data_3P3N
#
_model_server_result.job_id            bIndlYyeWkIfbsydH5qQXA 
_model_server_result.datetime_utc      '2024-11-24 14:24:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p3n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1351}' 
#
_entry.id    3P3N 
#
_exptl.entry_id    3P3N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              146.098 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-OXOGLUTARIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P3N 
_cell.length_a            86.188 
_cell.length_b            86.188 
_cell.length_c            147.943 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P3N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 86.188 86.188 73.9715 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 C FE FE2 . A FE2 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 C FE FE2 . A FE2 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc3 A NE2 HIS 279 A HIS 279 1_555 C FE FE2 . A FE2 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc4 C FE FE2 . A FE2 350 1_555 K O HOH . A HOH 1071 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? 
metalc ? metalc5 C FE FE2 . A FE2 350 1_555 F O2 AKG . A AKG 1351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? 
metalc ? metalc6 C FE FE2 . A FE2 350 1_555 F O5 AKG . A AKG 1351 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
#
_chem_comp.formula           'C5 H6 O5' 
_chem_comp.formula_weight    146.098 
_chem_comp.id                AKG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2-OXOGLUTARIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 AKG doub 1 n n 
C1 O2 AKG sing 2 n n 
C1 C2 AKG sing 3 n n 
O2 HO2 AKG sing 4 n n 
C2 O5 AKG doub 5 n n 
C2 C3 AKG sing 6 n n 
C3 C4 AKG sing 7 n n 
C3 H31 AKG sing 8 n n 
C3 H32 AKG sing 9 n n 
C4 C5 AKG sing 10 n n 
C4 H41 AKG sing 11 n n 
C4 H42 AKG sing 12 n n 
C5 O3 AKG doub 13 n n 
C5 O4 AKG sing 14 n n 
O4 HO4 AKG sing 15 n n 
#
_atom_sites.entry_id                     3P3N 
_atom_sites.fract_transf_matrix[1][1]    0.011603 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011603 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006759 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 FE2 A 1 350 350 FE2 FE2 . 
D 4 SO4 A 1 401 401 SO4 SO4 . 
E 4 SO4 A 1 402 402 SO4 SO4 . 
F 5 AKG A 1 1351 1351 AKG AKG . 
G 6 GOL A 1 2000 2000 GOL GOL . 
H 6 GOL A 1 2001 2001 GOL GOL . 
I 6 GOL A 1 2002 2002 GOL GOL . 
J 6 GOL A 1 2003 2003 GOL GOL . 
K 7 HOH A 1 1001 1001 HOH HOH . 
K 7 HOH A 2 1002 1002 HOH HOH . 
K 7 HOH A 3 1003 1003 HOH HOH . 
K 7 HOH A 4 1004 1004 HOH HOH . 
K 7 HOH A 5 1005 1005 HOH HOH . 
K 7 HOH A 6 1006 1006 HOH HOH . 
K 7 HOH A 7 1007 1007 HOH HOH . 
K 7 HOH A 8 1008 1008 HOH HOH . 
K 7 HOH A 9 1009 1009 HOH HOH . 
K 7 HOH A 10 1010 1010 HOH HOH . 
K 7 HOH A 11 1011 1011 HOH HOH . 
K 7 HOH A 12 1012 1012 HOH HOH . 
K 7 HOH A 13 1013 1013 HOH HOH . 
K 7 HOH A 14 1014 1014 HOH HOH . 
K 7 HOH A 15 1016 1016 HOH HOH . 
K 7 HOH A 16 1017 1017 HOH HOH . 
K 7 HOH A 17 1018 1018 HOH HOH . 
K 7 HOH A 18 1019 1019 HOH HOH . 
K 7 HOH A 19 1020 1020 HOH HOH . 
K 7 HOH A 20 1021 1021 HOH HOH . 
K 7 HOH A 21 1023 1023 HOH HOH . 
K 7 HOH A 22 1025 1025 HOH HOH . 
K 7 HOH A 23 1026 1026 HOH HOH . 
K 7 HOH A 24 1027 1027 HOH HOH . 
K 7 HOH A 25 1028 1028 HOH HOH . 
K 7 HOH A 26 1029 1029 HOH HOH . 
K 7 HOH A 27 1030 1030 HOH HOH . 
K 7 HOH A 28 1031 1031 HOH HOH . 
K 7 HOH A 29 1032 1032 HOH HOH . 
K 7 HOH A 30 1033 1033 HOH HOH . 
K 7 HOH A 31 1034 1034 HOH HOH . 
K 7 HOH A 32 1035 1035 HOH HOH . 
K 7 HOH A 33 1036 1036 HOH HOH . 
K 7 HOH A 34 1037 1037 HOH HOH . 
K 7 HOH A 35 1038 1038 HOH HOH . 
K 7 HOH A 36 1039 1039 HOH HOH . 
K 7 HOH A 37 1040 1040 HOH HOH . 
K 7 HOH A 38 1041 1041 HOH HOH . 
K 7 HOH A 39 1042 1042 HOH HOH . 
K 7 HOH A 40 1043 1043 HOH HOH . 
K 7 HOH A 41 1044 1044 HOH HOH . 
K 7 HOH A 42 1045 1045 HOH HOH . 
K 7 HOH A 43 1046 1046 HOH HOH . 
K 7 HOH A 44 1047 1047 HOH HOH . 
K 7 HOH A 45 1048 1048 HOH HOH . 
K 7 HOH A 46 1049 1049 HOH HOH . 
K 7 HOH A 47 1050 1050 HOH HOH . 
K 7 HOH A 48 1051 1051 HOH HOH . 
K 7 HOH A 49 1052 1052 HOH HOH . 
K 7 HOH A 50 1053 1053 HOH HOH . 
K 7 HOH A 51 1054 1054 HOH HOH . 
K 7 HOH A 52 1055 1055 HOH HOH . 
K 7 HOH A 53 1056 1056 HOH HOH . 
K 7 HOH A 54 1057 1057 HOH HOH . 
K 7 HOH A 55 1058 1058 HOH HOH . 
K 7 HOH A 56 1059 1059 HOH HOH . 
K 7 HOH A 57 1060 1060 HOH HOH . 
K 7 HOH A 58 1061 1061 HOH HOH . 
K 7 HOH A 59 1062 1062 HOH HOH . 
K 7 HOH A 60 1063 1063 HOH HOH . 
K 7 HOH A 61 1064 1064 HOH HOH . 
K 7 HOH A 62 1065 1065 HOH HOH . 
K 7 HOH A 63 1066 1066 HOH HOH . 
K 7 HOH A 64 1067 1067 HOH HOH . 
K 7 HOH A 65 1068 1068 HOH HOH . 
K 7 HOH A 66 1069 1069 HOH HOH . 
K 7 HOH A 67 1070 1070 HOH HOH . 
K 7 HOH A 68 1071 1071 HOH HOH . 
K 7 HOH A 69 1072 1072 HOH HOH . 
K 7 HOH A 70 1073 1073 HOH HOH . 
K 7 HOH A 71 1074 1074 HOH HOH . 
K 7 HOH A 72 1075 1075 HOH HOH . 
K 7 HOH A 73 1076 1076 HOH HOH . 
K 7 HOH A 74 1077 1077 HOH HOH . 
K 7 HOH A 75 1078 1078 HOH HOH . 
K 7 HOH A 76 1079 1079 HOH HOH . 
K 7 HOH A 77 1080 1080 HOH HOH . 
K 7 HOH A 78 1081 1081 HOH HOH . 
K 7 HOH A 79 1082 1082 HOH HOH . 
K 7 HOH A 80 1083 1083 HOH HOH . 
K 7 HOH A 81 1084 1084 HOH HOH . 
K 7 HOH A 82 1085 1085 HOH HOH . 
K 7 HOH A 83 1086 1086 HOH HOH . 
K 7 HOH A 84 1087 1087 HOH HOH . 
K 7 HOH A 85 1088 1088 HOH HOH . 
K 7 HOH A 86 1089 1089 HOH HOH . 
K 7 HOH A 87 1090 1090 HOH HOH . 
K 7 HOH A 88 1091 1091 HOH HOH . 
K 7 HOH A 89 1092 1092 HOH HOH . 
K 7 HOH A 90 1093 1093 HOH HOH . 
K 7 HOH A 91 1094 1094 HOH HOH . 
K 7 HOH A 92 1095 1095 HOH HOH . 
K 7 HOH A 93 1096 1096 HOH HOH . 
K 7 HOH A 94 1097 1097 HOH HOH . 
K 7 HOH A 95 1098 1098 HOH HOH . 
K 7 HOH A 96 1099 1099 HOH HOH . 
K 7 HOH A 97 1100 1100 HOH HOH . 
K 7 HOH A 98 1101 1101 HOH HOH . 
K 7 HOH A 99 1102 1102 HOH HOH . 
K 7 HOH A 100 1104 1104 HOH HOH . 
K 7 HOH A 101 1105 1105 HOH HOH . 
K 7 HOH A 102 1106 1106 HOH HOH . 
K 7 HOH A 103 1107 1107 HOH HOH . 
K 7 HOH A 104 1108 1108 HOH HOH . 
K 7 HOH A 105 1109 1109 HOH HOH . 
K 7 HOH A 106 1110 1110 HOH HOH . 
K 7 HOH A 107 1111 1111 HOH HOH . 
K 7 HOH A 108 1112 1112 HOH HOH . 
K 7 HOH A 109 1113 1113 HOH HOH . 
K 7 HOH A 110 1114 1114 HOH HOH . 
K 7 HOH A 111 1115 1115 HOH HOH . 
K 7 HOH A 112 1116 1116 HOH HOH . 
K 7 HOH A 113 1117 1117 HOH HOH . 
K 7 HOH A 114 1118 1118 HOH HOH . 
K 7 HOH A 115 1119 1119 HOH HOH . 
K 7 HOH A 116 1120 1120 HOH HOH . 
K 7 HOH A 117 1121 1121 HOH HOH . 
K 7 HOH A 118 1122 1122 HOH HOH . 
K 7 HOH A 119 1123 1123 HOH HOH . 
K 7 HOH A 120 1124 1124 HOH HOH . 
K 7 HOH A 121 1125 1125 HOH HOH . 
K 7 HOH A 122 1126 1126 HOH HOH . 
K 7 HOH A 123 1127 1127 HOH HOH . 
K 7 HOH A 124 1128 1128 HOH HOH . 
K 7 HOH A 125 1129 1129 HOH HOH . 
K 7 HOH A 126 1130 1130 HOH HOH . 
K 7 HOH A 127 1131 1131 HOH HOH . 
K 7 HOH A 128 1132 1132 HOH HOH . 
K 7 HOH A 129 1133 1133 HOH HOH . 
K 7 HOH A 130 1134 1134 HOH HOH . 
K 7 HOH A 131 1135 1135 HOH HOH . 
K 7 HOH A 132 1136 1136 HOH HOH . 
K 7 HOH A 133 1137 1137 HOH HOH . 
K 7 HOH A 134 1138 1138 HOH HOH . 
K 7 HOH A 135 1139 1139 HOH HOH . 
K 7 HOH A 136 1140 1140 HOH HOH . 
K 7 HOH A 137 1141 1141 HOH HOH . 
K 7 HOH A 138 1143 1143 HOH HOH . 
K 7 HOH A 139 1144 1144 HOH HOH . 
K 7 HOH A 140 1145 1145 HOH HOH . 
K 7 HOH A 141 1146 1146 HOH HOH . 
K 7 HOH A 142 1147 1147 HOH HOH . 
K 7 HOH A 143 1148 1148 HOH HOH . 
K 7 HOH A 144 1149 1149 HOH HOH . 
K 7 HOH A 145 1150 1150 HOH HOH . 
K 7 HOH A 146 1151 1151 HOH HOH . 
K 7 HOH A 147 1152 1152 HOH HOH . 
K 7 HOH A 148 1153 1153 HOH HOH . 
K 7 HOH A 149 1154 1154 HOH HOH . 
K 7 HOH A 150 1155 1155 HOH HOH . 
K 7 HOH A 151 1156 1156 HOH HOH . 
K 7 HOH A 152 1159 1159 HOH HOH . 
K 7 HOH A 153 1160 1160 HOH HOH . 
K 7 HOH A 154 1162 1162 HOH HOH . 
K 7 HOH A 155 1163 1163 HOH HOH . 
K 7 HOH A 156 1164 1164 HOH HOH . 
K 7 HOH A 157 1165 1165 HOH HOH . 
L 7 HOH B 1 1015 1015 HOH HOH . 
L 7 HOH B 2 1022 1022 HOH HOH . 
L 7 HOH B 3 1024 1024 HOH HOH . 
L 7 HOH B 4 1103 1103 HOH HOH . 
L 7 HOH B 5 1142 1142 HOH HOH . 
L 7 HOH B 6 1157 1157 HOH HOH . 
L 7 HOH B 7 1158 1158 HOH HOH . 
L 7 HOH B 8 1161 1161 HOH HOH . 
L 7 HOH B 9 1166 1166 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 AKG . . . F 5 22.366 25.272 27.876 1 51.41 ? C1 AKG 1351 A 1 
HETATM 2 O O1 AKG . . . F 5 22.269 24.19 27.299 1 56.03 ? O1 AKG 1351 A 1 
HETATM 3 O O2 AKG . . . F 5 23.44 25.872 27.879 1 50.45 ? O2 AKG 1351 A 1 
HETATM 4 C C2 AKG . . . F 5 21.158 25.873 28.596 1 51.67 ? C2 AKG 1351 A 1 
HETATM 5 O O5 AKG . . . F 5 21.332 26.858 29.314 1 50.61 ? O5 AKG 1351 A 1 
HETATM 6 C C3 AKG . . . F 5 19.892 25.314 28.428 1 49.55 ? C3 AKG 1351 A 1 
HETATM 7 C C4 AKG . . . F 5 18.819 25.745 29.202 1 50.41 ? C4 AKG 1351 A 1 
HETATM 8 C C5 AKG . . . F 5 17.462 25.286 28.66 1 51.53 ? C5 AKG 1351 A 1 
HETATM 9 O O3 AKG . . . F 5 16.429 25.567 29.269 1 50.91 ? O3 AKG 1351 A 1 
HETATM 10 O O4 AKG . . . F 5 17.369 24.636 27.618 1 51.89 ? O4 AKG 1351 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           297 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#