data_3P52 # _model_server_result.job_id u6zQQKUq6bIni0Kor2Me6Q _model_server_result.datetime_utc '2024-11-13 23:31:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p52 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":247}' # _entry.id 3P52 # _exptl.entry_id 3P52 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.005 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NITRATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3P52 _cell.length_a 120.945 _cell.length_b 120.945 _cell.length_c 91.795 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P52 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA hexameric 6 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -120.945 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -60.4725 -104.741442 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 3 A ALA 0 1_555 A N MSE 4 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale2 A C MSE 4 A MSE 1 1_555 A N ASP 5 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C LYS 12 A LYS 9 1_555 A N MSE 13 A MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 13 A MSE 10 1_555 A N CYS 14 A CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C LEU 58 A LEU 55 1_555 A N MSE 59 A MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale6 A C MSE 59 A MSE 56 1_555 A N PRO 60 A PRO 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C ARG 115 A ARG 112 1_555 A N MSE 116 A MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 A C MSE 116 A MSE 113 1_555 A N SER 117 A SER 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 A C ALA 228 A ALA 225 1_555 A N MSE 229 A MSE 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale10 A C MSE 229 A MSE 226 1_555 A N LEU 230 A LEU 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale11 A C ARG 233 A ARG 230 1_555 A N MSE 234 A MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale12 A C MSE 234 A MSE 231 1_555 A N GLN 235 A GLN 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 A C LYS 242 A LYS 239 1_555 A N MSE 243 A MSE 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale14 A C MSE 243 A MSE 240 1_555 A N PRO 244 A PRO 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale15 B C MSE 4 B MSE 1 1_555 B N ASP 5 B ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 B C LYS 12 B LYS 9 1_555 B N MSE 13 B MSE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale17 B C MSE 13 B MSE 10 1_555 B N CYS 14 B CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale18 B C LEU 58 B LEU 55 1_555 B N MSE 59 B MSE 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale19 B C MSE 59 B MSE 56 1_555 B N PRO 60 B PRO 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? covale ? covale20 B C ARG 115 B ARG 112 1_555 B N MSE 116 B MSE 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 B C MSE 116 B MSE 113 1_555 B N SER 117 B SER 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale22 B C ALA 228 B ALA 225 1_555 B N MSE 229 B MSE 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale23 B C MSE 229 B MSE 226 1_555 B N LEU 230 B LEU 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale24 B C ARG 233 B ARG 230 1_555 B N MSE 234 B MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale25 B C MSE 234 B MSE 231 1_555 B N GLN 235 B GLN 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale26 B C LYS 242 B LYS 239 1_555 B N MSE 243 B MSE 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale27 B C MSE 243 B MSE 240 1_555 B N PRO 244 B PRO 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'N O3 -1' _chem_comp.formula_weight 62.005 _chem_comp.id NO3 _chem_comp.mon_nstd_flag . _chem_comp.name 'NITRATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N O1 NO3 doub 237 n n N O2 NO3 sing 238 n n N O3 NO3 sing 239 n n # _atom_sites.entry_id 3P52 _atom_sites.fract_transf_matrix[1][1] 0.008268 _atom_sites.fract_transf_matrix[1][2] 0.004774 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009547 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NO3 A 1 247 1 NO3 NO3 . D 2 NO3 B 1 247 2 NO3 NO3 . E 2 NO3 B 1 248 3 NO3 NO3 . F 2 NO3 B 1 249 4 NO3 NO3 . G 3 HOH A 1 248 4 HOH HOH . G 3 HOH A 2 249 5 HOH HOH . G 3 HOH A 3 250 6 HOH HOH . G 3 HOH A 4 251 9 HOH HOH . G 3 HOH A 5 252 13 HOH HOH . G 3 HOH A 6 253 14 HOH HOH . G 3 HOH A 7 254 15 HOH HOH . G 3 HOH A 8 255 16 HOH HOH . G 3 HOH A 9 256 18 HOH HOH . G 3 HOH A 10 257 19 HOH HOH . G 3 HOH A 11 258 21 HOH HOH . G 3 HOH A 12 259 25 HOH HOH . G 3 HOH A 13 260 28 HOH HOH . G 3 HOH A 14 261 29 HOH HOH . G 3 HOH A 15 262 30 HOH HOH . G 3 HOH A 16 263 32 HOH HOH . G 3 HOH A 17 264 34 HOH HOH . G 3 HOH A 18 265 35 HOH HOH . G 3 HOH A 19 266 38 HOH HOH . G 3 HOH A 20 267 39 HOH HOH . G 3 HOH A 21 268 41 HOH HOH . G 3 HOH A 22 269 42 HOH HOH . G 3 HOH A 23 270 43 HOH HOH . G 3 HOH A 24 271 44 HOH HOH . G 3 HOH A 25 272 45 HOH HOH . G 3 HOH A 26 273 46 HOH HOH . G 3 HOH A 27 274 47 HOH HOH . G 3 HOH A 28 275 48 HOH HOH . G 3 HOH A 29 276 50 HOH HOH . G 3 HOH A 30 277 51 HOH HOH . G 3 HOH A 31 278 52 HOH HOH . G 3 HOH A 32 279 55 HOH HOH . G 3 HOH A 33 280 60 HOH HOH . G 3 HOH A 34 281 61 HOH HOH . G 3 HOH A 35 282 62 HOH HOH . G 3 HOH A 36 283 64 HOH HOH . G 3 HOH A 37 284 65 HOH HOH . H 3 HOH B 1 250 1 HOH HOH . H 3 HOH B 2 251 2 HOH HOH . H 3 HOH B 3 252 3 HOH HOH . H 3 HOH B 4 253 7 HOH HOH . H 3 HOH B 5 254 8 HOH HOH . H 3 HOH B 6 255 10 HOH HOH . H 3 HOH B 7 256 11 HOH HOH . H 3 HOH B 8 257 12 HOH HOH . H 3 HOH B 9 258 17 HOH HOH . H 3 HOH B 10 259 20 HOH HOH . H 3 HOH B 11 260 22 HOH HOH . H 3 HOH B 12 261 23 HOH HOH . H 3 HOH B 13 262 24 HOH HOH . H 3 HOH B 14 263 26 HOH HOH . H 3 HOH B 15 264 27 HOH HOH . H 3 HOH B 16 265 31 HOH HOH . H 3 HOH B 17 266 33 HOH HOH . H 3 HOH B 18 267 36 HOH HOH . H 3 HOH B 19 268 37 HOH HOH . H 3 HOH B 20 269 40 HOH HOH . H 3 HOH B 21 270 49 HOH HOH . H 3 HOH B 22 271 53 HOH HOH . H 3 HOH B 23 272 54 HOH HOH . H 3 HOH B 24 273 56 HOH HOH . H 3 HOH B 25 274 57 HOH HOH . H 3 HOH B 26 275 58 HOH HOH . H 3 HOH B 27 276 59 HOH HOH . H 3 HOH B 28 277 63 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N NO3 . . . D 2 -35.543 -29.096 -21.18 1 69.86 ? N NO3 247 B 1 HETATM 2 O O1 NO3 . . . D 2 -34.614 -29.887 -21.902 1 70.53 ? O1 NO3 247 B 1 HETATM 3 O O2 NO3 . . . D 2 -36.138 -27.958 -21.748 1 69.66 ? O2 NO3 247 B 1 HETATM 4 O O3 NO3 . . . D 2 -35.845 -29.406 -19.851 1 69.34 ? O3 NO3 247 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #