data_3P5X # _model_server_result.job_id k6rNx7r7crpNknmVQZI9Mg _model_server_result.datetime_utc '2024-11-10 01:22:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":222}' # _entry.id 3P5X # _exptl.entry_id 3P5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P5X _cell.length_a 48.519 _cell.length_b 56.039 _cell.length_c 70.916 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 A SG CYS 156 A CYS 156 1_555 A SG CYS 206 A CYS 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 A C SER 24 A SER 24 1_555 A N CSO 25 A CSO 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale2 A C CSO 25 A CSO 25 1_555 A N TRP 26 A TRP 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? metalc ? metalc1 A OD2 ASP 15 A ASP 15 1_555 F CD CD . A CD 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc2 A OD1 ASP 72 A ASP 72 1_555 G CD CD . A CD 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc3 A OD1 ASP 101 A ASP 101 1_555 D CD CD . A CD 223 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.459 ? metalc ? metalc4 A ND1 HIS 162 A HIS 162 1_555 C CD CD . A CD 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc5 A OD1 ASP 176 A ASP 176 1_555 B CD CD . A CD 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc6 A OD2 ASP 176 A ASP 176 1_555 B CD CD . A CD 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc7 A OE1 GLU 191 A GLU 191 1_555 E CD CD . A CD 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc8 A OE2 GLU 191 A GLU 191 1_555 E CD CD . A CD 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.54 ? metalc ? metalc9 B CD CD . A CD 221 1_555 I O HOH . A HOH 261 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.034 ? metalc ? metalc10 B CD CD . A CD 221 1_555 I O HOH . A HOH 261 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.229 ? metalc ? metalc11 B CD CD . A CD 221 1_555 I O HOH . A HOH 286 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc12 B CD CD . A CD 221 1_555 I O HOH . A HOH 287 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc13 C CD CD . A CD 222 1_555 I O HOH . A HOH 290 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc14 E CD CD . A CD 224 1_555 I O HOH . A HOH 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc15 G CD CD . A CD 226 1_555 I O HOH . A HOH 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc16 G CD CD . A CD 226 1_555 I O HOH . A HOH 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc17 H CD CD . A CD 227 1_555 I O HOH . A HOH 362 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc18 H CD CD . A CD 227 1_555 I O HOH . A HOH 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc19 H CD CD . A CD 227 1_555 I O HOH . A HOH 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3P5X _atom_sites.fract_transf_matrix[1][1] 0.02061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014101 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 221 2 CD CD . C 2 CD A 1 222 1 CD CD . D 2 CD A 1 223 4 CD CD . E 2 CD A 1 224 3 CD CD . F 2 CD A 1 225 7 CD CD . G 2 CD A 1 226 5 CD CD . H 2 CD A 1 227 6 CD CD . I 3 HOH A 1 228 1 HOH HOH . I 3 HOH A 2 229 2 HOH HOH . I 3 HOH A 3 230 3 HOH HOH . I 3 HOH A 4 231 4 HOH HOH . I 3 HOH A 5 232 5 HOH HOH . I 3 HOH A 6 233 6 HOH HOH . I 3 HOH A 7 234 7 HOH HOH . I 3 HOH A 8 235 8 HOH HOH . I 3 HOH A 9 236 9 HOH HOH . I 3 HOH A 10 237 10 HOH HOH . I 3 HOH A 11 238 11 HOH HOH . I 3 HOH A 12 239 12 HOH HOH . I 3 HOH A 13 240 13 HOH HOH . I 3 HOH A 14 241 14 HOH HOH . I 3 HOH A 15 242 15 HOH HOH . I 3 HOH A 16 243 16 HOH HOH . I 3 HOH A 17 244 17 HOH HOH . I 3 HOH A 18 245 18 HOH HOH . I 3 HOH A 19 246 19 HOH HOH . I 3 HOH A 20 247 20 HOH HOH . I 3 HOH A 21 248 21 HOH HOH . I 3 HOH A 22 249 22 HOH HOH . I 3 HOH A 23 250 23 HOH HOH . I 3 HOH A 24 251 24 HOH HOH . I 3 HOH A 25 252 25 HOH HOH . I 3 HOH A 26 253 26 HOH HOH . I 3 HOH A 27 254 27 HOH HOH . I 3 HOH