data_3P5B # _model_server_result.job_id 5AtZuHN_S2y1wGfe34EBLg _model_server_result.datetime_utc '2024-12-21 11:32:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 3P5B # _exptl.entry_id 3P5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P5B _cell.length_a 77 _cell.length_b 109.701 _cell.length_c 178.456 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 71 A CYS 223 1_555 B SG CYS 103 A CYS 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 B SG CYS 171 A CYS 323 1_555 B SG CYS 206 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 B SG CYS 223 A CYS 375 1_555 B SG CYS 226 A CYS 378 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 B SG CYS 305 A CYS 457 1_555 B SG CYS 375 A CYS 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 B SG CYS 325 A CYS 477 1_555 B SG CYS 374 A CYS 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 B SG CYS 334 A CYS 486 1_555 B SG CYS 357 A CYS 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 B SG CYS 382 A CYS 534 1_555 B SG CYS 449 A CYS 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 400 A CYS 552 1_555 B SG CYS 448 A CYS 600 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 410 A CYS 562 1_555 B SG CYS 436 A CYS 588 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf10 B SG CYS 456 A CYS 608 1_555 B SG CYS 527 A CYS 679 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf11 B SG CYS 474 A CYS 626 1_555 B SG CYS 526 A CYS 678 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf12 B SG CYS 483 A CYS 635 1_555 B SG CYS 502 A CYS 654 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf13 C SG CYS 3 L CYS 297 1_555 C SG CYS 14 L CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf14 C SG CYS 10 L CYS 304 1_555 C SG CYS 23 L CYS 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf15 C SG CYS 25 L CYS 319 1_555 C SG CYS 37 L CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? disulf ? disulf16 C SG CYS 49 L CYS 343 1_555 C SG CYS 62 L CYS 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf17 C SG CYS 352 L CYS 646 1_555 C SG CYS 366 L CYS 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 D CA CA . A CA 2 1_555 B O ALA 178 A ALA 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc2 D CA CA . A CA 2 1_555 B O VAL 181 A VAL 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.978 ? metalc ? metalc3 D CA CA . A CA 2 1_555 B OG1 THR 183 A THR 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.705 ? metalc ? metalc4 D CA CA . A CA 2 1_555 B O CYS 206 A CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.72 ? metalc ? metalc5 D CA CA . A CA 2 1_555 B OD2 ASP 208 A ASP 360 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.111 ? metalc ? metalc6 E CA CA . L CA 1 1_555 C OD2 ASP 39 L ASP 333 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc7 E CA CA . L CA 1 1_555 C O ILE 40 L ILE 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc8 E CA CA . L CA 1 1_555 C O LEU 56 L LEU 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc9 E CA CA . L CA 1 1_555 C O GLY 59 L GLY 353 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.053 ? metalc ? metalc10 F CA CA . L CA 3 1_555 C OD2 ASP 16 L ASP 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.984 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3P5B _atom_sites.fract_transf_matrix[1][1] 0.012987 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009116 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005604 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 CA A 1 2 2 CA CA . E 4 CA L 1 1 1 CA CA . F 4 CA L 1 3 3 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 40.957 _atom_site.Cartn_y -15.355 _atom_site.Cartn_z -40.245 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.75 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 2 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #