data_3P50 # _model_server_result.job_id YvNzn6qEPaMmp0N8eLv83A _model_server_result.datetime_utc '2024-11-15 07:38:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p50 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":321}' # _entry.id 3P50 # _exptl.entry_id 3P50 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 622.834 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIUNDECYL PHOSPHATIDYL CHOLINE' _entity.pdbx_number_of_molecules 10 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.32 _cell.angle_gamma 90 _cell.entry_id 3P50 _cell.length_a 181.13 _cell.length_b 132.78 _cell.length_c 159.97 _cell.Z_PDB 20 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P50 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 I N N ? 4 J N N ? 4 M N N ? 4 N N N ? 4 P N N ? 4 Q N N ? 4 U N N ? 4 V N N ? 4 Y N N ? 4 Z N N # _chem_comp.formula 'C32 H65 N O8 P 1' _chem_comp.formula_weight 622.834 _chem_comp.id PLC _chem_comp.mon_nstd_flag . _chem_comp.name 'DIUNDECYL PHOSPHATIDYL CHOLINE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PLC sing 373 n n C1 O3P PLC sing 374 n n C1 H11 PLC sing 375 n n C1 H12 PLC sing 376 n n C2 C3 PLC sing 377 n n C2 O2 PLC sing 378 n n C2 H2 PLC sing 379 n n C3 O3 PLC sing 380 n n C3 H31 PLC sing 381 n n C3 H32 PLC sing 382 n n C4 C5 PLC sing 383 n n C4 O4P PLC sing 384 n n C4 H41 PLC sing 385 n n C4 H42 PLC sing 386 n n C5 N PLC sing 387 n n C5 H51 PLC sing 388 n n C5 H52 PLC sing 389 n n C6 N PLC sing 390 n n C6 H61 PLC sing 391 n n C6 H62 PLC sing 392 n n C6 H63 PLC sing 393 n n C7 N PLC sing 394 n n C7 H71 PLC sing 395 n n C7 H72 PLC sing 396 n n C7 H73 PLC sing 397 n n C8 N PLC sing 398 n n C8 H81 PLC sing 399 n n C8 H82 PLC sing 400 n n C8 H83 PLC sing 401 n n C' C1' PLC sing 402 n n C' O' PLC doub 403 n n C' O2 PLC sing 404 n n C1' C2' PLC sing 405 n n C1' "H1'1" PLC sing 406 n n C1' "H1'2" PLC sing 407 n n C2' C3' PLC sing 408 n n C2' "H2'1" PLC sing 409 n n C2' "H2'2" PLC sing 410 n n C3' C4' PLC sing 411 n n C3' "H3'1" PLC sing 412 n n C3' "H3'2" PLC sing 413 n n C4' C5' PLC sing 414 n n C4' "H4'1" PLC sing 415 n n C4' "H4'2" PLC sing 416 n n C5' C6' PLC sing 417 n n C5' "H5'1" PLC sing 418 n n C5' "H5'2" PLC sing 419 n n C6' C7' PLC sing 420 n n C6' "H6'1" PLC sing 421 n n C6' "H6'2" PLC sing 422 n n C7' C8' PLC sing 423 n n C7' "H7'1" PLC sing 424 n n C7' "H7'2" PLC sing 425 n n C8' C9' PLC sing 426 n n C8' "H8'1" PLC sing 427 n n C8' "H8'2" PLC sing 428 n n C9' CA' PLC sing 429 n n C9' "H9'1" PLC sing 430 n n C9' "H9'2" PLC sing 431 n n CA' CB' PLC sing 432 n n CA' "HT'1" PLC sing 433 n n CA' "HT'2" PLC sing 434 n n CB' "HE'1" PLC sing 435 n n CB' "HE'2" PLC sing 436 n n CB' "HE'3" PLC sing 437 n n CB C1B PLC sing 438 n n CB OB PLC doub 439 n n CB O3 PLC sing 440 n n C1B C2B PLC sing 441 n n C1B H1A1 PLC sing 442 n n C1B H1A2 PLC sing 443 n n C2B C3B PLC sing 444 n n C2B H2A1 PLC sing 445 n n C2B H2A2 PLC sing 446 n n C3B C4B PLC sing 447 n n C3B H3A1 PLC sing 448 n n C3B H3A2 PLC sing 449 n n C4B C5B PLC sing 450 n n C4B H4A1 PLC sing 451 n n C4B H4A2 PLC sing 452 n n C5B C6B PLC sing 453 n n C5B H5A1 PLC sing 454 n n C5B H5A2 PLC sing 455 n n C6B C7B PLC sing 456 n n C6B H6A1 PLC sing 457 n n C6B H6A2 PLC sing 458 n n C7B C8B PLC sing 459 n n C7B H7A1 PLC sing 460 n n C7B H7A2 PLC sing 461 n n C8B C9B PLC sing 462 n n C8B H8A1 PLC sing 463 n n C8B H8A2 PLC sing 464 n n C9B CAA PLC sing 465 n n C9B H9A1 PLC sing 466 n n C9B H9A2 PLC sing 467 n n CAA CBA PLC sing 468 n n CAA HTA1 PLC sing 469 n n CAA HTA2 PLC sing 470 n n CBA HEA1 PLC sing 471 n n CBA HEA2 PLC sing 472 n n CBA HEA3 PLC sing 473 n n O1P P PLC doub 474 n n O2P P PLC sing 475 n n O2P HOP2 PLC sing 476 n n O3P P PLC sing 477 n n O4P P PLC sing 478 n n # _atom_sites.entry_id 3P50 _atom_sites.fract_transf_matrix[1][1] 0.005521 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001206 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007531 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006399 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 LMT A 1 501 501 LMT LMT . G 2 LMT A 1 502 502 LMT LMT . H 3 PFL A 1 319 1 PFL PFL . I 4 PLC A 1 320 1 PLC PLC . J 4 PLC A 1 321 2 PLC PLC . K 2 LMT B 1 501 501 LMT LMT . L 3 PFL B 1 319 1 PFL PFL . M 4 PLC B 1 320 1 PLC PLC . N 4 PLC B 1 321 2 PLC PLC . O 3 PFL C 1 319 1 PFL PFL . P 4 PLC C 1 320 1 PLC PLC . Q 4 PLC C 1 321 2 PLC PLC . R 2 LMT D 1 501 501 LMT LMT . S 2 LMT D 1 319 501 LMT LMT . T 3 PFL D 1 320 1 PFL PFL . U 4 PLC D 1 321 1 PLC PLC . V 4 PLC D 1 322 2 PLC PLC . W 2 LMT E 1 501 501 LMT LMT . X 3 PFL E 1 319 1 PFL PFL . Y 4 PLC E 1 320 1 PLC PLC . Z 4 PLC E 1 321 2 PLC PLC . AA 5 HOH A 1 322 10 HOH HOH . AA 5 HOH A 2 323 15 HOH HOH . AA 5 HOH A 3 324 16 HOH HOH . AA 5 HOH A 4 325 17 HOH HOH . BA 5 HOH B 1 322 11 HOH HOH . BA 5 HOH B 2 323 12 HOH HOH . BA 5 HOH B 3 324 13 HOH HOH . BA 5 HOH B 4 325 14 HOH HOH . BA 5 HOH B 5 326 23 HOH HOH . CA 5 HOH C 1 322 4 HOH HOH . CA 5 HOH C 2 323 8 HOH HOH . CA 5 HOH C 3 324 9 HOH HOH . DA 5 HOH D 1 323 1 HOH HOH . DA 5 HOH D 2 324 2 HOH HOH . DA 5 HOH D 3 325 3 HOH HOH . DA 5 HOH D 4 326 21 HOH HOH . EA 5 HOH E 1 322 5 HOH HOH . EA 5 HOH E 2 323 6 HOH HOH . EA 5 HOH E 3 324 7 HOH HOH . EA 5 HOH E 4 325 18 HOH HOH . EA 5 HOH E 5 326 19 HOH HOH . EA 5 HOH E 6 327 20 HOH HOH . EA 5 HOH E 7 328 22 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' PLC . . . J 4 37.186 2.284 49.195 1 75.87 ? C1' PLC 321 A 1 HETATM 2 C C2' PLC . . . J 4 37.225 0.98 50.015 1 74.78 ? C2' PLC 321 A 1 HETATM 3 C C3' PLC . . . J 4 38.483 0.882 50.946 1 74.3 ? C3' PLC 321 A 1 HETATM 4 C C4' PLC . . . J 4 38.401 -0.299 51.971 1 73.99 ? C4' PLC 321 A 1 HETATM 5 C C5' PLC . . . J 4 39.797 -0.747 52.412 1 73.8 ? C5' PLC 321 A 1 HETATM 6 C C6' PLC . . . J 4 39.681 -1.943 53.356 1 73.3 ? C6' PLC 321 A 1 HETATM 7 C C7' PLC . . . J 4 40.958 -2.05 54.24 1 73 ? C7' PLC 321 A 1 HETATM 8 C C8' PLC . . . J 4 40.8 -3.079 55.418 1 73.39 ? C8' PLC 321 A 1 HETATM 9 C C9' PLC . . . J 4 41.789 -2.835 56.594 1 73.39 ? C9' PLC 321 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #