data_3P5Q # _model_server_result.job_id 4Y7phCpFHqexe8c0UYVwsw _model_server_result.datetime_utc '2024-12-02 11:55:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":143}' # _entry.id 3P5Q # _exptl.entry_id 3P5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.138 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TOLUENE _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P5Q _cell.length_a 53.546 _cell.length_b 53.546 _cell.length_c 192.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.183 ? metalc ? metalc2 C FE HEM . A HEM 142 1_555 H O HOH . A HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc3 B NE2 HIS 92 B HIS 92 1_555 G FE HEM . B HEM 147 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc4 G FE HEM . B HEM 147 1_555 I O HOH . B HOH 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? # _chem_comp.formula 'C7 H8' _chem_comp.formula_weight 92.138 _chem_comp.id MBN _chem_comp.mon_nstd_flag . _chem_comp.name TOLUENE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 MBN sing 279 n n C H1 MBN sing 280 n n C H2A MBN sing 281 n n C H3A MBN sing 282 n n C1 C2 MBN doub 283 n y C1 C6 MBN sing 284 n y C2 C3 MBN sing 285 n y C2 H2 MBN sing 286 n n C3 C4 MBN doub 287 n y C3 H3 MBN sing 288 n n C4 C5 MBN sing 289 n y C4 H4 MBN sing 290 n n C5 C6 MBN doub 291 n y C5 H5 MBN sing 292 n n C6 H6 MBN sing 293 n n # _atom_sites.entry_id 3P5Q _atom_sites.fract_transf_matrix[1][1] 0.018676 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018676 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005188 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 142 142 HEM HEM . D 4 MBN A 1 143 1 MBN MBN . E 4 MBN A 1 144 2 MBN MBN . F 4 MBN A 1 145 3 MBN MBN . G 3 HEM B 1 147 147 HEM HEM . H 5 HOH A 1 146 3 HOH HOH . H 5 HOH A 2 147 4 HOH HOH . H 5 HOH A 3 148 5 HOH HOH . H 5 HOH A 4 149 6 HOH HOH . H 5 HOH A 5 150 7 HOH HOH . H 5 HOH A 6 151 8 HOH HOH . H 5 HOH A 7 152 9 HOH HOH . H 5 HOH A 8 153 10 HOH HOH . H 5 HOH A 9 154 12 HOH HOH . H 5 HOH A 10 155 13 HOH HOH . H 5 HOH A 11 156 15 HOH HOH . H 5 HOH A 12 157 18 HOH HOH . H 5 HOH A 13 158 21 HOH HOH . H 5 HOH A 14 159 22 HOH HOH . H 5 HOH A 15 160 23 HOH HOH . H 5 HOH A 16 161 24 HOH HOH . H 5 HOH A 17 162 25 HOH HOH . H 5 HOH A 18 163 26 HOH HOH . H 5 HOH A 19 164 27 HOH HOH . H 5 HOH A 20 165 29 HOH HOH . H 5 HOH A 21 166 30 HOH HOH . H 5 HOH A 22 167 31 HOH HOH . H 5 HOH A 23 168 34 HOH HOH . H 5 HOH A 24 169 35 HOH HOH . H 5 HOH A 25 170 36 HOH HOH . H 5 HOH A 26 171 41 HOH HOH . H 5 HOH A 27 172 42 HOH HOH . H 5 HOH A 28 173 43 HOH HOH . H 5 HOH A 29 174 44 HOH HOH . H 5 HOH A 30 175 47 HOH HOH . H 5 HOH A 31 176 49 HOH HOH . H 5 HOH A 32 177 50 HOH HOH . H 5 HOH A 33 178 52 HOH HOH . H 5 HOH A 34 179 54 HOH HOH . H 5 HOH A 35 180 55 HOH HOH . H 5 HOH A 36 181 57 HOH HOH . H 5 HOH A 37 182 58 HOH HOH . H 5 HOH A 38 183 59 HOH HOH . H 5 HOH A 39 184 60 HOH HOH . H 5 HOH A 40 185 61 HOH HOH . H 5 HOH A 41 186 62 HOH HOH . H 5 HOH A 42 187 66 HOH HOH . H 5 HOH A 43 188 69 HOH HOH . H 5 HOH A 44 189 70 HOH HOH . H 5 HOH A 45 190 71 HOH HOH . H 5 HOH A 46 191 72 HOH HOH . H 5 HOH A 47 192 74 HOH HOH . H 5 HOH A 48 193 76 HOH HOH . H 5 HOH A 49 194 80 HOH HOH . H 5 HOH A 50 195 81 HOH HOH . H 5 HOH A 51 196 82 HOH HOH . H 5 HOH A 52 197 83 HOH HOH . H 5 HOH A 53 198 84 HOH HOH . H 5 HOH A 54 199 85 HOH HOH . H 5 HOH A 55 200 86 HOH HOH . H 5 HOH A 56 201 88 HOH HOH . H 5 HOH A 57 202 89 HOH HOH . H 5 HOH A 58 203 90 HOH HOH . H 5 HOH A 59 204 92 HOH HOH . H 5 HOH A 60 205 93 HOH HOH . H 5 HOH A 61 206 94 HOH HOH . H 5 HOH A 62 207 95 HOH HOH . H 5 HOH A 63 208 100 HOH HOH . H 5 HOH A 64 209 102 HOH HOH . I 5 HOH B 1 148 1 HOH HOH . I 5 HOH B 2 149 2 HOH HOH . I 5 HOH B 3 150 11 HOH HOH . I 5 HOH B 4 151 14 HOH HOH . I 5 HOH B 5 152 16 HOH HOH . I 5 HOH B 6 153 17 HOH HOH . I 5 HOH B 7 154 19 HOH HOH . I 5 HOH B 8 155 20 HOH HOH . I 5 HOH B 9 156 28 HOH HOH . I 5 HOH B 10 157 32 HOH HOH . I 5 HOH B 11 158 33 HOH HOH . I 5 HOH B 12 159 37 HOH HOH . I 5 HOH B 13 160 38 HOH HOH . I 5 HOH B 14 161 39 HOH HOH . I 5 HOH B 15 162 40 HOH HOH . I 5 HOH B 16 163 45 HOH HOH . I 5 HOH B 17 164 46 HOH HOH . I 5 HOH B 18 165 48 HOH HOH . I 5 HOH B 19 166 51 HOH HOH . I 5 HOH B 20 167 53 HOH HOH . I 5 HOH B 21 168 56 HOH HOH . I 5 HOH B 22 169 63 HOH HOH . I 5 HOH B 23 170 64 HOH HOH . I 5 HOH B 24 171 65 HOH HOH . I 5 HOH B 25 172 67 HOH HOH . I 5 HOH B 26 173 68 HOH HOH . I 5 HOH B 27 174 73 HOH HOH . I 5 HOH B 28 175 75 HOH HOH . I 5 HOH B 29 176 77 HOH HOH . I 5 HOH B 30 177 78 HOH HOH . I 5 HOH B 31 178 79 HOH HOH . I 5 HOH B 32 179 87 HOH HOH . I 5 HOH B 33 180 91 HOH HOH . I 5 HOH B 34 181 96 HOH HOH . I 5 HOH B 35 182 97 HOH HOH . I 5 HOH B 36 183 98 HOH HOH . I 5 HOH B 37 184 99 HOH HOH . I 5 HOH B 38 185 101 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C MBN . . . D 4 -4.09 -0.059 32.323 1 74.59 ? C MBN 143 A 1 HETATM 2 C C1 MBN . . . D 4 -2.742 0.405 32.816 1 78.41 ? C1 MBN 143 A 1 HETATM 3 C C2 MBN . . . D 4 -2.045 1.387 32.119 1 76.26 ? C2 MBN 143 A 1 HETATM 4 C C3 MBN . . . D 4 -0.8 1.814 32.568 1 75.23 ? C3 MBN 143 A 1 HETATM 5 C C4 MBN . . . D 4 -0.251 1.259 33.719 1 73.56 ? C4 MBN 143 A 1 HETATM 6 C C5 MBN . . . D 4 -0.946 0.276 34.418 1 76.21 ? C5 MBN 143 A 1 HETATM 7 C C6 MBN . . . D 4 -2.192 -0.15 33.969 1 76.18 ? C6 MBN 143 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 7 #