data_3P4W
#
_model_server_result.job_id            HavIKQ1QQwroA4K7Cmh-gA 
_model_server_result.datetime_utc      '2024-11-04 22:44:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p4w 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"V","auth_seq_id":321}' 
#
_entry.id    3P4W 
#
_exptl.entry_id    3P4W 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              622.834 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.13 
_cell.angle_gamma         90 
_cell.entry_id            3P4W 
_cell.length_a            181.12 
_cell.length_b            132.37 
_cell.length_c            159.69 
_cell.Z_PDB               20 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P4W 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    pentameric 
_pdbx_struct_assembly.oligomeric_count      5 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 I N N 
? 4 J N N 
? 4 M N N 
? 4 N N N 
? 4 R N N 
? 4 S N N 
? 4 U N N 
? 4 V N N 
? 4 Y N N 
? 4 Z N N 
#
_chem_comp.formula           'C32 H65 N O8 P 1' 
_chem_comp.formula_weight    622.834 
_chem_comp.id                PLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIUNDECYL PHOSPHATIDYL CHOLINE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 PLC sing 353 n n 
C1 O3P PLC sing 354 n n 
C1 H11 PLC sing 355 n n 
C1 H12 PLC sing 356 n n 
C2 C3 PLC sing 357 n n 
C2 O2 PLC sing 358 n n 
C2 H2 PLC sing 359 n n 
C3 O3 PLC sing 360 n n 
C3 H31 PLC sing 361 n n 
C3 H32 PLC sing 362 n n 
C4 C5 PLC sing 363 n n 
C4 O4P PLC sing 364 n n 
C4 H41 PLC sing 365 n n 
C4 H42 PLC sing 366 n n 
C5 N PLC sing 367 n n 
C5 H51 PLC sing 368 n n 
C5 H52 PLC sing 369 n n 
C6 N PLC sing 370 n n 
C6 H61 PLC sing 371 n n 
C6 H62 PLC sing 372 n n 
C6 H63 PLC sing 373 n n 
C7 N PLC sing 374 n n 
C7 H71 PLC sing 375 n n 
C7 H72 PLC sing 376 n n 
C7 H73 PLC sing 377 n n 
C8 N PLC sing 378 n n 
C8 H81 PLC sing 379 n n 
C8 H82 PLC sing 380 n n 
C8 H83 PLC sing 381 n n 
C' C1' PLC sing 382 n n 
C' O' PLC doub 383 n n 
C' O2 PLC sing 384 n n 
C1' C2' PLC sing 385 n n 
C1' "H1'1" PLC sing 386 n n 
C1' "H1'2" PLC sing 387 n n 
C2' C3' PLC sing 388 n n 
C2' "H2'1" PLC sing 389 n n 
C2' "H2'2" PLC sing 390 n n 
C3' C4' PLC sing 391 n n 
C3' "H3'1" PLC sing 392 n n 
C3' "H3'2" PLC sing 393 n n 
C4' C5' PLC sing 394 n n 
C4' "H4'1" PLC sing 395 n n 
C4' "H4'2" PLC sing 396 n n 
C5' C6' PLC sing 397 n n 
C5' "H5'1" PLC sing 398 n n 
C5' "H5'2" PLC sing 399 n n 
C6' C7' PLC sing 400 n n 
C6' "H6'1" PLC sing 401 n n 
C6' "H6'2" PLC sing 402 n n 
C7' C8' PLC sing 403 n n 
C7' "H7'1" PLC sing 404 n n 
C7' "H7'2" PLC sing 405 n n 
C8' C9' PLC sing 406 n n 
C8' "H8'1" PLC sing 407 n n 
C8' "H8'2" PLC sing 408 n n 
C9' CA' PLC sing 409 n n 
C9' "H9'1" PLC sing 410 n n 
C9' "H9'2" PLC sing 411 n n 
CA' CB' PLC sing 412 n n 
CA' "HT'1" PLC sing 413 n n 
CA' "HT'2" PLC sing 414 n n 
CB' "HE'1" PLC sing 415 n n 
CB' "HE'2" PLC sing 416 n n 
CB' "HE'3" PLC sing 417 n n 
CB C1B PLC sing 418 n n 
CB OB PLC doub 419 n n 
CB O3 PLC sing 420 n n 
C1B C2B PLC sing 421 n n 
C1B H1A1 PLC sing 422 n n 
C1B H1A2 PLC sing 423 n n 
C2B C3B PLC sing 424 n n 
C2B H2A1 PLC sing 425 n n 
C2B H2A2 PLC sing 426 n n 
C3B C4B PLC sing 427 n n 
C3B H3A1 PLC sing 428 n n 
C3B H3A2 PLC sing 429 n n 
C4B C5B PLC sing 430 n n 
C4B H4A1 PLC sing 431 n n 
C4B H4A2 PLC sing 432 n n 
C5B C6B PLC sing 433 n n 
C5B H5A1 PLC sing 434 n n 
C5B H5A2 PLC sing 435 n n 
C6B C7B PLC sing 436 n n 
C6B H6A1 PLC sing 437 n n 
C6B H6A2 PLC sing 438 n n 
C7B C8B PLC sing 439 n n 
C7B H7A1 PLC sing 440 n n 
C7B H7A2 PLC sing 441 n n 
C8B C9B PLC sing 442 n n 
C8B H8A1 PLC sing 443 n n 
C8B H8A2 PLC sing 444 n n 
C9B CAA PLC sing 445 n n 
C9B H9A1 PLC sing 446 n n 
C9B H9A2 PLC sing 447 n n 
CAA CBA PLC sing 448 n n 
CAA HTA1 PLC sing 449 n n 
CAA HTA2 PLC sing 450 n n 
CBA HEA1 PLC sing 451 n n 
CBA HEA2 PLC sing 452 n n 
CBA HEA3 PLC sing 453 n n 
O1P P PLC doub 454 n n 
O2P P PLC sing 455 n n 
O2P HOP2 PLC sing 456 n n 
O3P P PLC sing 457 n n 
O4P P PLC sing 458 n n 
#
_atom_sites.entry_id                     3P4W 
_atom_sites.fract_transf_matrix[1][1]    0.005521 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001187 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007555 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006405 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 LMT A 1 501 501 LMT LMT . 
G 2 LMT A 1 502 502 LMT LMT . 
H 3 DSF A 1 319 1 DSF DSF . 
I 4 PLC A 1 320 1 PLC PLC . 
J 4 PLC A 1 321 3 PLC PLC . 
K 2 LMT B 1 501 501 LMT LMT . 
L 3 DSF B 1 319 1 DSF DSF . 
M 4 PLC B 1 320 1 PLC PLC . 
N 4 PLC B 1 321 3 PLC PLC . 
O 2 LMT C 1 501 501 LMT LMT . 
P 2 LMT C 1 319 501 LMT LMT . 
Q 3 DSF C 1 320 1 DSF DSF . 
R 4 PLC C 1 321 1 PLC PLC . 
S 4 PLC C 1 322 3 PLC PLC . 
T 3 DSF D 1 319 1 DSF DSF . 
U 4 PLC D 1 320 1 PLC PLC . 
V 4 PLC D 1 321 3 PLC PLC . 
W 2 LMT E 1 501 501 LMT LMT . 
X 3 DSF E 1 319 1 DSF DSF . 
Y 4 PLC E 1 320 1 PLC PLC . 
Z 4 PLC E 1 321 3 PLC PLC . 
AA 5 HOH A 1 401 401 HOH HOH . 
AA 5 HOH A 2 402 402 HOH HOH . 
AA 5 HOH A 3 403 7 HOH HOH . 
AA 5 HOH A 4 404 404 HOH HOH . 
AA 5 HOH A 5 405 405 HOH HOH . 
AA 5 HOH A 6 406 406 HOH HOH . 
AA 5 HOH A 7 407 407 HOH HOH . 
AA 5 HOH A 8 415 415 HOH HOH . 
AA 5 HOH A 9 417 417 HOH HOH . 
AA 5 HOH A 10 419 419 HOH HOH . 
AA 5 HOH A 11 424 424 HOH HOH . 
AA 5 HOH A 12 425 425 HOH HOH . 
AA 5 HOH A 13 426 426 HOH HOH . 
AA 5 HOH A 14 430 430 HOH HOH . 
BA 5 HOH B 1 401 401 HOH HOH . 
BA 5 HOH B 2 402 402 HOH HOH . 
BA 5 HOH B 3 404 404 HOH HOH . 
BA 5 HOH B 4 405 405 HOH HOH . 
BA 5 HOH B 5 406 406 HOH HOH . 
BA 5 HOH B 6 407 407 HOH HOH . 
BA 5 HOH B 7 408 408 HOH HOH . 
BA 5 HOH B 8 409 5 HOH HOH . 
BA 5 HOH B 9 410 410 HOH HOH . 
BA 5 HOH B 10 411 411 HOH HOH . 
BA 5 HOH B 11 412 6 HOH HOH . 
BA 5 HOH B 12 415 415 HOH HOH . 
BA 5 HOH B 13 417 417 HOH HOH . 
BA 5 HOH B 14 418 418 HOH HOH . 
BA 5 HOH B 15 429 429 HOH HOH . 
BA 5 HOH B 16 430 430 HOH HOH . 
CA 5 HOH C 1 401 401 HOH HOH . 
CA 5 HOH C 2 402 402 HOH HOH . 
CA 5 HOH C 3 405 405 HOH HOH . 
CA 5 HOH C 4 406 406 HOH HOH . 
CA 5 HOH C 5 407 1 HOH HOH . 
CA 5 HOH C 6 408 2 HOH HOH . 
CA 5 HOH C 7 415 415 HOH HOH . 
DA 5 HOH D 1 401 401 HOH HOH . 
DA 5 HOH D 2 402 402 HOH HOH . 
DA 5 HOH D 3 404 404 HOH HOH . 
DA 5 HOH D 4 405 405 HOH HOH . 
DA 5 HOH D 5 406 406 HOH HOH . 
DA 5 HOH D 6 407 404 HOH HOH . 
DA 5 HOH D 7 408 9 HOH HOH . 
EA 5 HOH E 1 402 402 HOH HOH . 
EA 5 HOH E 2 406 406 HOH HOH . 
EA 5 HOH E 3 407 407 HOH HOH . 
EA 5 HOH E 4 408 3 HOH HOH . 
EA 5 HOH E 5 409 4 HOH HOH . 
EA 5 HOH E 6 410 8 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1' PLC . . . V 4 83.414 -39.308 24.376 1 61.41 ? C1' PLC 321 D 1 
HETATM 2 C C2' PLC . . . V 4 83.532 -38.046 25.275 1 60.32 ? C2' PLC 321 D 1 
HETATM 3 C C3' PLC . . . V 4 83.175 -38.385 26.754 1 59.84 ? C3' PLC 321 D 1 
HETATM 4 C C4' PLC . . . V 4 82.972 -37.056 27.604 1 59.51 ? C4' PLC 321 D 1 
HETATM 5 C C5' PLC . . . V 4 82.722 -37.349 29.105 1 59.28 ? C5' PLC 321 D 1 
HETATM 6 C C6' PLC . . . V 4 82.731 -36.045 29.844 1 58.77 ? C6' PLC 321 D 1 
HETATM 7 C C7' PLC . . . V 4 82.292 -36.297 31.305 1 58.44 ? C7' PLC 321 D 1 
HETATM 8 C C8' PLC . . . V 4 83.081 -35.383 32.279 1 58.8 ? C8' PLC 321 D 1 
HETATM 9 C C9' PLC . . . V 4 82.547 -35.456 33.697 1 58.75 ? C9' PLC 321 D 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           9 
#