data_3P3Z # _model_server_result.job_id FafV6Nbbji_dBZrTda_VyQ _model_server_result.datetime_utc '2025-02-27 02:51:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":408}' # _entry.id 3P3Z # _exptl.entry_id 3P3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3P3Z _cell.length_a 129.37 _cell.length_b 129.37 _cell.length_c 71.07 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 365 A CYS 355 1_555 B FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc2 B FE HEM . A HEM 501 1_555 C NAM P3Z . A P3Z 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.403 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3P3Z _atom_sites.fract_transf_matrix[1][1] 0.00773 _atom_sites.fract_transf_matrix[1][2] 0.004463 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008926 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014071 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 501 501 HEM HEM . C 3 P3Z A 1 502 502 P3Z P3Z . D 4 GOL A 1 407 1 GOL GOL . E 4 GOL A 1 408 2 GOL GOL . F 5 CL A 1 409 3 CL CL . G 5 CL A 1 410 4 CL CL . H 5 CL A 1 411 5 CL CL . I 6 HOH A 1 412 1 HOH HOH . I 6 HOH A 2 413 2 HOH HOH . I 6 HOH A 3 414 3 HOH HOH . I 6 HOH A 4 415 4 HOH HOH . I 6 HOH A 5 416 5 HOH HOH . I 6 HOH A 6 417 6 HOH HOH . I 6 HOH A 7 418 7 HOH HOH . I 6 HOH A 8 419 10 HOH HOH . I 6 HOH A 9 420 11 HOH HOH . I 6 HOH A 10 421 12 HOH HOH . I 6 HOH A 11 422 13 HOH HOH . I 6 HOH A 12 423 15 HOH HOH . I 6 HOH A 13 424 16 HOH HOH . I 6 HOH A 14 425 17 HOH HOH . I 6 HOH A 15 426 19 HOH HOH . I 6 HOH A 16 427 20 HOH HOH . I 6 HOH A 17 428 21 HOH HOH . I 6 HOH A 18 429 22 HOH HOH . I 6 HOH A 19 430 23 HOH HOH . I 6 HOH A 20 431 24 HOH HOH . I 6 HOH A 21 432 26 HOH HOH . I 6 HOH A 22 433 27 HOH HOH . I 6 HOH A 23 434 30 HOH HOH . I 6 HOH A 24 435 31 HOH HOH . I 6 HOH A 25 436 32 HOH HOH . I 6 HOH A 26 437 33 HOH HOH . I 6 HOH A 27 438 34 HOH HOH . I 6 HOH A 28 439 35 HOH HOH . I 6 HOH A 29 440 36 HOH HOH . I 6 HOH A 30 441 37 HOH HOH . I 6 HOH A 31 442 38 HOH HOH . I 6 HOH A 32 443 39 HOH HOH . I 6 HOH A 33 444 40 HOH HOH . I 6 HOH A 34 445 41 HOH HOH . I 6 HOH A 35 446 42 HOH HOH . I 6 HOH A 36 447 43 HOH HOH . I 6 HOH A 37 448 44 HOH HOH . I 6 HOH A 38 449 46 HOH HOH . I 6 HOH A 39 450 47 HOH HOH . I 6 HOH A 40 451 48 HOH HOH . I 6 HOH A 41 452 50 HOH HOH . I 6 HOH A 42 453 51 HOH HOH . I 6 HOH A 43 454 52 HOH HOH . I 6 HOH A 44 455 53 HOH HOH . I 6 HOH A 45 456 54 HOH HOH . I 6 HOH A 46 457 55 HOH HOH . I 6 HOH A 47 458 56 HOH HOH . I 6 HOH A 48 459 58 HOH HOH . I 6 HOH A 49 460 59 HOH HOH . I 6 HOH A 50 461 61 HOH HOH . I 6 HOH A 51 462 62 HOH HOH . I 6 HOH A 52 463 63 HOH HOH . I 6 HOH A 53 464 64 HOH HOH . I 6 HOH A 54 465 65 HOH HOH . I 6 HOH A 55 466 66 HOH HOH . I 6 HOH A 56 467 68 HOH HOH . I 6 HOH A 57 468 70 HOH HOH . I 6 HOH A 58 469 71 HOH HOH . I 6 HOH A 59 470 72 HOH HOH . I 6 HOH A 60 471 73 HOH HOH . I 6 HOH A 61 472 74 HOH HOH . I 6 HOH A 62 473 75 HOH HOH . I 6 HOH A 63 474 76 HOH HOH . I 6 HOH A 64 475 77 HOH HOH . I 6 HOH A 65 476 78 HOH HOH . I 6 HOH A 66 477 79 HOH HOH . I 6 HOH A 67 478 80 HOH HOH . I 6 HOH A 68 479 82 HOH HOH . I 6 HOH A 69 480 83 HOH HOH . I 6 HOH A 70 481 84 HOH HOH . I 6 HOH A 71 482 86 HOH HOH . I 6 HOH A 72 483 87 HOH HOH . I 6 HOH A 73 484 88 HOH HOH . I 6 HOH A 74 485 89 HOH HOH . I 6 HOH A 75 486 90 HOH HOH . I 6 HOH A 76 487 91 HOH HOH . I 6 HOH A 77 488 92 HOH HOH . I 6 HOH A 78 489 93 HOH HOH . I 6 HOH A 79 490 95 HOH HOH . I 6 HOH A 80 491 97 HOH HOH . I 6 HOH A 81 492 98 HOH HOH . I 6 HOH A 82 493 102 HOH HOH . I 6 HOH A 83 494 103 HOH HOH . I 6 HOH A 84 495 106 HOH HOH . I 6 HOH A 85 496 107 HOH HOH . I 6 HOH A 86 497 109 HOH HOH . I 6 HOH A 87 498 110 HOH HOH . I 6 HOH A 88 499 112 HOH HOH . I 6 HOH A 89 500 113 HOH HOH . I 6 HOH A 90 503 115 HOH HOH . I 6 HOH A 91 504 117 HOH HOH . I 6 HOH A 92 505 121 HOH HOH . I 6 HOH A 93 506 124 HOH HOH . I 6 HOH A 94 507 125 HOH HOH . I 6 HOH A 95 508 126 HOH HOH . I 6 HOH A 96 509 127 HOH HOH . I 6 HOH A 97 510 131 HOH HOH . I 6 HOH A 98 511 133 HOH HOH . I 6 HOH A 99 512 135 HOH HOH . I 6 HOH A 100 513 137 HOH HOH . I 6 HOH A 101 514 138 HOH HOH . I 6 HOH A 102 515 139 HOH HOH . I 6 HOH A 103 516 141 HOH HOH . I 6 HOH A 104 517 142 HOH HOH . I 6 HOH A 105 518 143 HOH HOH . I 6 HOH A 106 519 145 HOH HOH . I 6 HOH A 107 520 146 HOH HOH . I 6 HOH A 108 521 148 HOH HOH . I 6 HOH A 109 522 149 HOH HOH . I 6 HOH A 110 523 150 HOH HOH . I 6 HOH A 111 524 151 HOH HOH . I 6 HOH A 112 525 152 HOH HOH . I 6 HOH A 113 526 154 HOH HOH . I 6 HOH A 114 527 156 HOH HOH . I 6 HOH A 115 528 157 HOH HOH . I 6 HOH A 116 529 162 HOH HOH . I 6 HOH A 117 530 163 HOH HOH . I 6 HOH A 118 531 165 HOH HOH . I 6 HOH A 119 532 166 HOH HOH . I 6 HOH A 120 533 167 HOH HOH . I 6 HOH A 121 534 168 HOH HOH . I 6 HOH A 122 535 169 HOH HOH . I 6 HOH A 123 536 171 HOH HOH . I 6 HOH A 124 537 173 HOH HOH . I 6 HOH A 125 538 174 HOH HOH . I 6 HOH A 126 539 178 HOH HOH . I 6 HOH A 127 540 179 HOH HOH . I 6 HOH A 128 541 180 HOH HOH . I 6 HOH A 129 542 181 HOH HOH . I 6 HOH A 130 543 182 HOH HOH . I 6 HOH A 131 544 183 HOH HOH . I 6 HOH A 132 545 184 HOH HOH . I 6 HOH A 133 546 185 HOH HOH . I 6 HOH A 134 547 186 HOH HOH . I 6 HOH A 135 548 187 HOH HOH . I 6 HOH A 136 549 188 HOH HOH . I 6 HOH A 137 550 189 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 38.618 10.679 39.758 1 134.42 ? C1 GOL 408 A 1 HETATM 2 O O1 GOL . . . E 4 39.088 11.077 38.49 1 135.62 ? O1 GOL 408 A 1 HETATM 3 C C2 GOL . . . E 4 37.217 10.099 39.617 1 128.75 ? C2 GOL 408 A 1 HETATM 4 O O2 GOL . . . E 4 36.269 11.052 40.038 1 142.82 ? O2 GOL 408 A 1 HETATM 5 C C3 GOL . . . E 4 37.098 8.864 40.497 1 117.31 ? C3 GOL 408 A 1 HETATM 6 O O3 GOL . . . E 4 36.717 7.738 39.737 1 104.83 ? O3 GOL 408 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #