data_3P4S
#
_model_server_result.job_id            l6fRLq5TtbEGTcWCriNTXw 
_model_server_result.datetime_utc      '2025-03-27 09:05:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p4s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"N","auth_seq_id":601}' 
#
_entry.id    3P4S 
#
_exptl.entry_id    3P4S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              785.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN-ADENINE DINUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P4S 
_cell.length_a            98.065 
_cell.length_b            139.006 
_cell.length_c            276.476 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P4S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M 1 1 
E,F,G,H,N,O,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B SG CYS 57 B CYS 57 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc2 B SG CYS 62 B CYS 62 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc3 B SG CYS 148 B CYS 148 1_555 M FE2 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc4 B SG CYS 154 B CYS 154 1_555 M FE3 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc5 B SG CYS 158 B CYS 158 1_555 L FE4 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc6 B SG CYS 210 B CYS 210 1_555 L FE3 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? 
metalc ? metalc7 B SG CYS 214 B CYS 214 1_555 M FE4 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
metalc ? metalc8 F SG CYS 57 N CYS 57 1_555 O FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.695 ? 
metalc ? metalc9 F SG CYS 62 N CYS 62 1_555 O FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc10 F SG CYS 65 N CYS 65 1_555 O FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc11 F SG CYS 77 N CYS 77 1_555 O FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.673 ? 
metalc ? metalc12 F SG CYS 148 N CYS 148 1_555 Q FE2 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc13 F SG CYS 154 N CYS 154 1_555 Q FE3 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc14 F SG CYS 158 N CYS 158 1_555 P FE4 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? 
metalc ? metalc15 F SG CYS 204 N CYS 204 1_555 P FE1 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? 
metalc ? metalc16 F SG CYS 214 N CYS 214 1_555 Q FE4 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
#
_chem_comp.formula           'C27 H33 N9 O15 P2' 
_chem_comp.formula_weight    785.55 
_chem_comp.id                FAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN-ADENINE DINUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A FAD doub 104 n n 
PA O2A FAD sing 105 n n 
PA O5B FAD sing 106 n n 
PA O3P FAD sing 107 n n 
O2A HOA2 FAD sing 108 n n 
O5B C5B FAD sing 109 n n 
C5B C4B FAD sing 110 n n 
C5B H51A FAD sing 111 n n 
C5B H52A FAD sing 112 n n 
C4B O4B FAD sing 113 n n 
C4B C3B FAD sing 114 n n 
C4B H4B FAD sing 115 n n 
O4B C1B FAD sing 116 n n 
C3B O3B FAD sing 117 n n 
C3B C2B FAD sing 118 n n 
C3B H3B FAD sing 119 n n 
O3B HO3A FAD sing 120 n n 
C2B O2B FAD sing 121 n n 
C2B C1B FAD sing 122 n n 
C2B H2B FAD sing 123 n n 
O2B HO2A FAD sing 124 n n 
C1B N9A FAD sing 125 n n 
C1B H1B FAD sing 126 n n 
N9A C8A FAD sing 127 n y 
N9A C4A FAD sing 128 n y 
C8A N7A FAD doub 129 n y 
C8A H8A FAD sing 130 n n 
N7A C5A FAD sing 131 n y 
