data_3P4R
#
_model_server_result.job_id            uk3Zwc4osFSC9uM6BFaeRQ 
_model_server_result.datetime_utc      '2025-03-27 03:35:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p4r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":601}' 
#
_entry.id    3P4R 
#
_exptl.entry_id    3P4R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P4R 
_cell.length_a            96.678 
_cell.length_b            138.016 
_cell.length_c            269.558 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P4R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M 1 1 
E,F,G,H,N,O,P,Q,R 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 57 B CYS 57 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? 
metalc ? metalc2 B SG CYS 62 B CYS 62 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? 
metalc ? metalc3 B SG CYS 65 B CYS 65 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc4 B SG CYS 77 B CYS 77 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? 
metalc ? metalc5 B SG CYS 148 B CYS 148 1_555 M FE2 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.136 ? 
metalc ? metalc6 B SG CYS 154 B CYS 154 1_555 M FE3 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? 
metalc ? metalc7 B SG CYS 158 B CYS 158 1_555 L FE4 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc8 B SG CYS 214 B CYS 214 1_555 M FE4 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? 
metalc ? metalc9 F SG CYS 57 N CYS 57 1_555 P FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? 
metalc ? metalc10 F SG CYS 62 N CYS 62 1_555 P FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc11 F SG CYS 65 N CYS 65 1_555 P FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? 
metalc ? metalc12 F SG CYS 77 N CYS 77 1_555 P FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc13 F SG CYS 148 N CYS 148 1_555 R FE2 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? 
metalc ? metalc14 F SG CYS 151 N CYS 151 1_555 R FE1 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.645 ? 
metalc ? metalc15 F SG CYS 154 N CYS 154 1_555 R FE3 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc16 F SG CYS 158 N CYS 158 1_555 Q FE4 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc17 F SG CYS 204 N CYS 204 1_555 Q FE1 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
metalc ? metalc18 F SG CYS 210 N CYS 210 1_555 Q FE3 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 92 n n 
PA O2A FAD sing 93 n n 
PA O5B FAD sing 94 n n 
PA O3P FAD sing 95 n n 
O2A HOA2 FAD sing 96 n n 
O5B C5B FAD sing 97 n n 
C5B C4B FAD sing 98 n n 
C5B H51A FAD sing 99 n n 
C5B H52A FAD sing 100 n n 
C4B O4B FAD sing 101 n n 
C4B C3B FAD sing 102 n n 
C4B H4B FAD sing 103 n n 
O4B C1B FAD sing 104 n n 
C3B O3B FAD sing 105 n n 
C3B C2B FAD sing 106 n n 
C3B H3B FAD sing 107 n n 
O3B HO3A FAD sing 108 n n 
C2B O2B FAD sing 109 n n 
C2B C1B FAD sing 110 n n 
C2B H2B FAD sing 111 n n 
O2B HO2A FAD sing 112 n n 
C1B N9A FAD sing 113 n n 
C1B H1B FAD sing 114 n n 
N9A C8A FAD sing 115 n y 
N9A C4A FAD sing 116 n y 
C8A N7A FAD doub 117 n y 
C8A H8A FAD sing 118 n n 
N7A C5A FAD sing 119 n y 
C5A C6A FAD sing 120 n y 
C5A C4A FAD doub 121 n y 
C6A N6A FAD sing 122 n n 
C6A N1A FAD doub 123 n y 
N6A H61A FAD sing 124 n n 
