data_3P6R
#
_model_server_result.job_id            rnA9AfrX7E68KfDDs2hISQ 
_model_server_result.datetime_utc      '2024-11-22 21:58:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p6r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":420}' 
#
_entry.id    3P6R 
#
_exptl.entry_id    3P6R 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P6R 
_cell.length_a            66.809 
_cell.length_b            75.008 
_cell.length_c            91.781 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P6R 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_struct_conn.conn_type_id                   metalc 
_struct_conn.details                        ? 
_struct_conn.id                             metalc1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             357 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              357 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            B 
_struct_conn.ptnr2_label_atom_id            FE 
_struct_conn.ptnr2_label_comp_id            HEM 
_struct_conn.ptnr2_label_seq_id             . 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             HEM 
_struct_conn.ptnr2_auth_seq_id              420 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        ? 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.207 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     3P6R 
_atom_sites.fract_transf_matrix[1][1]    0.014968 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013332 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010896 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 HEM A 1 420 420 HEM HEM . 
C 3 CL A 1 435 435 CL CL . 
D 4 HOH A 1 500 500 HOH HOH . 
D 4 HOH A 2 501 501 HOH HOH . 
D 4 HOH A 3 502 502 HOH HOH . 
D 4 HOH A 4 503 503 HOH HOH . 
D 4 HOH A 5 504 504 HOH HOH . 
D 4 HOH A 6 505 505 HOH HOH . 
D 4 HOH A 7 506 506 HOH HOH . 
D 4 HOH A 8 507 507 HOH HOH . 
D 4 HOH A 9 508 508 HOH HOH . 
D 4 HOH A 10 509 509 HOH HOH . 
D 4 HOH A 11 510 510 HOH HOH . 
D 4 HOH A 12 511 511 HOH HOH . 
D 4 HOH A 13 512 512 HOH HOH . 
D 4 HOH A 14 513 513 HOH HOH . 
D 4 HOH A 15 514 514 HOH HOH . 
D 4 HOH A 16 515 515 HOH HOH . 
D 4 HOH A 17 516 516 HOH HOH . 
D 4 HOH A 18 517 517 HOH HOH . 
D 4 HOH A 19 518 518 HOH HOH . 
D 4 HOH A 20 519 519 HOH HOH . 
D 4 HOH A 21 520 520 HOH HOH . 
D 4 HOH A 22 521 521 HOH HOH . 
D 4 HOH A 23 522 522 HOH HOH . 
D 4 HOH A 24 523 523 HOH HOH . 
D 4 HOH A 25 524 524 HOH HOH . 
D 4 HOH A 26 525 525 HOH HOH . 
D 4 HOH A 27 526 526 HOH HOH . 
D 4 HOH A 28 527 527 HOH HOH . 
D 4 HOH A 29 528 528 HOH HOH . 
D 4 HOH A 30 529 529 HOH HOH . 
D 4 HOH A 31 530 530 HOH HOH . 
D 4 HOH A 32 531 531 HOH HOH . 
D 4 HOH A 33 532 532 HOH HOH . 
D 4 HOH A 34 533 533 HOH HOH . 
D 4 HOH A 35 534 534 HOH HOH . 
D 4 HOH A 36 535 535 HOH HOH . 
D 4 HOH A 37 536 536 HOH HOH . 
D 4 HOH A 38 537 537 HOH HOH . 
D 4 HOH A 39 538 538 HOH HOH . 
D 4 HOH A 40 539 539 HOH HOH . 
D 4 HOH A 41 540 540 HOH HOH . 
D 4 HOH A 42 541 541 HOH HOH . 
D 4 HOH A 43 542 542 HOH HOH . 
D 4 HOH A 44 543 543 HOH HOH . 
D 4 HOH A 45 544 544 HOH HOH . 
D 4 HOH A 46 545 545 HOH HOH . 
D 4 HOH A 47 546 546 HOH HOH . 
D 4 HOH A 48 547 547 HOH HOH . 
D 4 HOH A 49 548 548 HOH HOH . 
D 4 HOH A 50 549 549 HOH HOH . 
D 4 HOH A 51 550 550 HOH HOH . 
D 4 HOH A 52 551 551 HOH HOH . 
D 4 HOH A 53 552 552 HOH HOH . 
D 4 HOH A 54 553 553 HOH HOH . 
