 C2 MTA sing 270 n y 
C2 N3 MTA doub 271 n y 
C2 H2 MTA sing 272 n n 
N3 C4 MTA sing 273 n y 
#
_atom_sites.entry_id                     3P2H 
_atom_sites.fract_transf_matrix[1][1]    0.015129 
_atom_sites.fract_transf_matrix[1][2]    0.008734 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017469 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009597 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MTA A 1 204 204 MTA MTA . 
C 3 NOO A 1 300 300 NOO NOO . 
D 4 HOH A 1 91 91 HOH HOH . 
D 4 HOH A 2 92 92 HOH HOH . 
D 4 HOH A 3 205 205 HOH HOH . 
D 4 HOH A 4 206 206 HOH HOH . 
D 4 HOH A 5 207 207 HOH HOH . 
D 4 HOH A 6 208 208 HOH HOH . 
D 4 HOH A 7 209 209 HOH HOH . 
D 4 HOH A 8 210 210 HOH HOH . 
D 4 HOH A 9 211 211 HOH HOH . 
D 4 HOH A 10 212 212 HOH HOH . 
D 4 HOH A 11 213 213 HOH HOH . 
D 4 HOH A 12 214 214 HOH HOH . 
D 4 HOH A 13 215 215 HOH HOH . 
D 4 HOH A 14 216 216 HOH HOH . 
D 4 HOH A 15 217 217 HOH HOH . 
D 4 HOH A 16 218 218 HOH HOH . 
D 4 HOH A 17 219 219 HOH HOH . 
D 4 HOH A 18 220 220 HOH HOH . 
D 4 HOH A 19 221 221 HOH HOH . 
D 4 HOH A 20 222 222 HOH HOH . 
D 4 HOH A 21 223 223 HOH HOH . 
D 4 HOH A 22 224 224 HOH HOH . 
D 4 HOH A 23 225 225 HOH HOH . 
D 4 HOH A 24 226 226 HOH HOH . 
D 4 HOH A 25 227 227 HOH HOH . 
D 4 HOH A 26 228 228 HOH HOH . 
D 4 HOH A 27 229 229 HOH HOH . 
D 4 HOH A 28 230 230 HOH HOH . 
D 4 HOH A 29 231 231 HOH HOH . 
D 4 HOH A 30 232 232 HOH HOH . 
D 4 HOH A 31 233 233 HOH HOH . 
D 4 HOH A 32 234 234 HOH HOH . 
D 4 HOH A 33 235 235 HOH HOH . 
D 4 HOH A 34 236 236 HOH HOH . 
D 4 HOH A 35 237 237 HOH HOH . 
D 4 HOH A 36 238 238 HOH HOH . 
D 4 HOH A 37 239 239 HOH HOH . 
D 4 HOH A 38 240 240 HOH HOH . 
D 4 HOH A 39 241 241 HOH HOH . 
D 4 HOH A 40 242 242 HOH HOH . 
D 4 HOH A 41 243 243 HOH HOH . 
D 4 HOH A 42 244 244 HOH HOH . 
D 4 HOH A 43 245 245 HOH HOH . 
D 4 HOH A 44 246 246 HOH HOH . 
D 4 HOH A 45 247 247 HOH HOH . 
D 4 HOH A 46 248 248 HOH HOH . 
D 4 HOH A 47 249 249 HOH HOH . 
D 4 HOH A 48 250 250 HOH HOH . 
D 4 HOH A 49 251 251 HOH HOH . 
D 4 HOH A 50 252 252 HOH HOH . 
D 4 HOH A 51 253 253 HOH HOH . 
D 4 HOH A 52 254 254 HOH HOH . 
D 4 HOH A 53 255 255 HOH HOH . 
D 4 HOH A 54 256 256 HOH HOH . 
D 4 HOH A 55 257 257 HOH HOH . 
D 4 HOH A 56 258 258 HOH HOH . 
D 4 HOH A 57 259 259 HOH HOH . 
D 4 HOH A 58 260 260 HOH HOH . 
D 4 HOH A 59 261 261 HOH HOH . 
D 4 HOH A 60 262 262 HOH HOH . 
D 4 HOH A 61 263 263 HOH HOH . 
D 4 HOH A 62 264 264 HOH HOH . 
D 4 HOH A 63 265 265 HOH HOH . 
D 4 HOH A 64 266 266 HOH HOH . 
D 4 HOH A 65 267 267 HOH HOH . 
D 4 HOH A 66 268 268 HOH HOH . 
D 4 HOH A 67 269 269 HOH HOH . 
D 4 HOH A 68 270 270 HOH HOH . 
D 4 HOH A 69 271 271 HOH HOH . 
D 4 HOH A 70 272 272 HOH HOH . 
D 4 HOH A 71 273 273 HOH HOH . 
D 4 HOH A 72 274 274 HOH HOH . 
D 4 HOH A 73 275 275 HOH HOH . 
D 4 HOH A 74 276 276 HOH HOH . 
D 4 HOH A 75 277 277 HOH HOH . 
D 4 HOH A 76 278 278 HOH HOH . 
D 4 HOH A 77 279 279 HOH HOH . 
D 4 HOH A 78 280 280 HOH HOH . 
D 4 HOH A 79 281 281 HOH HOH . 
D 4 HOH A 80 282 282 HOH HOH . 
D 4 HOH A 81 283 283 HOH HOH . 
D 4 HOH A 82 284 284 HOH HOH . 
D 4 HOH A 83 285 285 HOH HOH . 
D 4 HOH A 84 286 286 HOH HOH . 
D 4 HOH A 85 287 287 HOH HOH . 
D 4 HOH A 86 288 288 HOH HOH . 
D 4 HOH A 87 289 289 HOH HOH . 
D 4 HOH A 88 290 290 HOH HOH . 
D 4 HOH A 89 291 291 HOH HOH . 
D 4 HOH A 90 292 292 HOH HOH . 
D 4 HOH A 91 293 293 HOH HOH . 
D 4 HOH A 92 294 294 HOH HOH . 
D 4 HOH A 93 295 295 HOH HOH . 
D 4 HOH A 94 296 296 HOH HOH . 
D 4 HOH A 95 297 297 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CS MTA . . . B 2 0.019 74.289 57.089 1 37.89 ? CS MTA 204 A 1 
HETATM 2 S S5' MTA . . . B 2 0.057 75.162 58.683 1 38.86 ? S5' MTA 204 A 1 
HETATM 3 C C5' MTA . . . B 2 1.837 75.492 58.856 1 34.43 ? C5' MTA 204 A 1 
HETATM 4 C C4' MTA . . . B 2 2.535 74.457 59.741 1 32.5 ? C4' MTA 204 A 1 
HETATM 5 O O4' MTA . . . B 2 2.393 73.159 59.099 1 31.04 ? O4' MTA 204 A 1 
HETATM 6 C C2' MTA . . . B 2 4.694 73.578 59.107 1 30.42 ? C2' MTA 204 A 1 
HETATM 7 O O2' MTA . . . B 2 6.019 73.267 59.549 1 33.33 ? O2' MTA 204 A 1 
HETATM 8 C C3' MTA . . . B 2 4.028 74.803 59.827 1 30.96 ? C3' MTA 204 A 1 
HETATM 9 O O3' MTA . . . B 2 4.427 74.822 61.203 1 32.15 ? O3' MTA 204 A 1 
HETATM 10 C C1' MTA . . . B 2 3.65 72.467 59.322 1 27.9 ? C1' MTA 204 A 1 
HETATM 11 N N9 MTA . . . B 2 3.769 71.38 58.328 1 25.22 ? N9 MTA 204 A 1 
HETATM 12 C C8 MTA . . . B 2 3.656 71.482 56.962 1 23.93 ? C8 MTA 204 A 1 
HETATM 13 N N7 MTA . . . B 2 3.813 70.327 56.391 1 24.17 ? N7 MTA 204 A 1 
HETATM 14 C C5 MTA . . . B 2 4.037 69.393 57.352 1 24.19 ? C5 MTA 204 A 1 
HETATM 15 C C6 MTA . . . B 2 4.276 67.978 57.357 1 23.24 ? C6 MTA 204 A 1 
HETATM 16 N N6 MTA . . . B 2 4.313 67.277 56.165 1 23.54 ? N6 MTA 204 A 1 
HETATM 17 N N1 MTA . . . B 2 4.465 67.339 58.558 1 22.51 ? N1 MTA 204 A 1 
HETATM 18 C C2 MTA . . . B 2 4.433 68.01 59.747 1 23.3 ? C2 MTA 204 A 1 
HETATM 19 N N3 MTA . . . B 2 4.207 69.357 59.753 1 22.98 ? N3 MTA 204 A 1 
HETATM 20 C C4 MTA . . . B 2 4.01 70.07 58.619 1 23.94 ? C4 MTA 204 A 1 
#
_model_server_stats.io_time_ms              64 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           317 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           20 
#