N6A H62A FAD sing 125 n n 
N1A C2A FAD sing 126 n y 
C2A N3A FAD doub 127 n y 
C2A H2A FAD sing 128 n n 
N3A C4A FAD sing 129 n y 
N1 C2 FAD sing 130 n n 
N1 C10 FAD doub 131 n n 
C2 O2 FAD doub 132 n n 
C2 N3 FAD sing 133 n n 
N3 C4 FAD sing 134 n n 
N3 HN3 FAD sing 135 n n 
C4 O4 FAD doub 136 n n 
C4 C4X FAD sing 137 n n 
C4X N5 FAD doub 138 n n 
C4X C10 FAD sing 139 n n 
N5 C5X FAD sing 140 n n 
C5X C6 FAD doub 141 n y 
C5X C9A FAD sing 142 n y 
C6 C7 FAD sing 143 n y 
C6 H6 FAD sing 144 n n 
C7 C7M FAD sing 145 n n 
C7 C8 FAD doub 146 n y 
C7M HM71 FAD sing 147 n n 
C7M HM72 FAD sing 148 n n 
C7M HM73 FAD sing 149 n n 
C8 C8M FAD sing 150 n n 
C8 C9 FAD sing 151 n y 
C8M HM81 FAD sing 152 n n 
C8M HM82 FAD sing 153 n n 
C8M HM83 FAD sing 154 n n 
C9 C9A FAD doub 155 n y 
C9 H9 FAD sing 156 n n 
C9A N10 FAD sing 157 n n 
N10 C10 FAD sing 158 n n 
N10 C1' FAD sing 159 n n 
C1' C2' FAD sing 160 n n 
C1' "H1'1" FAD sing 161 n n 
C1' "H1'2" FAD sing 162 n n 
C2' O2' FAD sing 163 n n 
C2' C3' FAD sing 164 n n 
C2' H2' FAD sing 165 n n 
O2' HO2' FAD sing 166 n n 
C3' O3' FAD sing 167 n n 
C3' C4' FAD sing 168 n n 
C3' H3' FAD sing 169 n n 
O3' HO3' FAD sing 170 n n 
C4' O4' FAD sing 171 n n 
C4' C5' FAD sing 172 n n 
C4' H4' FAD sing 173 n n 
O4' HO4' FAD sing 174 n n 
C5' O5' FAD sing 175 n n 
C5' "H5'1" FAD sing 176 n n 
C5' "H5'2" FAD sing 177 n n 
O5' P FAD sing 178 n n 
P O1P FAD doub 179 n n 
P O2P FAD sing 180 n n 
P O3P FAD sing 181 n n 
O2P HOP2 FAD sing 182 n n 
#
_atom_sites.entry_id                     3P4R 
_atom_sites.fract_transf_matrix[1][1]    0.010344 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007246 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00371 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 FAD A 1 601 601 FAD FAD . 
J 6 GUA A 1 577 1 GUA GUA . 
K 7 FES B 1 244 244 FES FES . 
L 8 F3S B 1 245 245 F3S F3S . 
M 9 SF4 B 1 246 246 SF4 SF4 . 
N 6 GUA M 1 577 1 GUA GUA . 
O 5 FAD M 1 601 601 FAD FAD . 
P 7 FES N 1 244 244 FES FES . 
Q 8 F3S N 1 245 245 F3S F3S . 
R 9 SF4 N 1 246 246 SF4 SF4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . O 5 14.94 -40.294 -20.076 1 89.87 ? PA FAD 601 M 1 
HETATM 2 O O1A FAD . . . O 5 15.921 -40.933 -19.117 1 89.31 ? O1A FAD 601 M 1 
HETATM 3 O O2A FAD . . . O 5 15.268 -40.252 -21.552 1 90.1 ? O2A FAD 601 M 1 
HETATM 4 O O5B FAD . . . O 5 14.652 -38.798 -19.592 1 91.21 ? O5B FAD 601 M 1 
HETATM 5 C C5B FAD . . . O 5 15.434 -38.333 -18.511 1 92.63 ? C5B FAD 601 M 1 
HETATM 6 C C4B FAD . . . O 5 15.516 -36.831 -18.563 1 93.38 ? C4B FAD 601 M 1 
HETATM 7 O O4B FAD . . . O 5 15.33 -36.42 -17.221 1 94.18 ? O4B FAD 601 M 1 
HETATM 8 C C3B FAD . . . O 5 16.906 -36.398 -19.009 1 93.74 ? C3B FAD 601 M 1 
HETATM 9 O O3B FAD . . . O 5 16.921 -35.054 -19.743 1 93.75 ? O3B FAD 601 M 1 
HETATM 10 C C2B FAD . . . O 5 17.579 -36.191 -17.601 1 94.09 ? C2B FAD 601 M 1 
HETATM 11 O O2B FAD . . . O 5 18.639 -35.373 -17.751 1 93.41 ? O2B FAD 601 M 1 
HETATM 12 C C1B FAD . . . O 5 16.392 -35.553 -16.823 1 94.78 ? C1B FAD 601 M 1 
HETATM 13 N N9A FAD . . . O 5 16.834 -35.855 -15.443 1 95.53 ? N9A FAD 601 M 1 
HETATM 14 C C8A FAD . . . O 5 17.204 -37.033 -14.919 1 95.87 ? C8A FAD 601 M 1 
HETATM 15 N N7A FAD . . . O 5 17.527 -36.844 -13.618 1 96.17 ? N7A FAD 601 M 1 
