data_3P3U # _model_server_result.job_id izNXenbLV7bAlcUN7WipUw _model_server_result.datetime_utc '2025-07-04 17:11:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":128}' # _entry.id 3P3U # _exptl.entry_id 3P3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 267.283 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[5-(2-ethoxyphenyl)-1,2,4-oxadiazol-3-yl]pyridine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P3U _cell.length_a 42.496 _cell.length_b 84.787 _cell.length_c 63.521 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C15 H13 N3 O2' _chem_comp.formula_weight 267.283 _chem_comp.id 3M4 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[5-(2-ethoxyphenyl)-1,2,4-oxadiazol-3-yl]pyridine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAJ CAA 3M4 sing 1 n n CAA HAA 3M4 sing 2 n n CAA HAAA 3M4 sing 3 n n CAA HAAB 3M4 sing 4 n n CAC CAB 3M4 doub 5 n y CAF CAB 3M4 sing 6 n y CAB HAB 3M4 sing 7 n n CAG CAC 3M4 sing 8 n y CAC HAC 3M4 sing 9 n n NAK CAD 3M4 doub 10 n y CAD CAH 3M4 sing 11 n y CAD HAD 3M4 sing 12 n n NAK CAE 3M4 sing 13 n y CAE CAI 3M4 doub 14 n y CAE HAE 3M4 sing 15 n n CAQ CAF 3M4 doub 16 n y CAF HAF 3M4 sing 17 n n CAS CAG 3M4 doub 18 n y CAG HAG 3M4 sing 19 n n CAH CAP 3M4 doub 20 n y CAH HAH 3M4 sing 21 n n CAI CAP 3M4 sing 22 n y CAI HAI 3M4 sing 23 n n CAJ OAN 3M4 sing 24 n n CAJ HAJ 3M4 sing 25 n n CAJ HAJA 3M4 sing 26 n n CAR NAL 3M4 doub 27 n y NAL OAO 3M4 sing 28 n y CAR NAM 3M4 sing 29 n y NAM CAT 3M4 doub 30 n y OAN CAQ 3M4 sing 31 n n OAO CAT 3M4 sing 32 n y CAP CAR 3M4 sing 33 n y CAS CAQ 3M4 sing 34 n y CAT CAS 3M4 sing 35 n y # _atom_sites.entry_id 3P3U _atom_sites.fract_transf_matrix[1][1] 0.023532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011794 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 3M4 A 1 128 128 3M4 3M4 . D 2 3M4 B 1 128 128 3M4 3M4 . E 3 HOH A 1 129 129 HOH HOH . E 3 HOH A 2 130 130 HOH HOH . E 3 HOH A 3 131 131 HOH HOH . E 3 HOH A 4 132 132 HOH HOH . E 3 HOH A 5 133 133 HOH HOH . E 3 HOH A 6 134 134 HOH HOH . E 3 HOH A 7 135 135 HOH HOH . E 3 HOH A 8 136 136 HOH HOH . E 3 HOH A 9 137 137 HOH HOH . E 3 HOH A 10 138 138 HOH HOH . E 3 HOH A 11 139 139 HOH HOH . E 3 HOH A 12 140 140 HOH HOH . E 3 HOH A 13 141 141 HOH HOH . E 3 HOH A 14 142 142 HOH HOH . E 3 HOH A 15 143 143 HOH HOH . E 3 HOH A 16 144 144 HOH HOH . E 3 HOH A 17 145 145 HOH HOH . E 3 HOH A 18 146 146 HOH HOH . E 3 HOH A 19 147 147 HOH HOH . E 3 HOH A 20 148 148 HOH HOH . E 3 HOH A 21 149 149 HOH HOH . E 3 HOH A 22 150 150 HOH HOH . E 3 HOH A 23 151 151 HOH HOH . E 3 HOH A 24 152 152 HOH HOH . E 3 HOH A 25 153 153 HOH HOH . E 3 HOH A 26 154 154 HOH HOH . E 3 HOH A 27 155 155 HOH HOH . E 3 HOH A 28 156 156 HOH HOH . E 3 HOH A 29 157 157 HOH HOH . E 3 HOH A 30 158 158 HOH HOH . E 3 HOH A 31 159 159 HOH HOH . E 3 HOH A 32 160 160 HOH HOH . E 3 HOH A 33 161 161 HOH HOH . E 3 HOH A 34 162 162 HOH HOH . E 3 HOH A 35 163 163 HOH HOH . E 3 HOH A 36 164 164 HOH HOH . E 3 HOH A 37 165 165 HOH HOH . E 3 HOH A 38 166 166 HOH HOH . E 3 HOH A 39 167 167 HOH HOH . E 3 HOH A 40 168 168 HOH HOH . E 3 HOH A 41 169 169 HOH HOH . E 3 HOH A 42 170 170 HOH HOH . E 3 HOH A 43 171 171 HOH HOH . E 3 HOH A 44 172 172 HOH HOH . E 3 HOH A 45 173 173 HOH HOH . E 3 HOH A 46 174 174 HOH HOH . E 3 HOH A 47 175 175 HOH HOH . E 3 HOH A 48 176 176 HOH HOH . E 3 HOH A 49 177 177 HOH HOH . E 3 HOH A 50 178 178 HOH HOH . E 3 HOH A 51 179 179 HOH HOH . E 3 HOH A 52 180 180 HOH HOH . E 3 HOH A 53 181 181 HOH HOH . E 3 HOH A 54 182 182 HOH HOH . E 3 HOH A 55 183 183 HOH HOH . E 3 HOH A 56 184 184 HOH HOH . E 3 HOH A 57 185 185 HOH HOH . E 3 HOH A 58 186 186 HOH HOH . E 3 HOH A 59 187 187 HOH HOH . E 3 HOH A 60 188 188 HOH HOH . E 3 HOH A 61 189 189 HOH HOH . E 3 HOH A 62 190 190 HOH HOH . E 3 HOH A 63 191 191 HOH HOH . E 3 HOH A 64 192 192 HOH HOH . E 3 HOH A 65 193 193 HOH HOH . E 3 HOH A 66 194 194 HOH HOH . E 3 HOH A 67 195 195 HOH HOH . E 3 HOH A 68 196 196 HOH HOH . E 3 HOH A 69 197 197 HOH HOH . E 3 HOH A 70 198 198 HOH HOH . E 3 HOH A 71 199 199 HOH HOH . F 3 HOH B 1 129 129 HOH HOH . F 3 HOH B 2 130 130 HOH HOH . F 3 HOH B 3 131 131 HOH HOH . F 3 HOH B 4 132 132 HOH HOH . F 3 HOH B 5 133 133 HOH HOH . F 3 HOH B 6 134 134 HOH HOH . F 3 HOH B 7 135 135 HOH HOH . F 3 HOH B 8 136 136 HOH HOH . F 3 HOH B 9 137 137 HOH HOH . F 3 HOH B 10 138 138 HOH HOH . F 3 HOH B 11 139 139 HOH HOH . F 3 HOH B 12 140 140 HOH HOH . F 3 HOH B 13 141 141 HOH HOH . F 3 HOH B 14 142 142 HOH HOH . F 3 HOH B 15 143 143 HOH HOH . F 3 HOH B 16 144 144 HOH HOH . F 3 HOH B 17 145 145 HOH HOH . F 3 HOH B 18 146 146 HOH HOH . F 3 HOH B 19 147 147 HOH HOH . F 3 HOH B 20 148 148 HOH HOH . F 3 HOH B 21 149 149 HOH HOH . F 3 HOH B 22 150 150 HOH HOH . F 3 HOH B 23 151 151 HOH HOH . F 3 HOH B 24 152 152 HOH HOH . F 3 HOH B 25 153 153 HOH HOH . F 3 HOH B 26 154 154 HOH HOH . F 3 HOH B 27 155 155 HOH HOH . F 3 HOH B 28 156 156 HOH HOH . F 3 HOH B 29 157 157 HOH HOH . F 3 HOH B 30 158 158 HOH HOH . F 3 HOH B 31 159 159 HOH HOH . F 3 HOH B 32 160 160 HOH HOH . F 3 HOH B 33 161 161 HOH HOH . F 3 HOH B 34 162 162 HOH HOH . F 3 HOH B 35 163 163 HOH HOH . F 3 HOH B 36 164 164 HOH HOH . F 3 HOH B 37 165 165 HOH HOH . F 3 HOH B 38 166 166 HOH HOH . F 3 HOH B 39 167 167 HOH HOH . F 3 HOH B 40 168 168 HOH HOH . F 3 HOH B 41 169 169 HOH HOH . F 3 HOH B 42 170 170 HOH HOH . F 3 HOH B 43 171 171 HOH HOH . F 3 HOH B 44 172 172 HOH HOH . F 3 HOH B 45 173 173 HOH HOH . F 3 HOH B 46 174 174 HOH HOH . F 3 HOH B 47 175 175 HOH HOH . F 3 HOH B 48 176 176 HOH HOH . F 3 HOH B 49 177 177 HOH HOH . F 3 HOH B 50 178 178 HOH HOH . F 3 HOH B 51 179 179 HOH HOH . F 3 HOH B 52 180 180 HOH HOH . F 3 HOH B 53 181 181 HOH HOH . F 3 HOH B 54 182 182 HOH HOH . F 3 HOH B 55 183 183 HOH HOH . F 3 HOH B 56 184 184 HOH HOH . F 3 HOH B 57 185 185 HOH HOH . F 3 HOH B 58 186 186 HOH HOH . F 3 HOH B 59 187 187 HOH HOH . F 3 HOH B 60 188 188 HOH HOH . F 3 HOH B 61 189 189 HOH HOH . F 3 HOH B 62 190 190 HOH HOH . F 3 HOH B 63 191 191 HOH HOH . F 3 HOH B 64 192 192 HOH HOH . F 3 HOH B 65 193 193 HOH HOH . F 3 HOH B 66 194 194 HOH HOH . F 3 HOH B 67 195 195 HOH HOH . F 3 HOH B 68 196 196 HOH HOH . F 3 HOH B 69 197 197 HOH HOH . F 3 HOH B 70 198 198 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA 3M4 . A . C 2 3.167 -2.387 -3.01 0.25 27.07 ? CAA 3M4 128 A 1 HETATM 2 C CAA 3M4 . B . C 2 -3.167 2.387 -3.01 0.25 27.07 ? CAA 3M4 128 A 1 HETATM 3 C CAB 3M4 . A . C 2 -1.065 1.022 -1.122 0.25 28.64 ? CAB 3M4 128 A 1 HETATM 4 C CAB 3M4 . B . C 2 1.065 -1.022 -1.122 0.25 28.64 ? CAB 3M4 128 A 1 HETATM 5 C CAC 3M4 . A . C 2 -1.756 1.61 -2.177 0.25 28.85 ? CAC 3M4 128 A 1 HETATM 6 C CAC 3M4 . B . C 2 1.756 -1.61 -2.177 0.25 28.85 ? CAC 3M4 128 A 1 HETATM 7 C CAD 3M4 . A . C 2 -0.18 2.957 -9.742 0.25 26.56 ? CAD 3M4 128 A 1 HETATM 8 C CAD 3M4 . B . C 2 0.18 -2.957 -9.742 0.25 26.56 ? CAD 3M4 128 A 1 HETATM 9 C CAE 3M4 . A . C 2 -1.261 1.074 -10.209 0.25 33.52 ? CAE 3M4 128 A 1 HETATM 10 C CAE 3M4 . B . C 2 1.261 -1.074 -10.209 0.25 33.52 ? CAE 3M4 128 A 1 HETATM 11 C CAF 3M4 . A . C 2 -0.053 0.11 -1.357 0.25 29.28 ? CAF 3M4 128 A 1 HETATM 12 C CAF 3M4 . B . C 2 0.053 -0.11 -1.357 0.25 29.28 ? CAF 3M4 128 A 1 HETATM 13 C CAG 3M4 . A . C 2 -1.361 1.239 -3.459 0.25 25.65 ? CAG 3M4 128 A 1 HETATM 14 C CAG 3M4 . B . C 2 1.361 -1.239 -3.459 0.25 25.65 ? CAG 3M4 128 A 1 HETATM 15 C CAH 3M4 . A . C 2 0.151 2.318 -8.546 0.25 27.26 ? CAH 3M4 128 A 1 HETATM 16 C CAH 3M4 . B . C 2 -0.151 -2.318 -8.546 0.25 27.26 ? CAH 3M4 128 A 1 HETATM 17 C CAI 3M4 . A . C 2 -0.947 0.308 -9.084 0.25 30.83 ? CAI 3M4 128 A 1 HETATM 18 C CAI 3M4 . B . C 2 0.947 -0.308 -9.084 0.25 30.83 ? CAI 3M4 128 A 1 HETATM 19 C CAJ 3M4 . A . C 2 2.095 -1.574 -3.81 0.25 30.24 ? CAJ 3M4 128 A 1 HETATM 20 C CAJ 3M4 . B . C 2 -2.095 1.574 -3.81 0.25 30.24 ? CAJ 3M4 128 A 1 HETATM 21 N NAK 3M4 . A . C 2 -0.865 2.302 -10.579 0.25 29.19 ? NAK 3M4 128 A 1 HETATM 22 N NAK 3M4 . B . C 2 0.865 -2.302 -10.579 0.25 29.19 ? NAK 3M4 128 A 1 HETATM 23 N NAL 3M4 . A . C 2 0.429 -0.901 -6.85 0.25 26.41 ? NAL 3M4 128 A 1 HETATM 24 N NAL 3M4 . B . C 2 -0.429 0.901 -6.85 0.25 26.41 ? NAL 3M4 128 A 1 HETATM 25 N NAM 3M4 . A . C 2 -0.349 0.924 -5.937 0.25 25.36 ? NAM 3M4 128 A 1 HETATM 26 N NAM 3M4 . B . C 2 0.349 -0.924 -5.937 0.25 25.36 ? NAM 3M4 128 A 1 HETATM 27 O OAN 3M4 . A . C 2 1.338 -1.136 -2.713 0.25 30.62 ? OAN 3M4 128 A 1 HETATM 28 O OAN 3M4 . B . C 2 -1.338 1.136 -2.713 0.25 30.62 ? OAN 3M4 128 A 1 HETATM 29 O OAO 3M4 . A . C 2 0.394 -1.102 -5.494 0.25 27.73 ? OAO 3M4 128 A 1 HETATM 30 O OAO 3M4 . B . C 2 -0.394 1.102 -5.494 0.25 27.73 ? OAO 3M4 128 A 1 HETATM 31 C CAP 3M4 . A . C 2 -0.207 1.021 -8.215 0.25 28.55 ? CAP 3M4 128 A 1 HETATM 32 C CAP 3M4 . B . C 2 0.207 -1.021 -8.215 0.25 28.55 ? CAP 3M4 128 A 1 HETATM 33 C CAQ 3M4 . A . C 2 0.341 -0.236 -2.63 0.25 28.34 ? CAQ 3M4 128 A 1 HETATM 34 C CAQ 3M4 . B . C 2 -0.341 0.236 -2.63 0.25 28.34 ? CAQ 3M4 128 A 1 HETATM 35 C CAR 3M4 . A . C 2 0.021 0.356 -7.049 0.25 25.71 ? CAR 3M4 128 A 1 HETATM 36 C CAR 3M4 . B . C 2 -0.021 -0.356 -7.049 0.25 25.71 ? CAR 3M4 128 A 1 HETATM 37 C CAS 3M4 . A . C 2 -0.336 0.344 -3.675 0.25 25.95 ? CAS 3M4 128 A 1 HETATM 38 C CAS 3M4 . B . C 2 0.336 -0.344 -3.675 0.25 25.95 ? CAS 3M4 128 A 1 HETATM 39 C CAT 3M4 . A . C 2 -0.081 0.072 -4.986 0.25 26.6 ? CAT 3M4 128 A 1 HETATM 40 C CAT 3M4 . B . C 2 0.081 -0.072 -4.986 0.25 26.6 ? CAT 3M4 128 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 40 #