A 28 255 28 HOH HOH . I 3 HOH A 29 256 29 HOH HOH . I 3 HOH A 30 257 30 HOH HOH . I 3 HOH A 31 258 31 HOH HOH . I 3 HOH A 32 259 32 HOH HOH . I 3 HOH A 33 260 33 HOH HOH . I 3 HOH A 34 261 34 HOH HOH . I 3 HOH A 35 262 35 HOH HOH . I 3 HOH A 36 263 36 HOH HOH . I 3 HOH A 37 264 37 HOH HOH . I 3 HOH A 38 265 38 HOH HOH . I 3 HOH A 39 266 39 HOH HOH . I 3 HOH A 40 267 40 HOH HOH . I 3 HOH A 41 268 41 HOH HOH . I 3 HOH A 42 269 42 HOH HOH . I 3 HOH A 43 270 43 HOH HOH . I 3 HOH A 44 271 44 HOH HOH . I 3 HOH A 45 272 45 HOH HOH . I 3 HOH A 46 273 46 HOH HOH . I 3 HOH A 47 274 47 HOH HOH . I 3 HOH A 48 275 48 HOH HOH . I 3 HOH A 49 276 49 HOH HOH . I 3 HOH A 50 277 50 HOH HOH . I 3 HOH A 51 278 51 HOH HOH . I 3 HOH A 52 279 52 HOH HOH . I 3 HOH A 53 280 53 HOH HOH . I 3 HOH A 54 281 54 HOH HOH . I 3 HOH A 55 282 55 HOH HOH . I 3 HOH A 56 283 56 HOH HOH . I 3 HOH A 57 284 57 HOH HOH . I 3 HOH A 58 285 58 HOH HOH . I 3 HOH A 59 286 59 HOH HOH . I 3 HOH A 60 287 60 HOH HOH . I 3 HOH A 61 288 61 HOH HOH . I 3 HOH A 62 289 62 HOH HOH . I 3 HOH A 63 290 63 HOH HOH . I 3 HOH A 64 291 64 HOH HOH . I 3 HOH A 65 292 65 HOH HOH . I 3 HOH A 66 293 66 HOH HOH . I 3 HOH A 67 294 67 HOH HOH . I 3 HOH A 68 295 68 HOH HOH . I 3 HOH A 69 296 69 HOH HOH . I 3 HOH A 70 297 70 HOH HOH . I 3 HOH A 71 298 71 HOH HOH . I 3 HOH A 72 299 72 HOH HOH . I 3 HOH A 73 300 73 HOH HOH . I 3 HOH A 74 301 74 HOH HOH . I 3 HOH A 75 302 75 HOH HOH . I 3 HOH A 76 303 76 HOH HOH . I 3 HOH A 77 304 77 HOH HOH . I 3 HOH A 78 305 78 HOH HOH . I 3 HOH A 79 306 79 HOH HOH . I 3 HOH A 80 307 80 HOH HOH . I 3 HOH A 81 308 81 HOH HOH . I 3 HOH A 82 309 82 HOH HOH . I 3 HOH A 83 310 83 HOH HOH . I 3 HOH A 84 311 84 HOH HOH . I 3 HOH A 85 312 85 HOH HOH . I 3 HOH A 86 313 86 HOH HOH . I 3 HOH A 87 314 87 HOH HOH . I 3 HOH A 88 315 88 HOH HOH . I 3 HOH A 89 316 89 HOH HOH . I 3 HOH A 90 317 90 HOH HOH . I 3 HOH A 91 318 91 HOH HOH . I 3 HOH A 92 319 92 HOH HOH . I 3 HOH A 93 320 93 HOH HOH . I 3 HOH A 94 321 94 HOH HOH . I 3 HOH A 95 322 95 HOH HOH . I 3 HOH A 96 323 96 HOH HOH . I 3 HOH A 97 324 97 HOH HOH . I 3 HOH A 98 325 98 HOH HOH . I 3 HOH A 99 326 99 HOH HOH . I 3 HOH A 100 327 100 HOH HOH . I 3 HOH A 101 328 101 HOH HOH . I 3 HOH A 102 329 102 HOH HOH . I 3 HOH A 103 330 103 HOH HOH . I 3 HOH A 104 331 104 HOH HOH . I 3 HOH A 105 332 105 HOH HOH . I 3 HOH A 106 333 106 HOH HOH . I 3 HOH A 107 334 107 HOH HOH . I 3 HOH A 108 335 108 HOH HOH . I 3 HOH A 109 336 109 HOH HOH . I 3 HOH A 110 337 110 HOH HOH . I 3 HOH A 111 338 111 HOH HOH . I 3 HOH A 112 339 112 HOH HOH . I 3 HOH A 113 340 113 HOH HOH . I 3 HOH A 114 341 114 HOH HOH . I 3 HOH A 115 342 115 HOH HOH . I 3 HOH A 116 343 116 HOH HOH . I 3 HOH A 117 344 117 HOH HOH . I 3 HOH A 118 345 118 HOH HOH . I 3 HOH A 119 346 119 HOH HOH . I 3 HOH A 120 347 120 HOH HOH . I 3 HOH A 121 348 121 HOH HOH . I 3 HOH A 122 349 122 HOH HOH . I 3 HOH A 123 350 123 HOH HOH . I 3 HOH A 124 351 124 HOH HOH . I 3 HOH A 125 352 125 HOH HOH . I 3 HOH A 126 353 126 HOH HOH . I 3 HOH A 127 354 127 HOH HOH . I 3 HOH A 128 355 128 HOH HOH . I 3 HOH A 129 356 129 HOH HOH . I 3 HOH A 130 357 130 HOH HOH . I 3 HOH A 131 358 131 HOH HOH . I 3 HOH A 132 359 132 HOH HOH . I 3 HOH A 133 360 133 HOH HOH . I 3 HOH A 134 361 134 HOH HOH . I 3 HOH A 135 362 135 HOH HOH . I 3 HOH A 136 363 136 HOH HOH . I 3 HOH A 137 364 137 HOH HOH . I 3 HOH A 138 365 138 HOH HOH . I 3 HOH A 139 366 139 HOH HOH . I 3 HOH A 140 367 140 HOH HOH . I 3 HOH A 141 368 141 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 13.621 _atom_site.Cartn_y 26.503 _atom_site.Cartn_z 56.456 _atom_site.occupancy 0.6 _atom_site.B_iso_or_equiv 15.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 222 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 220 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #