data_3P3S # _model_server_result.job_id B1Eh7sBlV6XAiSSHmyvbzg _model_server_result.datetime_utc '2025-02-05 10:37:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p3s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":129}' # _entry.id 3P3S # _exptl.entry_id 3P3S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 375.016 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5Z)-2-amino-5-(3,5-dibromo-4-hydroxybenzylidene)-1-methyl-1,5-dihydro-4H-imidazol-4-one _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P3S _cell.length_a 44.11 _cell.length_b 84.195 _cell.length_c 64.888 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P3S _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C11 H9 Br2 N3 O2' _chem_comp.formula_weight 375.016 _chem_comp.id 3M2 _chem_comp.mon_nstd_flag . _chem_comp.name (5Z)-2-amino-5-(3,5-dibromo-4-hydroxybenzylidene)-1-methyl-1,5-dihydro-4H-imidazol-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA NAR 3M2 sing 1 n n CAA HAA 3M2 sing 2 n n CAA HAAA 3M2 sing 3 n n CAA HAAB 3M2 sing 4 n n NAB CAO 3M2 sing 5 n n NAB HNAB 3M2 sing 6 n n NAB HNAA 3M2 sing 7 n n CAP OAC 3M2 doub 8 n n OAD CAK 3M2 sing 9 n n OAD HOAD 3M2 sing 10 n n BRAE CAM 3M2 sing 11 z n CAN BRAF 3M2 sing 12 n n CAL CAG 3M2 sing 13 n n CAG CAQ 3M2 doub 14 n n CAG HAG 3M2 sing 15 n n CAM CAH 3M2 doub 16 n y CAH CAL 3M2 sing 17 n y CAH HAH 3M2 sing 18 n n CAN CAI 3M2 sing 19 n y CAI CAL 3M2 doub 20 n y CAI HAI 3M2 sing 21 n n CAO NAJ 3M2 doub 22 n n CAP NAJ 3M2 sing 23 n n CAK CAM 3M2 sing 24 n y CAK CAN 3M2 doub 25 n y NAR CAO 3M2 sing 26 n n CAQ CAP 3M2 sing 27 n n NAR CAQ 3M2 sing 28 n n # _atom_sites.entry_id 3P3S _atom_sites.fract_transf_matrix[1][1] 0.022671 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011877 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3M2 A 1 128 128 3M2 3M2 . D 2 3M2 A 1 129 129 3M2 3M2 . E 2 3M2 B 1 128 128 3M2 3M2 . F 2 3M2 B 1 129 129 3M2 3M2 . G 3 HOH A 1 130 130 HOH HOH . G 3 HOH A 2 131 131 HOH HOH . G 3 HOH A 3 132 132 HOH HOH . G 3 HOH A 4 133 133 HOH HOH . G 3 HOH A 5 134 134 HOH HOH . G 3 HOH A 6 135 135 HOH HOH . G 3 HOH A 7 136 136 HOH HOH . G 3 HOH A 8 137 137 HOH HOH . G 3 HOH A 9 138 138 HOH HOH . G 3 HOH A 10 139 139 HOH HOH . G 3 HOH A 11 140 140 HOH HOH . G 3 HOH A 12 141 141 HOH HOH . G 3 HOH A 13 142 142 HOH HOH . G 3 HOH A 14 143 143 HOH HOH . G 3 HOH A 15 144 144 HOH HOH . G 3 HOH A 16 145 145 HOH HOH . G 3 HOH A 17 146 146 HOH HOH . G 3 HOH A 18 147 147 HOH HOH . G 3 HOH A 19 148 148 HOH HOH . G 3 HOH A 20 149 149 HOH HOH . G 3 HOH A 21 150 150 HOH HOH . G 3 HOH A 22 151 151 HOH HOH . G 3 HOH A 23 152 152 HOH HOH . G 3 HOH A 24 153 153 HOH HOH . G 3 HOH A 25 154 154 HOH HOH . G 3 HOH A 26 155 155 HOH HOH . G 3 HOH A 27 156 156 HOH HOH . G 3 HOH A 28 157 157 HOH HOH . G 3 HOH A 29 158 158 HOH HOH . G 3 HOH A 30 159 159 HOH HOH . G 3 HOH A 31 160 160 HOH HOH . G 3 HOH A 32 161 161 HOH HOH . G 3 HOH A 33 162 162 HOH HOH . G 3 HOH A 34 163 163 HOH HOH . G 3 HOH A 35 164 164 HOH HOH . G 3 HOH A 36 165 165 HOH HOH . G 3 HOH A 37 166 166 HOH HOH . G 3 HOH A 38 167 167 HOH HOH . G 3 HOH A 39 168 168 HOH HOH . G 3 HOH A 40 169 169 HOH HOH . G 3 HOH A 41 170 170 HOH HOH . G 3 HOH A 42 171 171 HOH HOH . G 3 HOH A 43 172 172 HOH HOH . G 3 HOH A 44 173 173 HOH HOH . G 3 HOH A 45 174 174 HOH HOH . G 3 HOH A 46 175 175 HOH HOH . G 3 HOH A 47 176 176 HOH HOH . G 3 HOH A 48 177 177 HOH HOH . G 3 HOH A 49 178 178 HOH HOH . G 3 HOH A 50 179 179 HOH HOH . H 3 HOH B 1 130 130 HOH HOH . H 3 HOH B 2 131 131 HOH HOH . H 3 HOH B 3 132 132 HOH HOH . H 3 HOH B 4 133 133 HOH HOH . H 3 HOH B 5 134 134 HOH HOH . H 3 HOH B 6 135 135 HOH HOH . H 3 HOH B 7 136 136 HOH HOH . H 3 HOH B 8 137 137 HOH HOH . H 3 HOH B 9 138 138 HOH HOH . H 3 HOH B 10 139 139 HOH HOH . H 3 HOH B 11 140 140 HOH HOH . H 3 HOH B 12 141 141 HOH HOH . H 3 HOH B 13 142 142 HOH HOH . H 3 HOH B 14 143 143 HOH HOH . H 3 HOH B 15 144 144 HOH HOH . H 3 HOH B 16 145 145 HOH HOH . H 3 HOH B 17 146 146 HOH HOH . H 3 HOH B 18 147 147 HOH HOH . H 3 HOH B 19 148 148 HOH HOH . H 3 HOH B 20 149 149 HOH HOH . H 3 HOH B 21 150 150 HOH HOH . H 3 HOH B 22 151 151 HOH HOH . H 3 HOH B 23 152 152 HOH HOH . H 3 HOH B 24 153 153 HOH HOH . H 3 HOH B 25 154 154 HOH HOH . H 3 HOH B 26 155 155 HOH HOH . H 3 HOH B 27 156 156 HOH HOH . H 3 HOH B 28 157 157 HOH HOH . H 3 HOH B 29 158 158 HOH HOH . H 3 HOH B 30 159 159 HOH HOH . H 3 HOH B 31 160 160 HOH HOH . H 3 HOH B 32 161 161 HOH HOH . H 3 HOH B 33 162 162 HOH HOH . H 3 HOH B 34 163 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 3M2 . . . F 2 -20.91 -16.013 -33.204 1 22.61 ? CAA 3M2 129 B 1 HETATM 2 N NAB 3M2 . . . F 2 -23.124 -15.438 -31.292 1 35.29 ? NAB 3M2 129 B 1 HETATM 3 O OAC 3M2 . . . F 2 -20.237 -18.324 -29.169 1 34.96 ? OAC 3M2 129 B 1 HETATM 4 O OAD 3M2 . . . F 2 -16.228 -18.196 -36.653 1 26.92 ? OAD 3M2 129 B 1 HETATM 5 BR BRAE 3M2 . . . F 2 -19.134 -18.438 -37.044 1 31.35 ? BRAE 3M2 129 B 1 HETATM 6 BR BRAF 3M2 . . . F 2 -14.315 -18.03 -34.232 1 29.7 ? BRAF 3M2 129 B 1 HETATM 7 C CAG 3M2 . . . F 2 -18.992 -17.921 -31.721 1 27 ? CAG 3M2 129 B 1 HETATM 8 C CAH 3M2 . . . F 2 -18.955 -18.099 -34.189 1 24.11 ? CAH 3M2 129 B 1 HETATM 9 C CAI 3M2 . . . F 2 -16.902 -17.916 -33.018 1 25.89 ? CAI 3M2 129 B 1 HETATM 10 N NAJ 3M2 . . . F 2 -21.888 -16.885 -29.859 1 33.63 ? NAJ 3M2 129 B 1 HETATM 11 C CAK 3M2 . . . F 2 -16.858 -18.144 -35.439 1 25.72 ? CAK 3M2 129 B 1 HETATM 12 C CAL 3M2 . . . F 2 -18.311 -17.97 -32.973 1 25.3 ? CAL 3M2 129 B 1 HETATM 13 C CAM 3M2 . . . F 2 -18.246 -18.194 -35.395 1 26.42 ? CAM 3M2 129 B 1 HETATM 14 C CAN 3M2 . . . F 2 -16.188 -18.005 -34.232 1 22.79 ? CAN 3M2 129 B 1 HETATM 15 C CAO 3M2 . . . F 2 -22.079 -16.234 -31.015 1 29.24 ? CAO 3M2 129 B 1 HETATM 16 C CAP 3M2 . . . F 2 -20.73 -17.571 -30.021 1 28.65 ? CAP 3M2 129 B 1 HETATM 17 C CAQ 3M2 . . . F 2 -20.205 -17.358 -31.289 1 27.35 ? CAQ 3M2 129 B 1 HETATM 18 N NAR 3M2 . . . F 2 -21.088 -16.53 -31.868 1 28.33 ? NAR 3M2 129 B 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 361 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 18 #