HETATM 16 C C5A FAD . . . O 5 17.349 -35.532 -13.344 1 96.26 ? C5A FAD 601 M 1 
HETATM 17 C C6A FAD . . . O 5 17.509 -34.742 -12.209 1 96.61 ? C6A FAD 601 M 1 
HETATM 18 N N6A FAD . . . O 5 17.939 -35.277 -11.038 1 96.98 ? N6A FAD 601 M 1 
HETATM 19 N N1A FAD . . . O 5 17.235 -33.417 -12.29 1 96.4 ? N1A FAD 601 M 1 
HETATM 20 C C2A FAD . . . O 5 16.813 -32.852 -13.434 1 96.17 ? C2A FAD 601 M 1 
HETATM 21 N N3A FAD . . . O 5 16.645 -33.59 -14.536 1 95.75 ? N3A FAD 601 M 1 
HETATM 22 C C4A FAD . . . O 5 16.91 -34.92 -14.506 1 95.81 ? C4A FAD 601 M 1 
HETATM 23 N N1 FAD . . . O 5 11.235 -47.929 -26.285 1 69.06 ? N1 FAD 601 M 1 
HETATM 24 C C2 FAD . . . O 5 10.462 -48.004 -27.402 1 69.9 ? C2 FAD 601 M 1 
HETATM 25 O O2 FAD . . . O 5 9.218 -47.869 -27.318 1 70.94 ? O2 FAD 601 M 1 
HETATM 26 N N3 FAD . . . O 5 11.018 -48.217 -28.621 1 69.46 ? N3 FAD 601 M 1 
HETATM 27 C C4 FAD . . . O 5 12.354 -48.367 -28.743 1 69.27 ? C4 FAD 601 M 1 
HETATM 28 O O4 FAD . . . O 5 12.863 -48.565 -29.862 1 69.92 ? O4 FAD 601 M 1 
HETATM 29 C C4X FAD . . . O 5 13.165 -48.303 -27.621 1 68.68 ? C4X FAD 601 M 1 
HETATM 30 N N5 FAD . . . O 5 14.498 -48.462 -27.771 1 67.12 ? N5 FAD 601 M 1 
HETATM 31 C C5X FAD . . . O 5 15.323 -48.404 -26.709 1 67.24 ? C5X FAD 601 M 1 
HETATM 32 C C6 FAD . . . O 5 16.689 -48.57 -26.897 1 66.4 ? C6 FAD 601 M 1 
HETATM 33 C C7 FAD . . . O 5 17.55 -48.516 -25.81 1 65.89 ? C7 FAD 601 M 1 
HETATM 34 C C7M FAD . . . O 5 19.03 -48.7 -26.039 1 66.08 ? C7M FAD 601 M 1 
HETATM 35 C C8 FAD . . . O 5 17.033 -48.294 -24.538 1 66.19 ? C8 FAD 601 M 1 
HETATM 36 C C8M FAD . . . O 5 17.906 -48.248 -23.32 1 65.69 ? C8M FAD 601 M 1 
HETATM 37 C C9 FAD . . . O 5 15.673 -48.13 -24.345 1 67.16 ? C9 FAD 601 M 1 
HETATM 38 C C9A FAD . . . O 5 14.815 -48.183 -25.43 1 68.36 ? C9A FAD 601 M 1 
HETATM 39 N N10 FAD . . . O 5 13.432 -48.001 -25.229 1 70.6 ? N10 FAD 601 M 1 
HETATM 40 C C10 FAD . . . O 5 12.584 -48.08 -26.368 1 69.68 ? C10 FAD 601 M 1 
HETATM 41 C C1' FAD . . . O 5 12.955 -47.816 -23.846 1 74.66 ? C1' FAD 601 M 1 
HETATM 42 C C2' FAD . . . O 5 12.345 -46.47 -23.454 1 78.86 ? C2' FAD 601 M 1 
HETATM 43 O O2' FAD . . . O 5 11.722 -45.856 -24.596 1 79.63 ? O2' FAD 601 M 1 
HETATM 44 C C3' FAD . . . O 5 13.33 -45.538 -22.722 1 81.51 ? C3' FAD 601 M 1 
HETATM 45 O O3' FAD . . . O 5 13.999 -46.245 -21.658 1 81.68 ? O3' FAD 601 M 1 
HETATM 46 C C4' FAD . . . O 5 12.616 -44.31 -22.144 1 83.27 ? C4' FAD 601 M 1 
HETATM 47 O O4' FAD . . . O 5 11.655 -43.819 -23.095 1 83.97 ? O4' FAD 601 M 1 
HETATM 48 C C5' FAD . . . O 5 13.586 -43.182 -21.773 1 84.91 ? C5' FAD 601 M 1 
HETATM 49 O O5' FAD . . . O 5 13.039 -41.896 -22.126 1 87.14 ? O5' FAD 601 M 1 
HETATM 50 P P FAD . . . O 5 12.378 -40.883 -21.042 1 88.03 ? P FAD 601 M 1 
HETATM 51 O O1P FAD . . . O 5 12.328 -39.496 -21.632 1 88.38 ? O1P FAD 601 M 1 
HETATM 52 O O2P FAD . . . O 5 11.101 -41.492 -20.522 1 87.9 ? O2P FAD 601 M 1 
HETATM 53 O O3P FAD . . . O 5 13.468 -40.904 -19.851 1 88.81 ? O3P FAD 601 M 1 
#
_model_server_stats.io_time_ms              37 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    34 
_model_server_stats.query_time_ms           323 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           53 
#