data_3P3X
#
_model_server_result.job_id            r5-XkEbjaLxwByRbKhxfAw 
_model_server_result.datetime_utc      '2024-11-27 17:26:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p3x 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":407}' 
#
_entry.id    3P3X 
#
_exptl.entry_id    3P3X 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P3X 
_cell.length_a            129.33 
_cell.length_b            131.78 
_cell.length_c            53.23 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P3X 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1 
B,G,H,I,J,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 365 A CYS 355 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc2 B SG CYS 365 B CYS 355 1_555 G FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc3 G FE HEM . B HEM 501 1_555 L O HOH . B HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3P3X 
_atom_sites.fract_transf_matrix[1][1]    0.007732 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007588 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018786 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 501 501 HEM HEM . 
D 3 GOL A 1 407 2 GOL GOL . 
E 4 SO4 A 1 408 4 SO4 SO4 . 
F 5 CL A 1 409 5 CL CL . 
G 2 HEM B 1 501 501 HEM HEM . 
H 3 GOL B 1 407 1 GOL GOL . 
I 3 GOL B 1 408 3 GOL GOL . 
J 5 CL B 1 409 6 CL CL . 
K 6 HOH A 1 410 1 HOH HOH . 
K 6 HOH A 2 411 2 HOH HOH . 
K 6 HOH A 3 412 3 HOH HOH . 
K 6 HOH A 4 413 4 HOH HOH . 
K 6 HOH A 5 414 5 HOH HOH . 
K 6 HOH A 6 415 6 HOH HOH . 
K 6 HOH A 7 416 7 HOH HOH . 
K 6 HOH A 8 417 8 HOH HOH . 
K 6 HOH A 9 418 11 HOH HOH . 
K 6 HOH A 10 419 12 HOH HOH . 
K 6 HOH A 11 420 13 HOH HOH . 
K 6 HOH A 12 421 14 HOH HOH . 
K 6 HOH A 13 422 15 HOH HOH . 
K 6 HOH A 14 423 16 HOH HOH . 
K 6 HOH A 15 424 17 HOH HOH . 
K 6 HOH A 16 425 18 HOH HOH . 
K 6 HOH A 17 426 19 HOH HOH . 
K 6 HOH A 18 427 20 HOH HOH . 
K 6 HOH A 19 428 21 HOH HOH . 
K 6 HOH A 20 429 22 HOH HOH . 
K 6 HOH A 21 430 23 HOH HOH . 
K 6 HOH A 22 431 25 HOH HOH . 
K 6 HOH A 23 432 26 HOH HOH . 
K 6 HOH A 24 433 27 HOH HOH . 
K 6 HOH A 25 434 28 HOH HOH . 
K 6 HOH A 26 435 29 HOH HOH . 
K 6 HOH A 27 436 30 HOH HOH . 
K 6 HOH A 28 437 31 HOH HOH . 
K 6 HOH A 29 438 32 HOH HOH . 
K 6 HOH A 30 439 33 HOH HOH . 
K 6 HOH A 31 440 35 HOH HOH . 
K 6 HOH A 32 441 37 HOH HOH . 
K 6 HOH A 33 442 38 HOH HOH . 
K 6 HOH A 34 443 39 HOH HOH . 
K 6 HOH A 35 444 45 HOH HOH . 
K 6 HOH A 36 445 46 HOH HOH . 
K 6 HOH A 37 446 47 HOH HOH . 
K 6 HOH A 38 447 56 HOH HOH . 
K 6 HOH A 39 448 80 HOH HOH . 
K 6 HOH A 40 449 82 HOH HOH . 
K 6 HOH A 41 450 83 HOH HOH . 
K 6 HOH A 42 451 84 HOH HOH . 
K 6 HOH A 43 452 85 HOH HOH . 
K 6 HOH A 44 453 86 HOH HOH . 
K 6 HOH A 45 454 91 HOH HOH . 
K 6 HOH A 46 455 95 HOH HOH . 
K 6 HOH A 47 456 96 HOH HOH . 
K 6 HOH A 48 457 97 HOH HOH . 
K 6 HOH A 49 458 101 HOH HOH . 
K 6 HOH A 50 459 104 HOH HOH . 
K 6 HOH A 51 460 105 HOH HOH . 
K 6 HOH A 52 461 110 HOH HOH . 
K 6 HOH A 53 462 114 HOH HOH . 
K 6 HOH A 54 463 117 HOH HOH . 
K 6 HOH A 55 464 118 HOH HOH . 
K 6 HOH A 56 465 119 HOH HOH . 
K 6 HOH A 57 466 122 HOH HOH . 
K 6 HOH A 58 467 127 HOH HOH . 
K 6 HOH A 59 468 128 HOH HOH . 
K 6 HOH A 60 469 131 HOH HOH . 
K 6 HOH A 61 470 133 HOH HOH . 
K 6 HOH A 62 471 134 HOH HOH . 
K 6 HOH A 63 472 136 HOH HOH . 
K 6 HOH A 64 473 137 HOH HOH . 
K 6 HOH A 65 474 138 HOH HOH . 
K 6 HOH A 66 475 141 HOH HOH . 
K 6 HOH A 67 476 142 HOH HOH . 
K 6 HOH A 68 477 143 HOH HOH . 
K 6 HOH A 69 478 144 HOH HOH . 
K 6 HOH A 70 479 145 HOH HOH . 
K 6 HOH A 71 480 146 HOH HOH . 
K 6 HOH A 72 481 150 HOH HOH . 
K 6 HOH A 73 482 152 HOH HOH . 
K 6 HOH A 74 483 158 HOH HOH . 
K 6 HOH A 75 484 159 HOH HOH . 
K 6 HOH A 76 485 160 HOH HOH . 
K 6 HOH A 77 486 165 HOH HOH . 
K 6 HOH A 78 487 166 HOH HOH . 
K 6 HOH A 79 488 172 HOH HOH . 
K 6 HOH A 80 489 173 HOH HOH . 
K 6 HOH A 81 490 175 HOH HOH . 
K 6 HOH A 82 491 176 HOH HOH . 
K 6 HOH A 83 492 177 HOH HOH . 
K 6 HOH A 84 493 179 HOH HOH . 
K 6 HOH A 85 494 182 HOH HOH . 
K 6 HOH A 86 495 187 HOH HOH . 
K 6 HOH A 87 496 188 HOH HOH . 
K 6 HOH A 88 497 189 HOH HOH . 
K 6 HOH A 89 498 192 HOH HOH . 
K 6 HOH A 90 499 193 HOH HOH . 
K 6 HOH A 91 500 196 HOH HOH . 
K 6 HOH A 92 502 198 HOH HOH . 
K 6 HOH A 93 503 203 HOH HOH . 
K 6 HOH A 94 504 205 HOH HOH . 
K 6 HOH A 95 505 213 HOH HOH . 
K 6 HOH A 96 506 215 HOH HOH . 
K 6 HOH A 97 507 216 HOH HOH . 
K 6 HOH A 98 508 219 HOH HOH . 
K 6 HOH A 99 509 220 HOH HOH . 
K 6 HOH A 100 510 221 HOH HOH . 
K 6 HOH A 101 511 223 HOH HOH . 
K 6 HOH A 102 512 225 HOH HOH . 
K 6 HOH A 103 513 226 HOH HOH . 
K 6 HOH A 104 514 227 HOH HOH . 
K 6 HOH A 105 515 228 HOH HOH . 
K 6 HOH A 106 516 233 HOH HOH . 
K 6 HOH A 107 517 234 HOH HOH . 
K 6 HOH A 108 518 235 HOH HOH . 
K 6 HOH A 109 519 236 HOH HOH . 
K 6 HOH A 110 520 237 HOH HOH . 
K 6 HOH A 111 521 243 HOH HOH . 
K 6 HOH A 112 522 246 HOH HOH . 
K 6 HOH A 113 523 251 HOH HOH . 
K 6 HOH A 114 524 252 HOH HOH . 
K 6 HOH A 115 525 253 HOH HOH . 
L 6 HOH B 1 410 34 HOH HOH . 
L 6 HOH B 2 411 40 HOH HOH . 
L 6 HOH B 3 412 41 HOH HOH . 
L 6 HOH B 4 413 42 HOH HOH . 
L 6 HOH B 5 414 44 HOH HOH . 
L 6 HOH B 6 415 48 HOH HOH . 
L 6 HOH B 7 416 49 HOH HOH . 
L 6 HOH B 8 417 50 HOH HOH . 
L 6 HOH B 9 418 51 HOH HOH . 
L 6 HOH B 10 419 52 HOH HOH . 
L 6 HOH B 11 420 53 HOH HOH . 
L 6 HOH B 12 421 54 HOH HOH . 
L 6 HOH B 13 422 55 HOH HOH . 
L 6 HOH B 14 423 57 HOH HOH . 
L 6 HOH B 15 424 58 HOH HOH . 
L 6 HOH B 16 425 59 HOH HOH . 
L 6 HOH B 17 426 60 HOH HOH . 
L 6 HOH B 18 427 61 HOH HOH . 
L 6 HOH B 19 428 62 HOH HOH . 
L 6 HOH B 20 429 63 HOH HOH . 
L 6 HOH B 21 430 64 HOH HOH . 
L 6 HOH B 22 431 65 HOH HOH . 
L 6 HOH B 23 432 66 HOH HOH . 
L 6 HOH B 24 433 67 HOH HOH . 
L 6 HOH B 25 434 68 HOH HOH . 
L 6 HOH B 26 435 69 HOH HOH . 