C5A C6A FAD sing 132 n y 
C5A C4A FAD doub 133 n y 
C6A N6A FAD sing 134 n n 
C6A N1A FAD doub 135 n y 
N6A H61A FAD sing 136 n n 
N6A H62A FAD sing 137 n n 
N1A C2A FAD sing 138 n y 
C2A N3A FAD doub 139 n y 
C2A H2A FAD sing 140 n n 
N3A C4A FAD sing 141 n y 
N1 C2 FAD sing 142 n n 
N1 C10 FAD doub 143 n n 
C2 O2 FAD doub 144 n n 
C2 N3 FAD sing 145 n n 
N3 C4 FAD sing 146 n n 
N3 HN3 FAD sing 147 n n 
C4 O4 FAD doub 148 n n 
C4 C4X FAD sing 149 n n 
C4X N5 FAD doub 150 n n 
C4X C10 FAD sing 151 n n 
N5 C5X FAD sing 152 n n 
C5X C6 FAD doub 153 n y 
C5X C9A FAD sing 154 n y 
C6 C7 FAD sing 155 n y 
C6 H6 FAD sing 156 n n 
C7 C7M FAD sing 157 n n 
C7 C8 FAD doub 158 n y 
C7M HM71 FAD sing 159 n n 
C7M HM72 FAD sing 160 n n 
C7M HM73 FAD sing 161 n n 
C8 C8M FAD sing 162 n n 
C8 C9 FAD sing 163 n y 
C8M HM81 FAD sing 164 n n 
C8M HM82 FAD sing 165 n n 
C8M HM83 FAD sing 166 n n 
C9 C9A FAD doub 167 n y 
C9 H9 FAD sing 168 n n 
C9A N10 FAD sing 169 n n 
N10 C10 FAD sing 170 n n 
N10 C1' FAD sing 171 n n 
C1' C2' FAD sing 172 n n 
C1' "H1'1" FAD sing 173 n n 
C1' "H1'2" FAD sing 174 n n 
C2' O2' FAD sing 175 n n 
C2' C3' FAD sing 176 n n 
C2' H2' FAD sing 177 n n 
O2' HO2' FAD sing 178 n n 
C3' O3' FAD sing 179 n n 
C3' C4' FAD sing 180 n n 
C3' H3' FAD sing 181 n n 
O3' HO3' FAD sing 182 n n 
C4' O4' FAD sing 183 n n 
C4' C5' FAD sing 184 n n 
C4' H4' FAD sing 185 n n 
O4' HO4' FAD sing 186 n n 
C5' O5' FAD sing 187 n n 
C5' "H5'1" FAD sing 188 n n 
C5' "H5'2" FAD sing 189 n n 
O5' P FAD sing 190 n n 
P O1P FAD doub 191 n n 
P O2P FAD sing 192 n n 
P O3P FAD sing 193 n n 
O2P HOP2 FAD sing 194 n n 
#
_atom_sites.entry_id                     3P4S 
_atom_sites.fract_transf_matrix[1][1]    0.010197 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007194 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003617 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 FAD A 1 601 601 FAD FAD . 
J 6 3NP A 1 602 602 3NP 3NP . 
K 7 FES B 1 244 244 FES FES . 
L 8 F3S B 1 245 245 F3S F3S . 
M 9 SF4 B 1 246 246 SF4 SF4 . 
N 5 FAD M 1 601 601 FAD FAD . 
O 7 FES N 1 244 244 FES FES . 
P 8 F3S N 1 245 245 F3S F3S . 
Q 9 SF4 N 1 246 246 SF4 SF4 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA FAD . . . N 5 17.311 -41.019 -20.052 1 137.67 ? PA FAD 601 M 1 
HETATM 2 O O1A FAD . . . N 5 18.363 -41.677 -19.182 1 137.33 ? O1A FAD 601 M 1 
HETATM 3 O O2A FAD . . . N 5 17.663 -40.637 -21.472 1 137.48 ? O2A FAD 601 M 1 
HETATM 4 O O5B FAD . . . N 5 16.779 -39.705 -19.292 1 138.36 ? O5B FAD 601 M 1 
HETATM 5 C C5B FAD . . . N 5 17.362 -39.307 -18.054 1 139.75 ? C5B FAD 601 M 1 
HETATM 6 C C4B FAD . . . N 5 17.951 -37.91 -18.175 1 140.55 ? C4B FAD 601 M 1 
HETATM 7 O O4B FAD . . . N 5 17.945 -37.299 -16.888 1 141.19 ? O4B FAD 601 M 1 
HETATM 8 C C3B FAD . . . N 5 19.271 -37.432 -18.79 1 140.94 ? C3B FAD 601 M 1 
HETATM 9 O O3B FAD . . . N 5 18.981 -36.163 -19.453 1 140.86 ? O3B FAD 601 M 1 
HETATM 10 C C2B FAD . . . N 5 20.132 -37.191 -17.515 1 141.27 ? C2B FAD 601 M 1 
HETATM 11 O O2B FAD . . . N 5 21.019 -36.163 -17.666 1 141.23 ? O2B FAD 601 M 1 
HETATM 12 C C1B FAD . . . N 5 19.151 -36.563 -16.671 1 141.72 ? C1B FAD 601 M 1 
HETATM 13 N N9A FAD . . . N 5 19.521 -36.609 -15.226 1 142.53 ? N9A FAD 601 M 1 
HETATM 14 C C8A FAD . . . N 5 19.841 -37.711 -14.531 1 142.72 ? C8A FAD 601 M 1 
