data_3P4S
#
_model_server_result.job_id            xQlVBmQxsrfQ2tIX7WOz_A 
_model_server_result.datetime_utc      '2025-03-27 16:04:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p4s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":601}' 
#
_entry.id    3P4S 
#
_exptl.entry_id    3P4S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P4S 
_cell.length_a            98.065 
_cell.length_b            139.006 
_cell.length_c            276.476 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P4S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M 1 1 
E,F,G,H,N,O,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 57 B CYS 57 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc2 B SG CYS 62 B CYS 62 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc3 B SG CYS 148 B CYS 148 1_555 M FE2 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc4 B SG CYS 154 B CYS 154 1_555 M FE3 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 L FE4 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc6 B SG CYS 210 B CYS 210 1_555 L FE3 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc7 B SG CYS 214 B CYS 214 1_555 M FE4 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc8 F SG CYS 57 N CYS 57 1_555 O FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc9 F SG CYS 62 N CYS 62 1_555 O FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc10 F SG CYS 65 N CYS 65 1_555 O FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc11 F SG CYS 77 N CYS 77 1_555 O FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc12 F SG CYS 148 N CYS 148 1_555 Q FE2 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc13 F SG CYS 154 N CYS 154 1_555 Q FE3 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc14 F SG CYS 158 N CYS 158 1_555 P FE4 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc15 F SG CYS 204 N CYS 204 1_555 P FE1 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc16 F SG CYS 214 N CYS 214 1_555 Q FE4 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 104 n n 
PA O2A FAD sing 105 n n 
PA O5B FAD sing 106 n n 
PA O3P FAD sing 107 n n 
O2A HOA2 FAD sing 108 n n 
O5B C5B FAD sing 109 n n 
C5B C4B FAD sing 110 n n 
C5B H51A FAD sing 111 n n 
C5B H52A FAD sing 112 n n 
C4B O4B FAD sing 113 n n 
C4B C3B FAD sing 114 n n 
C4B H4B FAD sing 115 n n 
O4B C1B FAD sing 116 n n 
C3B O3B FAD sing 117 n n 
C3B C2B FAD sing 118 n n 
C3B H3B FAD sing 119 n n 
O3B HO3A FAD sing 120 n n 
C2B O2B FAD sing 121 n n 
C2B C1B FAD sing 122 n n 
C2B H2B FAD sing 123 n n 
O2B HO2A FAD sing 124 n n 
C1B N9A FAD sing 125 n n 
C1B H1B FAD sing 126 n n 
N9A C8A FAD sing 127 n y 
N9A C4A FAD sing 128 n y 
C8A N7A FAD doub 129 n y 
C8A H8A FAD sing 130 n n 
N7A C5A FAD sing 131 n y 
C5A C6A FAD sing 132 n y 
C5A C4A FAD doub 133 n y 
C6A N6A FAD sing 134 n n 
C6A N1A FAD doub 135 n y 
N6A H61A FAD sing 136 n n 
N6A H62A FAD sing 137 n n 
N1A C2A FAD sing 138 n y 
C2A N3A FAD doub 139 n y 
C2A H2A FAD sing 140 n n 
N3A C4A FAD sing 141 n y 
N1 C2 FAD sing 142 n n 
N1 C10 FAD doub 143 n n 
C2 O2 FAD doub 144 n n 
C2 N3 FAD sing 145 n n 
N3 C4 FAD sing 146 n n 
N3 HN3 FAD sing 147 n n 
C4 O4 FAD doub 148 n n 
C4 C4X FAD sing 149 n n 
C4X N5 FAD doub 150 n n 
C4X C10 FAD sing 151 n n 
N5 C5X FAD sing 152 n n 
C5X C6 FAD doub 153 n y 
C5X C9A FAD sing 154 n y 
C6 C7 FAD sing 155 n y 
C6 H6 FAD sing 156 n n 
C7 C7M FAD sing 157 n n 
C7 C8 FAD doub 158 n y 
C7M HM71 FAD sing 159 n n 
C7M HM72 FAD sing 160 n n 
C7M HM73 FAD sing 161 n n 
C8 C8M FAD sing 162 n n 
C8 C9 FAD sing 163 n y 
C8M HM81 FAD sing 164 n n 
C8M HM82 FAD sing 165 n n 
C8M HM83 FAD sing 166 n n 
C9 C9A FAD doub 167 n y 
C9 H9 FAD sing 168 n n 
C9A N10 FAD sing 169 n n 
N10 C10 FAD sing 170 n n 
N10 C1' FAD sing 171 n n 
C1' C2' FAD sing 172 n n 
C1' "H1'1" FAD sing 173 n n 
C1' "H1'2" FAD sing 174 n n 
C2' O2' FAD sing 175 n n 
C2' C3' FAD sing 176 n n 
C2' H2' FAD sing 177 n n 
O2' HO2' FAD sing 178 n n 
C3' O3' FAD sing 179 n n 
C3' C4' FAD sing 180 n n 
C3' H3' FAD sing 181 n n 
O3' HO3' FAD sing 182 n n 
C4' O4' FAD sing 183 n n 
C4' C5' FAD sing 184 n n 
C4' H4' FAD sing 185 n n 
O4' HO4' FAD sing 186 n n 
C5' O5' FAD sing 187 n n 
C5' "H5'1" FAD sing 188 n n 
C5' "H5'2" FAD sing 189 n n 
O5' P FAD sing 190 n n 
P O1P FAD doub 191 n n 
P O2P FAD sing 192 n n 
P O3P FAD sing 193 n n 
O2P HOP2 FAD sing 194 n n 
#
_atom_sites.entry_id                     3P4S 
_atom_sites.fract_transf_matrix[1][1]    0.010197 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007194 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003617 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 FAD A 1 601 601 FAD FAD . 
J 6 3NP A 1 602 602 3NP 3NP . 
K 7 FES B 1 244 244 FES FES . 
L 8 F3S B 1 245 245 F3S F3S . 
M 9 SF4 B 1 246 246 SF4 SF4 . 
N 5 FAD M 1 601 601 FAD FAD . 
O 7 FES N 1 244 244 FES FES . 
P 8 F3S N 1 245 245 F3S F3S . 
Q 9 SF4 N 1 246 246 SF4 SF4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . I 5 11.091 23.016 -15.596 1 60.91 ? PA FAD 601 A 1 
HETATM 2 O O1A FAD . . . I 5 10.101 23.978 -16.184 1 62.04 ? O1A FAD 601 A 1 
HETATM 3 O O2A FAD . . . I 5 12.451 22.928 -16.215 1 62.16 ? O2A FAD 601 A 1 
HETATM 4 O O5B FAD . . . I 5 10.457 21.537 -15.573 1 61.78 ? O5B FAD 601 A 1 
HETATM 5 C C5B FAD . . . I 5 9.132 21.287 -16.041 1 63.14 ? C5B FAD 601 A 1 
HETATM 6 C C4B FAD . . . I 5 8.952 19.795 -16.318 1 64.21 ? C4B FAD 601 A 1 
HETATM 7 O O4B FAD . . . I 5 7.867 19.254 -15.556 1 64.68 ? O4B FAD 601 A 1 
HETATM 8 C C3B FAD . . . I 5 8.625 19.529 -17.784 1 64.43 ? C3B FAD 601 A 1 
HETATM 9 O O3B FAD . . . I 5 9.437 18.429 -18.211 1 64.01 ? O3B FAD 601 A 1 
HETATM 10 C C2B FAD . . . I 5 7.166 19.103 -17.787 1 64.56 ? C2B FAD 601 A 1 
HETATM 11 O O2B FAD . . . I 5 6.915 18.111 -18.783 1 65.06 ? O2B FAD 601 A 1 
HETATM 12 C C1B FAD . . . I 5 7.031 18.475 -16.417 1 64.92 ? C1B FAD 601 A 1 
HETATM 13 N N9A FAD . . . I 5 5.623 18.433 -15.948 1 65.36 ? N9A FAD 601 A 1 
HETATM 14 C C8A FAD . . . I 5 4.878 19.472 -15.546 1 65.36 ? C8A FAD 601 A 1 
HETATM 15 N N7A FAD . . . I 5 3.658 19.014 -15.188 1 65.62 ? N7A FAD 601 A 1 
HETATM 16 C C5A FAD . . . I 5 3.65 17.676 -15.366 1 65.5 ? C5A FAD 601 A 1 
HETATM 17 C C6A FAD . . . I 5 2.697 16.681 -15.167 1 65.59 ? C6A FAD 601 A 1 
HETATM 18 N N6A FAD . . . I 5 1.467 17.004 -14.698 1 65.93 ? N6A FAD 601 A 1 
HETATM 19 N N1A FAD . . . I 5 3.004 15.391 -15.449 1 65.3 ? N1A FAD 601 A 1 
HETATM 20 C C2A FAD . . . I 5 4.221 15.067 -15.913 1 65.29 ? C2A FAD 601 A 1 
HETATM 21 N N3A FAD . . . I 5 5.156 16.008 -16.11 1 65.39 ? N3A FAD 601 A 1 
HETATM 22 C C4A FAD . . . I 5 4.895 17.316 -15.845 1 65.4 ? C4A FAD 601 A 1 
HETATM 23 N N1 FAD . . . I 5 17.124 31.22 -13.815 1 75.33 ? N1 FAD 601 A 1 
HETATM 24 C C2 FAD . . . I 5 18.437 31.476 -13.659 1 75.12 ? C2 FAD 601 A 1 
HETATM 25 O O2 FAD . . . I 5 18.989 31.071 -12.622 1 75.32 ? O2 FAD 601 A 1 
HETATM 26 N N3 FAD . . . I 5 19.136 32.15 -14.603 1 75.11 ? N3 FAD 601 A 1 
HETATM 27 C C4 FAD . . . I 5 18.509 32.579 -15.726 1 75.64 ? C4 FAD 601 A 1 
HETATM 28 O O4 FAD . . . I 5 19.133 33.206 -16.604 1 76.4 ? O4 FAD 601 A 1 
HETATM 29 C C4X FAD . . . I 5 17.154 32.327 -15.909 1 75.48 ? C4X FAD 601 A 1 
HETATM 30 N N5 FAD . . . I 5 16.52 32.751 -17.03 1 75.37 ? N5 FAD 601 A 1 
HETATM 31 C C5X FAD . . . I 5 15.203 32.506 -17.226 1 75.25 ? C5X FAD 601 A 1 
HETATM 32 C C6 FAD . . . I 5 14.586 32.959 -18.392 1 75.41 ? C6 FAD 601 A 1 
HETATM 33 C C7 FAD . . . I 5 13.228 32.712 -18.598 1 75.54 ? C7 FAD 601 A 1 
HETATM 34 C C7M FAD . . . I 5 12.562 33.197 -19.862 1 75.51 ? C7M FAD 601 A 1 
HETATM 35 C C8 FAD . . . I 5 12.498 32.015 -17.64 1 75.19 ? C8 FAD 601 A 1 
HETATM 36 C C8M FAD . . . I 5 11.036 31.745 -17.828 1 75.27 ? C8M FAD 601 A 1 
HETATM 37 C C9 FAD . . . I 5 13.105 31.564 -16.476 1 74.8 ? C9 FAD 601 A 1 
HETATM 38 C C9A FAD . . . I 5 14.458 31.809 -16.268 1 74.6 ? C9A FAD 601 A 1 
HETATM 39 N N10 FAD . . . I 5 15.084 31.36 -15.09 1 73.89 ? N10 FAD 601 A 1 
HETATM 40 C C10 FAD . . . I 5 16.463 31.629 -14.922 1 75 ? C10 FAD 601 A 1 
HETATM 41 C C1' FAD . . . I 5 14.325 30.6 -14.084 1 71.71 ? C1' FAD 601 A 1 
HETATM 42 C C2' FAD . . . I 5 14.685 29.106 -14.209 1 69.48 ? C2' FAD 601 A 1 
HETATM 43 O O2' FAD . . . I 5 15.284 28.804 -15.479 1 69.4 ? O2' FAD 601 A 1 
HETATM 44 C C3' FAD . . . I 5 13.499 28.178 -13.998 1 67.98 ? C3' FAD 601 A 1 
HETATM 45 O O3' FAD . . . I 5 12.934 28.486 -12.73 1 69.29 ? O3' FAD 601 A 1 
HETATM 46 C C4' FAD . . . I 5 13.952 26.724 -13.998 1 66.76 ? C4' FAD 601 A 1 
HETATM 47 O O4' FAD . . . I 5 14.192 26.336 -15.351 1 67.6 ? O4' FAD 601 A 1 
HETATM 48 C C5' FAD . . . I 5 12.961 25.741 -13.369 1 64.85 ? C5' FAD 601 A 1 
HETATM 49 O O5' FAD . . . I 5 13.46 24.408 -13.545 1 63.05 ? O5' FAD 601 A 1 
HETATM 50 P P FAD . . . I 5 12.567 23.125 -13.169 1 61.85 ? P FAD 601 A 1 
HETATM 51 O O1P FAD . . . I 5 13.248 21.866 -13.647 1 61.09 ? O1P FAD 601 A 1 
HETATM 52 O O2P FAD . . . I 5 12.168 23.251 -11.714 1 61.79 ? O2P FAD 601 A 1 
HETATM 53 O O3P FAD . . . I 5 11.236 23.391 -14.044 1 61.59 ? O3P FAD 601 A 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           331 
_model_server_stats.encode_time_ms          13 
_model_server_stats.element_count           53 
#