data_3P2W # _model_server_result.job_id 9Ex00tfQS4D29RBM2eA1Mg _model_server_result.datetime_utc '2024-11-29 17:00:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p2w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":597}' # _entry.id 3P2W # _exptl.entry_id 3P2W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.48 _cell.angle_gamma 90 _cell.entry_id 3P2W _cell.length_a 33.462 _cell.length_b 98.882 _cell.length_c 36.138 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P2W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3P2W _atom_sites.fract_transf_matrix[1][1] 0.029885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004456 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010113 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027978 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 595 2 SO4 SO4 . C 2 SO4 A 1 596 3 SO4 SO4 . D 3 GOL A 1 597 1 GOL GOL . E 3 GOL A 1 598 2 GOL GOL . F 3 GOL A 1 599 3 GOL GOL . G 4 HOH A 1 9 9 HOH HOH . G 4 HOH A 2 10 10 HOH HOH . G 4 HOH A 3 11 11 HOH HOH . G 4 HOH A 4 12 12 HOH HOH . G 4 HOH A 5 13 13 HOH HOH . G 4 HOH A 6 14 14 HOH HOH . G 4 HOH A 7 15 15 HOH HOH . G 4 HOH A 8 16 16 HOH HOH . G 4 HOH A 9 17 17 HOH HOH . G 4 HOH A 10 19 19 HOH HOH . G 4 HOH A 11 20 20 HOH HOH . G 4 HOH A 12 21 21 HOH HOH . G 4 HOH A 13 22 22 HOH HOH . G 4 HOH A 14 23 23 HOH HOH . G 4 HOH A 15 24 24 HOH HOH . G 4 HOH A 16 25 25 HOH HOH . G 4 HOH A 17 26 26 HOH HOH . G 4 HOH A 18 27 27 HOH HOH . G 4 HOH A 19 28 28 HOH HOH . G 4 HOH A 20 29 29 HOH HOH . G 4 HOH A 21 30 30 HOH HOH . G 4 HOH A 22 31 31 HOH HOH . G 4 HOH A 23 32 32 HOH HOH . G 4 HOH A 24 33 33 HOH HOH . G 4 HOH A 25 35 35 HOH HOH . G 4 HOH A 26 36 36 HOH HOH . G 4 HOH A 27 37 37 HOH HOH . G 4 HOH A 28 38 38 HOH HOH . G 4 HOH A 29 39 39 HOH HOH . G 4 HOH A 30 40 40 HOH HOH . G 4 HOH A 31 41 41 HOH HOH . G 4 HOH A 32 42 42 HOH HOH . G 4 HOH A 33 43 43 HOH HOH . G 4 HOH A 34 44 44 HOH HOH . G 4 HOH A 35 45 45 HOH HOH . G 4 HOH A 36 46 46 HOH HOH . G 4 HOH A 37 47 47 HOH HOH . G 4 HOH A 38 48 48 HOH HOH . G 4 HOH A 39 49 49 HOH HOH . G 4 HOH A 40 50 50 HOH HOH . G 4 HOH A 41 51 51 HOH HOH . G 4 HOH A 42 52 52 HOH HOH . G 4 HOH A 43 53 53 HOH HOH . G 4 HOH A 44 54 54 HOH HOH . G 4 HOH A 45 55 55 HOH HOH . G 4 HOH A 46 56 56 HOH HOH . G 4 HOH A 47 57 57 HOH HOH . G 4 HOH A 48 58 58 HOH HOH . G 4 HOH A 49 59 59 HOH HOH . G 4 HOH A 50 60 60 HOH HOH . G 4 HOH A 51 61 61 HOH HOH . G 4 HOH A 52 62 62 HOH HOH . G 4 HOH A 53 63 63 HOH HOH . G 4 HOH A 54 64 64 HOH HOH . G 4 HOH A 55 66 66 HOH HOH . G 4 HOH A 56 67 67 HOH HOH . G 4 HOH A 57 68 68 HOH HOH . G 4 HOH A 58 69 69 HOH HOH . G 4 HOH A 59 71 71 HOH HOH . G 4 HOH A 60 72 72 HOH HOH . G 4 HOH A 61 73 73 HOH HOH . G 4 HOH A 62 74 74 HOH HOH . G 4 HOH A 63 75 75 HOH HOH . G 4 HOH A 64 76 76 HOH HOH . G 4 HOH A 65 77 77 HOH HOH . G 4 HOH A 66 78 78 HOH HOH . G 4 HOH A 67 79 79 HOH HOH . G 4 HOH A 68 80 80 HOH HOH . G 4 HOH A 69 81 81 HOH HOH . G 4 HOH A 70 82 82 HOH HOH . G 4 HOH A 71 83 83 HOH HOH . G 4 HOH A 72 84 84 HOH HOH . G 4 HOH A 73 85 85 HOH HOH . G 4 HOH A 74 86 86 HOH HOH . G 4 HOH A 75 87 87 HOH HOH . G 4 HOH A 76 88 88 HOH HOH . G 4 HOH A 77 89 89 HOH HOH . G 4 HOH A 78 90 90 HOH HOH . G 4 HOH A 79 91 91 HOH HOH . G 4 HOH A 80 92 92 HOH HOH . G 4 HOH A 81 93 93 HOH HOH . G 4 HOH A 82 94 94 HOH HOH . G 4 HOH A 83 96 96 HOH HOH . G 4 HOH A 84 97 97 HOH HOH . G 4 HOH A 85 98 98 HOH HOH . G 4 HOH A 86 99 99 HOH HOH . G 4 HOH A 87 100 100 HOH HOH . G 4 HOH A 88 101 101 HOH HOH . G 4 HOH A 89 102 102 HOH HOH . G 4 HOH A 90 103 103 HOH HOH . G 4 HOH A 91 104 104 HOH HOH . G 4 HOH A 92 105 105 HOH HOH . G 4 HOH A 93 106 106 HOH HOH . G 4 HOH A 94 107 107 HOH HOH . G 4 HOH A 95 108 108 HOH HOH . G 4 HOH A 96 109 109 HOH HOH . G 4 HOH A 97 110 110 HOH HOH . G 4 HOH A 98 111 111 HOH HOH . G 4 HOH A 99 112 112 HOH HOH . G 4 HOH A 100 113 113 HOH HOH . G 4 HOH A 101 114 114 HOH HOH . G 4 HOH A 102 115 115 HOH HOH . G 4 HOH A 103 116 116 HOH HOH . G 4 HOH A 104 117 117 HOH HOH . G 4 HOH A 105 118 118 HOH HOH . G 4 HOH A 106 120 120 HOH HOH . G 4 HOH A 107 121 121 HOH HOH . G 4 HOH A 108 122 122 HOH HOH . G 4 HOH A 109 123 123 HOH HOH . G 4 HOH A 110 125 125 HOH HOH . G 4 HOH A 111 126 126 HOH HOH . G 4 HOH A 112 127 127 HOH HOH . G 4 HOH A 113 128 128 HOH HOH . G 4 HOH A 114 129 129 HOH HOH . G 4 HOH A 115 130 130 HOH HOH . G 4 HOH A 116 131 131 HOH HOH . G 4 HOH A 117 132 132 HOH HOH . G 4 HOH A 118 133 133 HOH HOH . G 4 HOH A 119 134 134 HOH HOH . G 4 HOH A 120 135 135 HOH HOH . G 4 HOH A 121 136 136 HOH HOH . G 4 HOH A 122 137 137 HOH HOH . G 4 HOH A 123 138 138 HOH HOH . G 4 HOH A 124 139 139 HOH HOH . G 4 HOH A 125 140 140 HOH HOH . G 4 HOH A 126 141 141 HOH HOH . G 4 HOH A 127 142 142 HOH HOH . G 4 HOH A 128 143 143 HOH HOH . G 4 HOH A 129 145 145 HOH HOH . G 4 HOH A 130 146 146 HOH HOH . G 4 HOH A 131 147 147 HOH HOH . G 4 HOH A 132 149 149 HOH HOH . G 4 HOH A 133 150 150 HOH HOH . G 4 HOH A 134 151 151 HOH HOH . G 4 HOH A 135 152 152 HOH HOH . G 4 HOH A 136 153 153 HOH HOH . G 4 HOH A 137 154 154 HOH HOH . G 4 HOH A 138 155 155 HOH HOH . G 4 HOH A 139 157 157 HOH HOH . G 4 HOH A 140 158 158 HOH HOH . G 4 HOH A 141 159 159 HOH HOH . G 4 HOH A 142 160 160 HOH HOH . G 4 HOH A 143 161 161 HOH HOH . G 4 HOH A 144 162 162 HOH HOH . G 4 HOH A 145 163 163 HOH HOH . G 4 HOH A 146 164 164 HOH HOH . G 4 HOH A 147 165 165 HOH HOH . G 4 HOH A 148 166 166 HOH HOH . G 4 HOH A 149 167 167 HOH HOH . G 4 HOH A 150 168 168 HOH HOH . G 4 HOH A 151 172 172 HOH HOH . G 4 HOH A 152 173 173 HOH HOH . G 4 HOH A 153 175 175 HOH HOH . G 4 HOH A 154 177 177 HOH HOH . G 4 HOH A 155 178 178 HOH HOH . G 4 HOH A 156 179 179 HOH HOH . G 4 HOH A 157 183 183 HOH HOH . G 4 HOH A 158 184 184 HOH HOH . G 4 HOH A 159 185 185 HOH HOH . G 4 HOH A 160 186 186 HOH HOH . G 4 HOH A 161 187 187 HOH HOH . G 4 HOH A 162 188 188 HOH HOH . G 4 HOH A 163 190 190 HOH HOH . G 4 HOH A 164 191 191 HOH HOH . G 4 HOH A 165 194 194 HOH HOH . G 4 HOH A 166 195 195 HOH HOH . G 4 HOH A 167 196 196 HOH HOH . G 4 HOH A 168 197 197 HOH HOH . G 4 HOH A 169 198 198 HOH HOH . G 4 HOH A 170 200 200 HOH HOH . G 4 HOH A 171 201 201 HOH HOH . G 4 HOH A 172 202 202 HOH HOH . G 4 HOH A 173 203 203 HOH HOH . G 4 HOH A 174 205 205 HOH HOH . G 4 HOH A 175 207 207 HOH HOH . G 4 HOH A 176 208 208 HOH HOH . G 4 HOH A 177 209 209 HOH HOH . G 4 HOH A 178 213 213 HOH HOH . G 4 HOH A 179 214 214 HOH HOH . G 4 HOH A 180 215 215 HOH HOH . G 4 HOH A 181 216 216 HOH HOH . G 4 HOH A 182 217 217 HOH HOH . G 4 HOH A 183 218 218 HOH HOH . G 4 HOH A 184 219 219 HOH HOH . G 4 HOH A 185 220 220 HOH HOH . G 4 HOH A 186 221 221 HOH HOH . G 4 HOH A 187 223 223 HOH HOH . G 4 HOH A 188 224 224 HOH HOH . G 4 HOH A 189 225 225 HOH HOH . G 4 HOH A 190 226 226 HOH HOH . G 4 HOH A 191 229 229 HOH HOH . G 4 HOH A 192 231 231 HOH HOH . G 4 HOH A 193 232 232 HOH HOH . G 4 HOH A 194 233 233 HOH HOH . G 4 HOH A 195 600 4 HOH HOH . G 4 HOH A 196 601 5 HOH HOH . G 4 HOH A 197 602 6 HOH HOH . G 4 HOH A 198 603 7 HOH HOH . G 4 HOH A 199 604 2 HOH HOH . G 4 HOH A 200 605 3 HOH HOH . G 4 HOH A 201 606 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 22.15 4.114 22.079 1 50.25 ? C1 GOL 597 A 1 HETATM 2 O O1 GOL . . . D 3 22.342 3.127 21.092 1 50.01 ? O1 GOL 597 A 1 HETATM 3 C C2 GOL . . . D 3 20.817 3.89 22.782 1 50.29 ? C2 GOL 597 A 1 HETATM 4 O O2 GOL . . . D 3 20.427 5.092 23.403 1 50.28 ? O2 GOL 597 A 1 HETATM 5 C C3 GOL . . . D 3 20.972 2.806 23.844 1 50.29 ? C3 GOL 597 A 1 HETATM 6 O O3 GOL . . . D 3 20.717 1.543 23.27 1 50.41 ? O3 GOL 597 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 18 _model_server_stats.element_count 6 #