data_3P4S # _model_server_result.job_id D80cGmEXldEA7lFvhpp9QA _model_server_result.datetime_utc '2025-03-27 13:12:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p4s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":246}' # _entry.id 3P4S # _exptl.entry_id 3P4S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P4S _cell.length_a 98.065 _cell.length_b 139.006 _cell.length_c 276.476 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P4S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M 1 1 E,F,G,H,N,O,P,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 M N N ? 9 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B SG CYS 57 B CYS 57 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc2 B SG CYS 62 B CYS 62 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc3 B SG CYS 148 B CYS 148 1_555 M FE2 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? metalc ? metalc4 B SG CYS 154 B CYS 154 1_555 M FE3 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 L FE4 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc6 B SG CYS 210 B CYS 210 1_555 L FE3 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc7 B SG CYS 214 B CYS 214 1_555 M FE4 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 F SG CYS 57 N CYS 57 1_555 O FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? metalc ? metalc9 F SG CYS 62 N CYS 62 1_555 O FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc10 F SG CYS 65 N CYS 65 1_555 O FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc11 F SG CYS 77 N CYS 77 1_555 O FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? metalc ? metalc12 F SG CYS 148 N CYS 148 1_555 Q FE2 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc13 F SG CYS 154 N CYS 154 1_555 Q FE3 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc14 F SG CYS 158 N CYS 158 1_555 P FE4 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc15 F SG CYS 204 N CYS 204 1_555 P FE1 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc16 F SG CYS 214 N CYS 214 1_555 Q FE4 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 404 n n FE1 S3 SF4 sing 405 n n FE1 S4 SF4 sing 406 n n FE2 S1 SF4 sing 407 n n FE2 S3 SF4 sing 408 n n FE2 S4 SF4 sing 409 n n FE3 S1 SF4 sing 410 n n FE3 S2 SF4 sing 411 n n FE3 S4 SF4 sing 412 n n FE4 S1 SF4 sing 413 n n FE4 S2 SF4 sing 414 n n FE4 S3 SF4 sing 415 n n # _atom_sites.entry_id 3P4S _atom_sites.fract_transf_matrix[1][1] 0.010197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007194 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 FAD A 1 601 601 FAD FAD . J 6 3NP A 1 602 602 3NP 3NP . K 7 FES B 1 244 244 FES FES . L 8 F3S B 1 245 245 F3S F3S . M 9 SF4 B 1 246 246 SF4 SF4 . N 5 FAD M 1 601 601 FAD FAD . O 7 FES N 1 244 244 FES FES . P 8 F3S N 1 245 245 F3S F3S . Q 9 SF4 N 1 246 246 SF4 SF4 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . M 9 15.39 21.768 -36.182 1 79.27 ? FE1 SF4 246 B 1 HETATM 2 FE FE2 SF4 . . . M 9 17.799 21.048 -35.453 1 79.17 ? FE2 SF4 246 B 1 HETATM 3 FE FE3 SF4 . . . M 9 17.023 20.384 -37.88 1 80.2 ? FE3 SF4 246 B 1 HETATM 4 FE FE4 SF4 . . . M 9 17.675 22.845 -37.408 1 79.94 ? FE4 SF4 246 B 1 HETATM 5 S S1 SF4 . . . M 9 18.903 21.116 -37.547 1 80.15 ? S1 SF4 246 B 1 HETATM 6 S S2 SF4 . . . M 9 15.805 21.945 -38.419 1 79.15 ? S2 SF4 246 B 1 HETATM 7 S S3 SF4 . . . M 9 16.993 22.938 -35.281 1 80.46 ? S3 SF4 246 B 1 HETATM 8 S S4 SF4 . . . M 9 16.03 19.812 -35.96 1 79.34 ? S4 SF4 246 B 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 435 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #