data_3P69 # _model_server_result.job_id e03GypLjOMURXTc8FA655w _model_server_result.datetime_utc '2024-10-19 20:00:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p69 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":163}' # _entry.id 3P69 # _exptl.entry_id 3P69 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3P69 _cell.length_a 127.074 _cell.length_b 127.074 _cell.length_c 150.606 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P69 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,K 1 1 B,I,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 116 A VAL 141 1_555 A N MSE 117 A MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale2 A C MSE 117 A MSE 142 1_555 A N ALA 118 A ALA 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale3 B C VAL 116 B VAL 141 1_555 B N MSE 117 B MSE 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 B C MSE 117 B MSE 142 1_555 B N ALA 118 B ALA 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 97 n n C1 C2 GOL sing 98 n n C1 H11 GOL sing 99 n n C1 H12 GOL sing 100 n n O1 HO1 GOL sing 101 n n C2 O2 GOL sing 102 n n C2 C3 GOL sing 103 n n C2 H2 GOL sing 104 n n O2 HO2 GOL sing 105 n n C3 O3 GOL sing 106 n n C3 H31 GOL sing 107 n n C3 H32 GOL sing 108 n n O3 HO3 GOL sing 109 n n # _atom_sites.entry_id 3P69 _atom_sites.fract_transf_matrix[1][1] 0.007869 _atom_sites.fract_transf_matrix[1][2] 0.004543 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009087 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00664 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 160 160 GOL GOL . D 2 GOL A 1 162 162 GOL GOL . E 2 GOL A 1 163 163 GOL GOL . F 2 GOL A 1 164 164 GOL GOL . G 2 GOL A 1 165 165 GOL GOL . H 3 CL A 1 168 168 CL CL . I 3 CL B 1 166 166 CL CL . J 3 CL B 1 167 167 CL CL . K 4 HOH A 1 178 178 HOH HOH . K 4 HOH A 2 179 179 HOH HOH . K 4 HOH A 3 181 181 HOH HOH . K 4 HOH A 4 185 185 HOH HOH . K 4 HOH A 5 187 187 HOH HOH . K 4 HOH A 6 188 188 HOH HOH . K 4 HOH A 7 189 189 HOH HOH . K 4 HOH A 8 193 193 HOH HOH . K 4 HOH A 9 196 196 HOH HOH . K 4 HOH A 10 200 200 HOH HOH . K 4 HOH A 11 201 201 HOH HOH . K 4 HOH A 12 205 205 HOH HOH . K 4 HOH A 13 206 206 HOH HOH . K 4 HOH A 14 211 211 HOH HOH . K 4 HOH A 15 212 212 HOH HOH . K 4 HOH A 16 215 215 HOH HOH . K 4 HOH A 17 216 216 HOH HOH . K 4 HOH A 18 218 218 HOH HOH . K 4 HOH A 19 219 219 HOH HOH . K 4 HOH A 20 223 223 HOH HOH . K 4 HOH A 21 229 229 HOH HOH . K 4 HOH A 22 232 232 HOH HOH . K 4 HOH A 23 241 241 HOH HOH . K 4 HOH A 24 242 242 HOH HOH . K 4 HOH A 25 243 243 HOH HOH . K 4 HOH A 26 244 244 HOH HOH . K 4 HOH A 27 245 245 HOH HOH . K 4 HOH A 28 246 246 HOH HOH . K 4 HOH A 29 247 247 HOH HOH . K 4 HOH A 30 248 248 HOH HOH . K 4 HOH A 31 257 257 HOH HOH . K 4 HOH A 32 260 260 HOH HOH . K 4 HOH A 33 261 261 HOH HOH . K 4 HOH A 34 264 264 HOH HOH . K 4 HOH A 35 266 266 HOH HOH . K 4 HOH A 36 267 267 HOH HOH . K 4 HOH A 37 268 268 HOH HOH . K 4 HOH A 38 270 270 HOH HOH . K 4 HOH A 39 271 271 HOH HOH . K 4 HOH A 40 272 272 HOH HOH . K 4 HOH A 41 274 274 HOH HOH . K 4 HOH A 42 275 275 HOH HOH . K 4 HOH A 43 276 276 HOH HOH . K 4 HOH A 44 277 277 HOH HOH . K 4 HOH A 45 279 279 HOH HOH . K 4 HOH A 46 280 280 HOH HOH . K 4 HOH A 47 281 281 HOH HOH . K 4 HOH A 48 293 293 HOH HOH . K 4 HOH A 49 298 298 HOH HOH . K 4 HOH A 50 301 301 HOH HOH . K 4 HOH A 51 302 302 HOH HOH . K 4 HOH A 52 303 303 HOH HOH . K 4 HOH A 53 304 304 HOH HOH . K 4 HOH A 54 307 307 HOH HOH . K 4 HOH A 55 313 313 HOH HOH . K 4 HOH A 56 320 320 HOH HOH . K 4 HOH A 57 321 321 HOH HOH . K 4 HOH A 58 322 322 HOH HOH . K 4 HOH A 59 328 328 HOH HOH . K 4 HOH A 60 329 329 HOH HOH . K 4 HOH A 61 330 330 HOH HOH . K 4 HOH A 62 331 331 HOH HOH . K 4 HOH A 63 332 332 HOH HOH . K 4 HOH A 64 335 335 HOH HOH . K 4 HOH A 65 336 336 HOH HOH . K 4 HOH A 66 337 337 HOH HOH . K 4 HOH A 67 338 338 HOH HOH . K 4 HOH A 68 339 339 HOH HOH . K 4 HOH A 69 340 340 HOH HOH . K 4 HOH A 70 341 341 HOH HOH . K 4 HOH A 71 343 343 HOH HOH . K 4 HOH A 72 344 344 HOH HOH . K 4 HOH A 73 345 345 HOH HOH . K 4 HOH A 74 346 346 HOH HOH . K 4 HOH A 75 348 348 HOH HOH . K 4 HOH A 76 349 349 HOH HOH . K 4 HOH A 77 352 352 HOH HOH . K 4 HOH A 78 361 361 HOH HOH . K 4 HOH A 79 362 362 HOH HOH . K 4 HOH A 80 363 363 HOH HOH . K 4 HOH A 81 364 364 HOH HOH . K 4 HOH A 82 367 367 HOH HOH . K 4 HOH A 83 368 368 HOH HOH . K 4 HOH A 84 371 371 HOH HOH . K 4 HOH A 85 372 372 HOH HOH . K 4 HOH A 86 377 377 HOH HOH . K 4 HOH A 87 378 378 HOH HOH . K 4 HOH A 88 379 379 HOH HOH . K 4 HOH A 89 383 383 HOH HOH . K 4 HOH A 90 384 384 HOH HOH . K 4 HOH A 91 390 390 HOH HOH . K 4 HOH A 92 399 399 HOH HOH . K 4 HOH A 93 406 406 HOH HOH . K 4 HOH A 94 407 407 HOH HOH . K 4 HOH A 95 408 408 HOH HOH . K 4 HOH A 96 411 411 HOH HOH . K 4 HOH A 97 412 412 HOH HOH . K 4 HOH A 98 413 413 HOH HOH . K 4 HOH A 99 419 419 HOH HOH . K 4 HOH A 100 420 420 HOH HOH . K 4 HOH A 101 426 426 HOH HOH . K 4 HOH A 102 427 427 HOH HOH . K 4 HOH A 103 428 428 HOH HOH . K 4 HOH A 104 429 429 HOH HOH . K 4 HOH A 105 432 432 HOH HOH . K 4 HOH A 106 433 433 HOH HOH . L 4 HOH B 1 169 169 HOH HOH . L 4 HOH B 2 170 170 HOH HOH . L 4 HOH B 3 171 171 HOH HOH . L 4 HOH B 4 172 172 HOH HOH . L 4 HOH B 5 173 173 HOH HOH . L 4 HOH B 6 174 174 HOH HOH . L 4 HOH B 7 175 175 HOH HOH . L 4 HOH B 8 176 176 HOH HOH . L 4 HOH B 9 177 177 HOH HOH . L 4 HOH B 10 180 180 HOH HOH . L 4 HOH B 11 182 182 HOH HOH . L 4 HOH B 12 183 183 HOH HOH . L 4 HOH B 13 184 184 HOH HOH . L 4 HOH B 14 186 186 HOH HOH . L 4 HOH B 15 190 190 HOH HOH . L 4 HOH B 16 191 191 HOH HOH . L 4 HOH B 17 192 192 HOH HOH . L 4 HOH B 18 194 194 HOH HOH . L 4 HOH B 19 195 195 HOH HOH . L 4 HOH B 20 197 197 HOH HOH . L 4 HOH B 21 198 198 HOH HOH . L 4 HOH B 22 199 199 HOH HOH . L 4 HOH B 23 202 202 HOH HOH . L 4 HOH B 24 203 203 HOH HOH . L 4 HOH B 25 204 204 HOH HOH . L 4 HOH B 26 207 207 HOH HOH . L 4 HOH B 27 208 208 HOH HOH . L 4 HOH B 28 209 209 HOH HOH . L 4 HOH B 29 210 210 HOH HOH . L 4 HOH B 30 213 213 HOH HOH . L 4 HOH B 31 214 214 HOH HOH . L 4 HOH B 32 217 217 HOH HOH . L 4 HOH B 33 220 220 HOH HOH . L 4 HOH B 34 221 221 HOH HOH . L 4 HOH B 35 222 222 HOH HOH . L 4 HOH B 36 224 224 HOH HOH . L 4 HOH B 37 225 225 HOH HOH . L 4 HOH B 38 226 226 HOH HOH . L 4 HOH B 39 227 227 HOH HOH . L 4 HOH B 40 228 228 HOH HOH . L 4 HOH B 41 230 230 HOH HOH . L 4 HOH B 42 231 231 HOH HOH . L 4 HOH B 43 233 233 HOH HOH . L 4 HOH B 44 234 234 HOH HOH . L 4 HOH B 45 235 235 HOH HOH . L 4 HOH B 46 236 236 HOH HOH . L 4 HOH B 47 237 237 HOH HOH . L 4 HOH B 48 238 238 HOH HOH . L 4 HOH B 49 239 239 HOH HOH . L 4 HOH B 50 240 240 HOH HOH . L 4 HOH B 51 249 249 HOH HOH . L 4 HOH B 52 250 250 HOH HOH . L 4 HOH B 53 251 251 HOH HOH . L 4 HOH B 54 252 252 HOH HOH . L 4 HOH B 55 253 253 HOH HOH . L 4 HOH B 56 254 254 HOH HOH . L 4 HOH B 57 255 255 HOH HOH . L 4 HOH B 58 256 256 HOH HOH . L 4 HOH B 59 258 258 HOH HOH . L 4 HOH B 60 259 259 HOH HOH . L 4 HOH B 61 262 262 HOH HOH . L 4 HOH B 62 263 263 HOH HOH . L 4 HOH B 63 265 265 HOH HOH . L 4 HOH B 64 269 269 HOH HOH . L 4 HOH B 65 273 273 HOH HOH . L 4 HOH B 66 278 278 HOH HOH . L 4 HOH B 67 282 282 HOH HOH . L 4 HOH B 68 283 283 HOH HOH . L 4 HOH B 69 284 284 HOH HOH . L 4 HOH B 70 285 285 HOH HOH . L 4 HOH B 71 286 286 HOH HOH . L 4 HOH B 72 287 287 HOH HOH . L 4 HOH B 73 288 288 HOH HOH . L 4 HOH B 74 289 289 HOH HOH . L 4 HOH B 75 290 290 HOH HOH . L 4 HOH B 76 291 291 HOH HOH . L 4 HOH B 77 292 292 HOH HOH . L 4 HOH B 78 294 294 HOH HOH . L 4 HOH B 79 295 295 HOH HOH . L 4 HOH B 80 296 296 HOH HOH . L 4 HOH B 81 297 297 HOH HOH . L 4 HOH B 82 299 299 HOH HOH . L 4 HOH B 83 300 300 HOH HOH . L 4 HOH B 84 305 305 HOH HOH . L 4 HOH B 85 306 306 HOH HOH . L 4 HOH B 86 308 308 HOH HOH . L 4 HOH B 87 309 309 HOH HOH . L 4 HOH B 88 310 310 HOH HOH . L 4 HOH B 89 311 311 HOH HOH . L 4 HOH B 90 312 312 HOH HOH . L 4 HOH B 91 314 314 HOH HOH . L 4 HOH B 92 315 315 HOH HOH . L 4 HOH B 93 316 316 HOH HOH . L 4 HOH B 94 317 317 HOH HOH . L 4 HOH B 95 318 318 HOH HOH . L 4 HOH B 96 319 319 HOH HOH . L 4 HOH B 97 323 323 HOH HOH . L 4 HOH B 98 324 324 HOH HOH . L 4 HOH B 99 325 325 HOH HOH . L 4 HOH B 100 326 326 HOH HOH . L 4 HOH B 101 327 327 HOH HOH . L 4 HOH B 102 333 333 HOH HOH . L 4 HOH B 103 334 334 HOH HOH . L 4 HOH B 104 342 342 HOH HOH . L 4 HOH B 105 347 347 HOH HOH . L 4 HOH B 106 350 350 HOH HOH . L 4 HOH B 107 351 351 HOH HOH . L 4 HOH B 108 353 353 HOH HOH . L 4 HOH B 109 354 354 HOH HOH . L 4 HOH B 110 355 355 HOH HOH . L 4 HOH B 111 356 356 HOH HOH . L 4 HOH B 112 357 357 HOH HOH . L 4 HOH B 113 358 358 HOH HOH . L 4 HOH B 114 359 359 HOH HOH . L 4 HOH B 115 360 360 HOH HOH . L 4 HOH B 116 365 365 HOH HOH . L 4 HOH B 117 366 366 HOH HOH . L 4 HOH B 118 369 369 HOH HOH . L 4 HOH B 119 370 370 HOH HOH . L 4 HOH B 120 373 373 HOH HOH . L 4 HOH B 121 374 374 HOH HOH . L 4 HOH B 122 375 375 HOH HOH . L 4 HOH B 123 376 376 HOH HOH . L 4 HOH B 124 380 380 HOH HOH . L 4 HOH B 125 381 381 HOH HOH . L 4 HOH B 126 382 382 HOH HOH . L 4 HOH B 127 385 385 HOH HOH . L 4 HOH B 128 386 386 HOH HOH . L 4 HOH B 129 387 387 HOH HOH . L 4 HOH B 130 388 388 HOH HOH . L 4 HOH B 131 389 389 HOH HOH . L 4 HOH B 132 391 391 HOH HOH . L 4 HOH B 133 392 392 HOH HOH . L 4 HOH B 134 393 393 HOH HOH . L 4 HOH B 135 394 394 HOH HOH . L 4 HOH B 136 395 395 HOH HOH . L 4 HOH B 137 396 396 HOH HOH . L 4 HOH B 138 397 397 HOH HOH . L 4 HOH B 139 398 398 HOH HOH . L 4 HOH B 140 400 400 HOH HOH . L 4 HOH B 141 401 401 HOH HOH . L 4 HOH B 142 402 402 HOH HOH . L 4 HOH B 143 403 403 HOH HOH . L 4 HOH B 144 404 404 HOH HOH . L 4 HOH B 145 405 405 HOH HOH . L 4 HOH B 146 409 409 HOH HOH . L 4 HOH B 147 410 410 HOH HOH . L 4 HOH B 148 414 414 HOH HOH . L 4 HOH B 149 415 415 HOH HOH . L 4 HOH B 150 416 416 HOH HOH . L 4 HOH B 151 417 417 HOH HOH . L 4 HOH B 152 418 418 HOH HOH . L 4 HOH B 153 421 421 HOH HOH . L 4 HOH B 154 422 422 HOH HOH . L 4 HOH B 155 423 423 HOH HOH . L 4 HOH B 156 424 424 HOH HOH . L 4 HOH B 157 425 425 HOH HOH . L 4 HOH B 158 430 430 HOH HOH . L 4 HOH B 159 431 431 HOH HOH . L 4 HOH B 160 434 434 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 2 5.398 57.92 -5.008 1 76.14 ? C1 GOL 163 A 1 HETATM 2 O O1 GOL . . . E 2 4.379 57.432 -5.838 1 73.6 ? O1 GOL 163 A 1 HETATM 3 C C2 GOL . . . E 2 6.43 56.824 -4.739 1 76.47 ? C2 GOL 163 A 1 HETATM 4 O O2 GOL . . . E 2 6.668 55.972 -5.863 1 78.2 ? O2 GOL 163 A 1 HETATM 5 C C3 GOL . . . E 2 6.185 56.012 -3.453 1 76.71 ? C3 GOL 163 A 1 HETATM 6 O O3 GOL . . . E 2 4.81 55.595 -3.346 1 76.53 ? O3 GOL 163 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 6 #