data_3P4I
#
_model_server_result.job_id            Wl9P1-Z7XeslODklQhndhQ 
_model_server_result.datetime_utc      '2024-11-23 11:41:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p4i 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":389}' 
#
_entry.id    3P4I 
#
_exptl.entry_id    3P4I 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P4I 
_cell.length_a            85.64 
_cell.length_b            101.71 
_cell.length_c            105.77 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P4I 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     3P4I 
_atom_sites.fract_transf_matrix[1][1]    0.011677 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009832 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009454 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 EDO A 1 389 389 EDO EDO . 
D 3 HOH A 1 390 6 HOH HOH . 
D 3 HOH A 2 391 7 HOH HOH . 
D 3 HOH A 3 392 8 HOH HOH . 
D 3 HOH A 4 393 11 HOH HOH . 
D 3 HOH A 5 394 15 HOH HOH . 
D 3 HOH A 6 395 16 HOH HOH . 
D 3 HOH A 7 396 17 HOH HOH . 
D 3 HOH A 8 397 18 HOH HOH . 
D 3 HOH A 9 398 19 HOH HOH . 
D 3 HOH A 10 399 21 HOH HOH . 
D 3 HOH A 11 400 22 HOH HOH . 
D 3 HOH A 12 401 25 HOH HOH . 
D 3 HOH A 13 402 26 HOH HOH . 
D 3 HOH A 14 403 27 HOH HOH . 
D 3 HOH A 15 404 30 HOH HOH . 
D 3 HOH A 16 405 31 HOH HOH . 
D 3 HOH A 17 406 33 HOH HOH . 
D 3 HOH A 18 407 34 HOH HOH . 
D 3 HOH A 19 408 36 HOH HOH . 
D 3 HOH A 20 409 43 HOH HOH . 
D 3 HOH A 21 410 46 HOH HOH . 
D 3 HOH A 22 411 48 HOH HOH . 
D 3 HOH A 23 412 53 HOH HOH . 
D 3 HOH A 24 413 55 HOH HOH . 
D 3 HOH A 25 414 57 HOH HOH . 
D 3 HOH A 26 415 61 HOH HOH . 
D 3 HOH A 27 416 63 HOH HOH . 
D 3 HOH A 28 417 65 HOH HOH . 
D 3 HOH A 29 418 66 HOH HOH . 
D 3 HOH A 30 419 67 HOH HOH . 
D 3 HOH A 31 420 69 HOH HOH . 
D 3 HOH A 32 421 70 HOH HOH . 
D 3 HOH A 33 422 74 HOH HOH . 
D 3 HOH A 34 423 75 HOH HOH . 
D 3 HOH A 35 424 77 HOH HOH . 
D 3 HOH A 36 425 83 HOH HOH . 
D 3 HOH A 37 426 85 HOH HOH . 
D 3 HOH A 38 427 87 HOH HOH . 
D 3 HOH A 39 428 88 HOH HOH . 
D 3 HOH A 40 429 92 HOH HOH . 
D 3 HOH A 41 430 93 HOH HOH . 
D 3 HOH A 42 431 95 HOH HOH . 
D 3 HOH A 43 432 97 HOH HOH . 
D 3 HOH A 44 433 99 HOH HOH . 
D 3 HOH A 45 434 104 HOH HOH . 
D 3 HOH A 46 435 105 HOH HOH . 
D 3 HOH A 47 436 108 HOH HOH . 
D 3 HOH A 48 437 109 HOH HOH . 
D 3 HOH A 49 438 114 HOH HOH . 
D 3 HOH A 50 439 117 HOH HOH . 
D 3 HOH A 51 440 120 HOH HOH . 
D 3 HOH A 52 441 123 HOH HOH . 
D 3 HOH A 53 442 127 HOH HOH . 
D 3 HOH A 54 443 128 HOH HOH . 
D 3 HOH A 55 444 129 HOH HOH . 
D 3 HOH A 56 445 131 HOH HOH . 
D 3 HOH A 57 446 132 HOH HOH . 
D 3 HOH A 58 447 133 HOH HOH . 
D 3 HOH A 59 448 134 HOH HOH . 
D 3 HOH A 60 449 135 HOH HOH . 
D 3 HOH A 61 450 136 HOH HOH . 
D 3 HOH A 62 451 140 HOH HOH . 
D 3 HOH A 63 452 141 HOH HOH . 
D 3 HOH A 64 453 142 HOH HOH . 
D 3 HOH A 65 454 143 HOH HOH . 
D 3 HOH A 66 455 144 HOH HOH . 
D 3 HOH A 67 456 145 HOH HOH . 
D 3 HOH A 68 457 146 HOH HOH . 
D 3 HOH A 69 458 150 HOH HOH . 
D 3 HOH A 70 459 151 HOH HOH . 
D 3 HOH A 71 460 152 HOH HOH . 
D 3 HOH A 72 461 153 HOH HOH . 
D 3 HOH A 73 462 154 HOH HOH . 
D 3 HOH A 74 463 155 HOH HOH . 
D 3 HOH A 75 464 156 HOH HOH . 
D 3 HOH A 76 465 157 HOH HOH . 
D 3 HOH A 77 466 158 HOH HOH . 
D 3 HOH A 78 467 159 HOH HOH . 
D 3 HOH A 79 468 160 HOH HOH . 
D 3 HOH A 80 469 161 HOH HOH . 
D 3 HOH A 81 470 163 HOH HOH . 
D 3 HOH A 82 471 164 HOH HOH . 
D 3 HOH A 83 472 165 HOH HOH . 
D 3 HOH A 84 473 190 HOH HOH . 
D 3 HOH A 85 474 191 HOH HOH . 
D 3 HOH A 86 475 192 HOH HOH . 
D 3 HOH A 87 476 193 HOH HOH . 
D 3 HOH A 88 477 194 HOH HOH . 
D 3 HOH A 89 478 195 HOH HOH . 
D 3 HOH A 90 479 205 HOH HOH . 
D 3 HOH A 91 480 210 HOH HOH . 
D 3 HOH A 92 481 215 HOH HOH . 
D 3 HOH A 93 482 216 HOH HOH . 
D 3 HOH A 94 483 217 HOH HOH . 
D 3 HOH A 95 484 218 HOH HOH . 
D 3 HOH A 96 485 219 HOH HOH . 
D 3 HOH A 97 486 220 HOH HOH . 
D 3 HOH A 98 487 221 HOH HOH . 
D 3 HOH A 99 488 229 HOH HOH . 
E 3 HOH B 1 389 1 HOH HOH . 
E 3 HOH B 2 390 2 HOH HOH . 
E 3 HOH B 3 391 3 HOH HOH . 
E 3 HOH B 4 392 4 HOH HOH . 
E 3 HOH B 5 393 5 HOH HOH . 
E 3 HOH B 6 394 9 HOH HOH . 
E 3 HOH B 7 395 10 HOH HOH . 
E 3 HOH B 8 396 12 HOH HOH . 
E 3 HOH B 9 397 13 HOH HOH . 
E 3 HOH B 10 398 14 HOH HOH . 
E 3 HOH B 11 399 20 HOH HOH . 
E 3 HOH B 12 400 23 HOH HOH . 
E 3 HOH B 13 401 24 HOH HOH . 
E 3 HOH B 14 402 28 HOH HOH . 
E 3 HOH B 15 403 29 HOH HOH . 
E 3 HOH B 16 404 32 HOH HOH . 
E 3 HOH B 17 405 35 HOH HOH . 
E 3 HOH B 18 406 37 HOH HOH . 
E 3 HOH B 19 407 38 HOH HOH . 
E 3 HOH B 20 408 39 HOH HOH . 
E 3 HOH B 21 409 40 HOH HOH . 
E 3 HOH B 22 410 41 HOH HOH . 
E 3 HOH B 23 411 42 HOH HOH . 
E 3 HOH B 24 412 44 HOH HOH . 
E 3 HOH B 25 413 45 HOH HOH . 
E 3 HOH B 26 414 47 HOH HOH . 
E 3 HOH B 27 415 49 HOH HOH . 
E 3 HOH B 28 416 50 HOH HOH . 
E 3 HOH B 29 417 51 HOH HOH . 
E 3 HOH B 30 418 52 HOH HOH . 
E 3 HOH B 31 419 54 HOH HOH . 
E 3 HOH B 32 420 56 HOH HOH . 
E 3 HOH B 33 421 58 HOH HOH . 
E 3 HOH B 34 422 59 HOH HOH . 
E 3 HOH B 35 423 60 HOH HOH . 
E 3 HOH B 36 424 62 HOH HOH . 
E 3 HOH B 37 425 64 HOH HOH . 
E 3 HOH B 38 426 68 HOH HOH . 
E 3 HOH B 39 427 71 HOH HOH . 
E 3 HOH B 40 428 72 HOH HOH . 
E 3 HOH B 41 429 73 HOH HOH . 
E 3 HOH B 42 430 76 HOH HOH . 
E 3 HOH B 43 431 78 HOH HOH . 
E 3 HOH B 44 432 79 HOH HOH . 
E 3 HOH B 45 433 80 HOH HOH . 
E 3 HOH B 46 434 81 HOH HOH . 
E 3 HOH B 47 435 82 HOH HOH . 
E 3 HOH B 48 436 84 HOH HOH . 
E 3 HOH B 49 437 86 HOH HOH . 
E 3 HOH B 50 438 89 HOH HOH . 
E 3 HOH B 51 439 90 HOH HOH . 
E 3 HOH B 52 440 91 HOH HOH . 
E 3 HOH B 53 441 94 HOH HOH . 
E 3 HOH B 54 442 96 HOH HOH . 
E 3 HOH B 55 443 98 HOH HOH . 
E 3 HOH B 56 444 100 HOH HOH . 
E 3 HOH B 57 445 101 HOH HOH . 
E 3 HOH B 58 446 102 HOH HOH . 
E 3 HOH B 59 447 103 HOH HOH . 
E 3 HOH B 60 448 106 HOH HOH . 
E 3 HOH B 61 449 107 HOH HOH . 
E 3 HOH B 62 450 110 HOH HOH . 
E 3 HOH B 63 451 111 HOH HOH . 
E 3 HOH B 64 452 112 HOH HOH . 
E 3 HOH B 65 453 113 HOH HOH . 
E 3 HOH B 66 454 115 HOH HOH . 
E 3 HOH B 67 455 116 HOH HOH . 
E 3 HOH B 68 456 118 HOH HOH . 
E 3 HOH B 69 457 119 HOH HOH . 
E 3 HOH B 70 458 121 HOH HOH . 
E 3 HOH B 71 459 122 HOH HOH . 
E 3 HOH B 72 460 124 HOH HOH . 
E 3 HOH B 73 461 125 HOH HOH . 
E 3 HOH B 74 462 126 HOH HOH . 
E 3 HOH B 75 463 130 HOH HOH . 
E 3 HOH B 76 464 137 HOH HOH . 
E 3 HOH B 77 465 138 HOH HOH . 
E 3 HOH B 78 466 139 HOH HOH . 
E 3 HOH B 79 467 147 HOH HOH . 
E 3 HOH B 80 468 148 HOH HOH . 
E 3 HOH B 81 469 149 HOH HOH . 
E 3 HOH B 82 470 162 HOH HOH . 
E 3 HOH B 83 471 166 HOH HOH . 
E 3 HOH B 84 472 167 HOH HOH . 
E 3 HOH B 85 473 168 HOH HOH . 
E 3 HOH B 86 474 169 HOH HOH . 
E 3 HOH B 87 475 170 HOH HOH . 
E 3 HOH B 88 476 171 HOH HOH . 
E 3 HOH B 89 477 172 HOH HOH . 
E 3 HOH B 90 478 173 HOH HOH . 
E 3 HOH B 91 479 174 HOH HOH . 
E 3 HOH B 92 480 175 HOH HOH . 
E 3 HOH B 93 481 176 HOH HOH . 
E 3 HOH B 94 482 177 HOH HOH . 
E 3 HOH B 95 483 178 HOH HOH . 
E 3 HOH B 96 484 179 HOH HOH . 
E 3 HOH B 97 485 180 HOH HOH . 
E 3 HOH B 98 486 181 HOH HOH . 
E 3 HOH B 99 487 182 HOH HOH . 
E 3 HOH B 100 488 183 HOH HOH . 
E 3 HOH B 101 489 184 HOH HOH . 
E 3 HOH B 102 490 185 HOH HOH . 
E 3 HOH B 103 491 186 HOH HOH . 
E 3 HOH B 104 492 187 HOH HOH . 
E 3 HOH B 105 493 188 HOH HOH . 
E 3 HOH B 106 494 189 HOH HOH . 
E 3 HOH B 107 495 196 HOH HOH . 
E 3 HOH B 108 496 197 HOH HOH . 
E 3 HOH B 109 497 198 HOH HOH . 
E 3 HOH B 110 498 199 HOH HOH . 
E 3 HOH B 111 499 200 HOH HOH . 
E 3 HOH B 112 500 201 HOH HOH . 
E 3 HOH B 113 501 202 HOH HOH . 
E 3 HOH B 114 502 203 HOH HOH . 
E 3 HOH B 115 503 204 HOH HOH . 
E 3 HOH B 116 504 206 HOH HOH . 
E 3 HOH B 117 505 207 HOH HOH . 
E 3 HOH B 118 506 208 HOH HOH . 
E 3 HOH B 119 507 209 HOH HOH . 
E 3 HOH B 120 508 211 HOH HOH . 
E 3 HOH B 121 509 212 HOH HOH . 
E 3 HOH B 122 510 213 HOH HOH . 
E 3 HOH B 123 511 214 HOH HOH . 
E 3 HOH B 124 512 222 HOH HOH . 
E 3 HOH B 125 513 223 HOH HOH . 
E 3 HOH B 126 514 224 HOH HOH . 
E 3 HOH B 127 515 225 HOH HOH . 
E 3 HOH B 128 516 226 HOH HOH . 
E 3 HOH B 129 517 227 HOH HOH . 
E 3 HOH B 130 518 228 HOH HOH . 
E 3 HOH B 131 519 230 HOH HOH . 
E 3 HOH B 132 520 231 HOH HOH . 
E 3 HOH B 133 521 232 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . C 2 34.572 21.713 -2.268 1 39.83 ? C1 EDO 389 A 1 
HETATM 2 O O1 EDO . . . C 2 33.575 22.383 -1.537 1 40.5 ? O1 EDO 389 A 1 
HETATM 3 C C2 EDO . . . C 2 34.276 20.259 -2.109 1 38.29 ? C2 EDO 389 A 1 
HETATM 4 O O2 EDO . . . C 2 35.395 19.443 -2.279 1 39.52 ? O2 EDO 389 A 1 
#
_model_server_stats.io_time_ms              62 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           4 
#