L 6 HOH B 27 436 70 HOH HOH . 
L 6 HOH B 28 437 71 HOH HOH . 
L 6 HOH B 29 438 72 HOH HOH . 
L 6 HOH B 30 439 73 HOH HOH . 
L 6 HOH B 31 440 74 HOH HOH . 
L 6 HOH B 32 441 75 HOH HOH . 
L 6 HOH B 33 442 76 HOH HOH . 
L 6 HOH B 34 443 77 HOH HOH . 
L 6 HOH B 35 444 78 HOH HOH . 
L 6 HOH B 36 445 79 HOH HOH . 
L 6 HOH B 37 446 87 HOH HOH . 
L 6 HOH B 38 447 92 HOH HOH . 
L 6 HOH B 39 448 99 HOH HOH . 
L 6 HOH B 40 449 100 HOH HOH . 
L 6 HOH B 41 450 106 HOH HOH . 
L 6 HOH B 42 451 107 HOH HOH . 
L 6 HOH B 43 452 108 HOH HOH . 
L 6 HOH B 44 453 112 HOH HOH . 
L 6 HOH B 45 454 113 HOH HOH . 
L 6 HOH B 46 455 115 HOH HOH . 
L 6 HOH B 47 456 116 HOH HOH . 
L 6 HOH B 48 457 121 HOH HOH . 
L 6 HOH B 49 458 123 HOH HOH . 
L 6 HOH B 50 459 124 HOH HOH . 
L 6 HOH B 51 460 129 HOH HOH . 
L 6 HOH B 52 461 135 HOH HOH . 
L 6 HOH B 53 462 139 HOH HOH . 
L 6 HOH B 54 463 149 HOH HOH . 
L 6 HOH B 55 464 151 HOH HOH . 
L 6 HOH B 56 465 153 HOH HOH . 
L 6 HOH B 57 466 155 HOH HOH . 
L 6 HOH B 58 467 156 HOH HOH . 
L 6 HOH B 59 468 157 HOH HOH . 
L 6 HOH B 60 469 161 HOH HOH . 
L 6 HOH B 61 470 162 HOH HOH . 
L 6 HOH B 62 471 163 HOH HOH . 
L 6 HOH B 63 472 167 HOH HOH . 
L 6 HOH B 64 473 168 HOH HOH . 
L 6 HOH B 65 474 170 HOH HOH . 
L 6 HOH B 66 475 171 HOH HOH . 
L 6 HOH B 67 476 178 HOH HOH . 
L 6 HOH B 68 477 180 HOH HOH . 
L 6 HOH B 69 478 183 HOH HOH . 
L 6 HOH B 70 479 184 HOH HOH . 
L 6 HOH B 71 480 185 HOH HOH . 
L 6 HOH B 72 481 190 HOH HOH . 
L 6 HOH B 73 482 191 HOH HOH . 
L 6 HOH B 74 483 194 HOH HOH . 
L 6 HOH B 75 484 197 HOH HOH . 
L 6 HOH B 76 485 200 HOH HOH . 
L 6 HOH B 77 486 201 HOH HOH . 
L 6 HOH B 78 487 204 HOH HOH . 
L 6 HOH B 79 488 208 HOH HOH . 
L 6 HOH B 80 489 209 HOH HOH . 
L 6 HOH B 81 490 210 HOH HOH . 
L 6 HOH B 82 491 211 HOH HOH . 
L 6 HOH B 83 492 229 HOH HOH . 
L 6 HOH B 84 493 230 HOH HOH . 
L 6 HOH B 85 494 231 HOH HOH . 
L 6 HOH B 86 495 238 HOH HOH . 
L 6 HOH B 87 496 239 HOH HOH . 
L 6 HOH B 88 497 240 HOH HOH . 
L 6 HOH B 89 498 241 HOH HOH . 
L 6 HOH B 90 499 242 HOH HOH . 
L 6 HOH B 91 500 244 HOH HOH . 
L 6 HOH B 92 502 245 HOH HOH . 
L 6 HOH B 93 503 250 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 27.211 32.668 0.257 1 76.85 ? C1 GOL 407 A 1 
HETATM 2 O O1 GOL . . . D 3 26.52 32.34 1.441 1 74.01 ? O1 GOL 407 A 1 
HETATM 3 C C2 GOL . . . D 3 28.315 31.65 -0.004 1 76.89 ? C2 GOL 407 A 1 
HETATM 4 O O2 GOL . . . D 3 29.031 31.389 1.18 1 75.64 ? O2 GOL 407 A 1 
HETATM 5 C C3 GOL . . . D 3 27.722 30.355 -0.543 1 75.09 ? C3 GOL 407 A 1 
HETATM 6 O O3 GOL . . . D 3 27.872 30.329 -1.945 1 77.21 ? O3 GOL 407 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#