HETATM 15 N N7A FAD . . . N 5 20.105 -37.372 -13.251 1 143.11 ? N7A FAD 601 M 1 
HETATM 16 C C5A FAD . . . N 5 19.934 -36.039 -13.138 1 143.38 ? C5A FAD 601 M 1 
HETATM 17 C C6A FAD . . . N 5 20.06 -35.145 -12.075 1 143.7 ? C6A FAD 601 M 1 
HETATM 18 N N6A FAD . . . N 5 20.424 -35.592 -10.848 1 143.87 ? N6A FAD 601 M 1 
HETATM 19 N N1A FAD . . . N 5 19.814 -33.825 -12.275 1 143.82 ? N1A FAD 601 M 1 
HETATM 20 C C2A FAD . . . N 5 19.45 -33.377 -13.488 1 143.62 ? C2A FAD 601 M 1 
HETATM 21 N N3A FAD . . . N 5 19.324 -34.224 -14.527 1 143.28 ? N3A FAD 601 M 1 
HETATM 22 C C4A FAD . . . N 5 19.559 -35.559 -14.385 1 143.06 ? C4A FAD 601 M 1 
HETATM 23 N N1 FAD . . . N 5 12.697 -48.587 -26.25 1 125.44 ? N1 FAD 601 M 1 
HETATM 24 C C2 FAD . . . N 5 11.922 -48.586 -27.35 1 125.33 ? C2 FAD 601 M 1 
HETATM 25 O O2 FAD . . . N 5 10.712 -48.337 -27.227 1 125.34 ? O2 FAD 601 M 1 
HETATM 26 N N3 FAD . . . N 5 12.44 -48.844 -28.571 1 125.23 ? N3 FAD 601 M 1 
HETATM 27 C C4 FAD . . . N 5 13.754 -49.107 -28.718 1 125.14 ? C4 FAD 601 M 1 
HETATM 28 O O4 FAD . . . N 5 14.223 -49.344 -29.849 1 125.08 ? O4 FAD 601 M 1 
HETATM 29 C C4X FAD . . . N 5 14.574 -49.115 -27.598 1 125.12 ? C4X FAD 601 M 1 
HETATM 30 N N5 FAD . . . N 5 15.891 -49.384 -27.735 1 124.6 ? N5 FAD 601 M 1 
HETATM 31 C C5X FAD . . . N 5 16.705 -49.396 -26.662 1 124.66 ? C5X FAD 601 M 1 
HETATM 32 C C6 FAD . . . N 5 18.053 -49.678 -26.853 1 124.23 ? C6 FAD 601 M 1 
HETATM 33 C C7 FAD . . . N 5 18.912 -49.695 -25.76 1 124.26 ? C7 FAD 601 M 1 
HETATM 34 C C7M FAD . . . N 5 20.371 -49.998 -25.985 1 124.12 ? C7M FAD 601 M 1 
HETATM 35 C C8 FAD . . . N 5 18.414 -49.434 -24.485 1 124.59 ? C8 FAD 601 M 1 
HETATM 36 C C8M FAD . . . N 5 19.3 -49.464 -23.271 1 124.63 ? C8M FAD 601 M 1 
HETATM 37 C C9 FAD . . . N 5 17.069 -49.153 -24.291 1 124.84 ? C9 FAD 601 M 1 
HETATM 38 C C9A FAD . . . N 5 16.207 -49.133 -25.379 1 125.35 ? C9A FAD 601 M 1 
HETATM 39 N N10 FAD . . . N 5 14.836 -48.839 -25.189 1 126.29 ? N10 FAD 601 M 1 
HETATM 40 C C10 FAD . . . N 5 14.017 -48.848 -26.344 1 125.61 ? C10 FAD 601 M 1 
HETATM 41 C C1' FAD . . . N 5 14.305 -48.569 -23.831 1 128.13 ? C1' FAD 601 M 1 
HETATM 42 C C2' FAD . . . N 5 13.746 -47.15 -23.587 1 130.27 ? C2' FAD 601 M 1 
HETATM 43 O O2' FAD . . . N 5 13.303 -46.542 -24.811 1 130.25 ? O2' FAD 601 M 1 
HETATM 44 C C3' FAD . . . N 5 14.68 -46.156 -22.872 1 131.95 ? C3' FAD 601 M 1 
HETATM 45 O O3' FAD . . . N 5 15.539 -46.818 -21.929 1 131.89 ? O3' FAD 601 M 1 
HETATM 46 C C4' FAD . . . N 5 13.883 -45.057 -22.148 1 133.44 ? C4' FAD 601 M 1 
HETATM 47 O O4' FAD . . . N 5 12.658 -44.775 -22.846 1 133.49 ? O4' FAD 601 M 1 
HETATM 48 C C5' FAD . . . N 5 14.68 -43.758 -21.983 1 134.78 ? C5' FAD 601 M 1 
HETATM 49 O O5' FAD . . . N 5 13.906 -42.787 -21.265 1 136.18 ? O5' FAD 601 M 1 
HETATM 50 P P FAD . . . N 5 14.56 -41.452 -20.629 1 136.99 ? P FAD 601 M 1 
HETATM 51 O O1P FAD . . . N 5 14.745 -40.464 -21.755 1 136.87 ? O1P FAD 601 M 1 
HETATM 52 O O2P FAD . . . N 5 13.731 -41.057 -19.428 1 137.31 ? O2P FAD 601 M 1 
HETATM 53 O O3P FAD . . . N 5 15.999 -41.957 -20.086 1 137.17 ? O3P FAD 601 M 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           349 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           53 
#