data_3P2O
#
_model_server_result.job_id            BeWMVxP-LtCx4_hOtWo0Yg 
_model_server_result.datetime_utc      '2024-12-22 01:23:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p2o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":292}' 
#
_entry.id    3P2O 
#
_exptl.entry_id    3P2O 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.84 
_cell.angle_gamma         90 
_cell.entry_id            3P2O 
_cell.length_a            134.927 
_cell.length_b            44.981 
_cell.length_c            117.021 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P2O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale2 A C MSE 4 A MSE 1 1_555 A N THR 5 A THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale3 A C VAL 147 A VAL 144 1_555 A N MSE 148 A MSE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 A C MSE 148 A MSE 145 1_555 A N LYS 149 A LYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale5 A C PRO 175 A PRO 172 1_555 A N MSE 176 A MSE 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale6 A C MSE 176 A MSE 173 1_555 A N ALA 177 A ALA 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale7 A C THR 178 A THR 175 1_555 A N MSE 179 A MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale8 A C MSE 179 A MSE 176 1_555 A N LEU 180 A LEU 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale9 A C ASP 220 A ASP 217 1_555 A N MSE 221 A MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale10 A C MSE 221 A MSE 218 1_555 A N VAL 222 A VAL 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale11 A C PRO 266 A PRO 263 1_555 A N MSE 267 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale12 A C MSE 267 A MSE 264 1_555 A N THR 268 A THR 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale13 A C ALA 270 A ALA 267 1_555 A N MSE 271 A MSE 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale14 A C MSE 271 A MSE 268 1_555 A N LEU 272 A LEU 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale15 B C ALA 3 B ALA 0 1_555 B N MSE 4 B MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale16 B C MSE 4 B MSE 1 1_555 B N THR 5 B THR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? 
covale ? covale17 B C VAL 147 B VAL 144 1_555 B N MSE 148 B MSE 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale18 B C MSE 148 B MSE 145 1_555 B N LYS 149 B LYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale19 B C PRO 175 B PRO 172 1_555 B N MSE 176 B MSE 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale20 B C MSE 176 B MSE 173 1_555 B N ALA 177 B ALA 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale21 B C THR 178 B THR 175 1_555 B N MSE 179 B MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale22 B C MSE 179 B MSE 176 1_555 B N LEU 180 B LEU 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? 
covale ? covale23 B C ASP 220 B ASP 217 1_555 B N MSE 221 B MSE 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale24 B C MSE 221 B MSE 218 1_555 B N VAL 222 B VAL 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale25 B C PRO 266 B PRO 263 1_555 B N MSE 267 B MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale26 B C MSE 267 B MSE 264 1_555 B N THR 268 B THR 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale27 B C ALA 270 B ALA 267 1_555 B N MSE 271 B MSE 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale28 B C MSE 271 B MSE 268 1_555 B N LEU 272 B LEU 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3P2O 
_atom_sites.fract_transf_matrix[1][1]    0.007411 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004251 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022232 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009852 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NAD A 1 291 291 NAD NAD . 
D 3 GOL A 1 292 292 GOL GOL . 
E 2 NAD B 1 291 291 NAD NAD . 
F 4 HOH A 1 283 283 HOH HOH . 
F 4 HOH A 2 284 284 HOH HOH . 
F 4 HOH A 3 285 285 HOH HOH . 
F 4 HOH A 4 286 286 HOH HOH . 
F 4 HOH A 5 287 287 HOH HOH . 
F 4 HOH A 6 288 288 HOH HOH . 
F 4 HOH A 7 289 289 HOH HOH . 
F 4 HOH A 8 290 290 HOH HOH . 
F 4 HOH A 9 293 293 HOH HOH . 
F 4 HOH A 10 294 294 HOH HOH . 
F 4 HOH A 11 295 295 HOH HOH . 
F 4 HOH A 12 296 296 HOH HOH . 
F 4 HOH A 13 297 297 HOH HOH . 
F 4 HOH A 14 298 298 HOH HOH . 
F 4 HOH A 15 299 299 HOH HOH . 
F 4 HOH A 16 300 300 HOH HOH . 
F 4 HOH A 17 301 301 HOH HOH . 
F 4 HOH A 18 302 302 HOH HOH . 
F 4 HOH A 19 303 303 HOH HOH . 
F 4 HOH A 20 304 304 HOH HOH . 
F 4 HOH A 21 305 305 HOH HOH . 
F 4 HOH A 22 306 306 HOH HOH . 
F 4 HOH A 23 307 307 HOH HOH . 
F 4 HOH A 24 308 308 HOH HOH . 
F 4 HOH A 25 309 309 HOH HOH . 
F 4 HOH A 26 310 310 HOH HOH . 
F 4 HOH A 27 311 311 HOH HOH . 
F 4 HOH A 28 312 312 HOH HOH . 
F 4 HOH A 29 313 313 HOH HOH . 
F 4 HOH A 30 314 314 HOH HOH . 
F 4 HOH A 31 315 315 HOH HOH . 
F 4 HOH A 32 316 316 HOH HOH . 
F 4 HOH A 33 317 317 HOH HOH . 
F 4 HOH A 34 318 318 HOH HOH . 
F 4 HOH A 35 319 319 HOH HOH . 
F 4 HOH A 36 320 320 HOH HOH . 
F 4 HOH A 37 321 321 HOH HOH . 
F 4 HOH A 38 322 322 HOH HOH . 
F 4 HOH A 39 323 323 HOH HOH . 
F 4 HOH A 40 324 324 HOH HOH . 
F 4 HOH A 41 325 325 HOH HOH . 
F 4 HOH A 42 326 326 HOH HOH . 
F 4 HOH A 43 327 327 HOH HOH . 
F 4 HOH A 44 328 328 HOH HOH . 
F 4 HOH A 45 329 329 HOH HOH . 
F 4 HOH A 46 330 330 HOH HOH . 
F 4 HOH A 47 331 331 HOH HOH . 
F 4 HOH A 48 332 332 HOH HOH . 
F 4 HOH A 49 333 333 HOH HOH . 
F 4 HOH A 50 334 334 HOH HOH . 
F 4 HOH A 51 335 335 HOH HOH . 
F 4 HOH A 52 336 336 HOH HOH . 
F 4 HOH A 53 337 337 HOH HOH . 
F 4 HOH A 54 338 338 HOH HOH . 
F 4 HOH A 55 339 339 HOH HOH . 
F 4 HOH A 56 340 340 HOH HOH . 
F 4 HOH A 57 341 341 HOH HOH . 
F 4 HOH A 58 342 342 HOH HOH . 
F 4 HOH A 59 343 343 HOH HOH . 
F 4 HOH A 60 344 344 HOH HOH . 
F 4 HOH A 61 345 345 HOH HOH . 
F 4 HOH A 62 346 346 HOH HOH . 
F 4 HOH A 63 347 347 HOH HOH . 
F 4 HOH A 64 348 348 HOH HOH . 
F 4 HOH A 65 349 349 HOH HOH . 
F 4 HOH A 66 350 350 HOH HOH . 
F 4 HOH A 67 351 351 HOH HOH . 
F 4 HOH A 68 352 352 HOH HOH . 
G 4 HOH B 1 283 283 HOH HOH . 
G 4 HOH B 2 284 284 HOH HOH . 
G 4 HOH B 3 285 285 HOH HOH . 
G 4 HOH B 4 286 286 HOH HOH . 
G 4 HOH B 5 287 287 HOH HOH . 
G 4 HOH B 6 288 288 HOH HOH . 
G 4 HOH B 7 289 289 HOH HOH . 
G 4 HOH B 8 290 290 HOH HOH . 
G 4 HOH B 9 292 292 HOH HOH . 
G 4 HOH B 10 293 293 HOH HOH . 
G 4 HOH B 11 294 294 HOH HOH . 
G 4 HOH B 12 295 295 HOH HOH . 
G 4 HOH B 13 296 296 HOH HOH . 
G 4 HOH B 14 297 297 HOH HOH . 
G 4 HOH B 15 298 298 HOH HOH . 
G 4 HOH B 16 299 299 HOH HOH . 
G 4 HOH B 17 300 300 HOH HOH . 
G 4 HOH B 18 301 301 HOH HOH . 
G 4 HOH B 19 302 302 HOH HOH . 
G 4 HOH B 20 303 303 HOH HOH . 
G 4 HOH B 21 304 304 HOH HOH . 
G 4 HOH B 22 305 305 HOH HOH . 
G 4 HOH B 23 306 306 HOH HOH . 
G 4 HOH B 24 307 307 HOH HOH . 
G 4 HOH B 25 308 308 HOH HOH . 
G 4 HOH B 26 309 309 HOH HOH . 
G 4 HOH B 27 310 310 HOH HOH . 
G 4 HOH B 28 311 311 HOH HOH . 
G 4 HOH B 29 312 312 HOH HOH . 
G 4 HOH B 30 313 313 HOH HOH . 
G 4 HOH B 31 314 314 HOH HOH . 
G 4 HOH B 32 315 315 HOH HOH . 
G 4 HOH B 33 316 316 HOH HOH . 
G 4 HOH B 34 317 317 HOH HOH . 
G 4 HOH B 35 318 318 HOH HOH . 
G 4 HOH B 36 319 319 HOH HOH . 
G 4 HOH B 37 320 320 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 40.008 -22.785 -22.047 1 73.55 ? C1 GOL 292 A 1 
HETATM 2 O O1 GOL . . . D 3 40.412 -23.587 -23.151 1 73.69 ? O1 GOL 292 A 1 
HETATM 3 C C2 GOL . . . D 3 38.941 -23.521 -21.24 1 71.94 ? C2 GOL 292 A 1 
HETATM 4 O O2 GOL . . . D 3 39.313 -23.72 -19.877 1 65.12 ? O2 GOL 292 A 1 
HETATM 5 C C3 GOL . . . D 3 38.627 -24.833 -21.982 1 69.76 ? C3 GOL 292 A 1 
HETATM 6 O O3 GOL . . . D 3 37.249 -24.806 -22.41 1 63.2 ? O3 GOL 292 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#