D 4 HOH A 55 554 554 HOH HOH . 
D 4 HOH A 56 555 555 HOH HOH . 
D 4 HOH A 57 556 556 HOH HOH . 
D 4 HOH A 58 557 557 HOH HOH . 
D 4 HOH A 59 558 558 HOH HOH . 
D 4 HOH A 60 559 559 HOH HOH . 
D 4 HOH A 61 560 560 HOH HOH . 
D 4 HOH A 62 561 561 HOH HOH . 
D 4 HOH A 63 562 562 HOH HOH . 
D 4 HOH A 64 563 563 HOH HOH . 
D 4 HOH A 65 564 564 HOH HOH . 
D 4 HOH A 66 565 565 HOH HOH . 
D 4 HOH A 67 566 566 HOH HOH . 
D 4 HOH A 68 567 567 HOH HOH . 
D 4 HOH A 69 568 568 HOH HOH . 
D 4 HOH A 70 569 569 HOH HOH . 
D 4 HOH A 71 570 570 HOH HOH . 
D 4 HOH A 72 571 571 HOH HOH . 
D 4 HOH A 73 572 572 HOH HOH . 
D 4 HOH A 74 573 573 HOH HOH . 
D 4 HOH A 75 574 574 HOH HOH . 
D 4 HOH A 76 575 575 HOH HOH . 
D 4 HOH A 77 576 576 HOH HOH . 
D 4 HOH A 78 577 577 HOH HOH . 
D 4 HOH A 79 578 578 HOH HOH . 
D 4 HOH A 80 579 579 HOH HOH . 
D 4 HOH A 81 580 580 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . B 2 0.147 -20.532 -21.404 1 26.83 ? CHA HEM 420 A 1 
HETATM 2 C CHB HEM . . . B 2 2.463 -22.247 -17.513 1 25.94 ? CHB HEM 420 A 1 
HETATM 3 C CHC HEM . . . B 2 -1.869 -23.544 -15.69 1 24.89 ? CHC HEM 420 A 1 
HETATM 4 C CHD HEM . . . B 2 -4.133 -22.266 -19.752 1 27.29 ? CHD HEM 420 A 1 
HETATM 5 C C1A HEM . . . B 2 1.157 -20.854 -20.524 1 26.1 ? C1A HEM 420 A 1 
HETATM 6 C C2A HEM . . . B 2 2.563 -20.515 -20.677 1 27.92 ? C2A HEM 420 A 1 
HETATM 7 C C3A HEM . . . B 2 3.218 -20.985 -19.6 1 26.86 ? C3A HEM 420 A 1 
HETATM 8 C C4A HEM . . . B 2 2.231 -21.631 -18.729 1 26.24 ? C4A HEM 420 A 1 
HETATM 9 C CMA HEM . . . B 2 4.742 -20.886 -19.325 1 23.29 ? CMA HEM 420 A 1 
HETATM 10 C CAA HEM . . . B 2 3.171 -19.738 -21.886 1 27.99 ? CAA HEM 420 A 1 
HETATM 11 C CBA HEM . . . B 2 3.924 -20.68 -22.82 1 30.2 ? CBA HEM 420 A 1 
HETATM 12 C CGA HEM . . . B 2 4.655 -19.969 -23.947 1 31.81 ? CGA HEM 420 A 1 
HETATM 13 O O1A HEM . . . B 2 5.018 -20.665 -24.928 1 34.89 ? O1A HEM 420 A 1 
HETATM 14 O O2A HEM . . . B 2 4.906 -18.742 -23.908 1 31.73 ? O2A HEM 420 A 1 
HETATM 15 C C1B HEM . . . B 2 1.478 -22.752 -16.672 1 24.62 ? C1B HEM 420 A 1 
HETATM 16 C C2B HEM . . . B 2 1.685 -23.364 -15.372 1 22.3 ? C2B HEM 420 A 1 
HETATM 17 C C3B HEM . . . B 2 0.483 -23.713 -14.877 1 23.14 ? C3B HEM 420 A 1 
HETATM 18 C C4B HEM . . . B 2 -0.515 -23.339 -15.854 1 24.56 ? C4B HEM 420 A 1 
HETATM 19 C CMB HEM . . . B 2 3.058 -23.524 -14.689 1 20.7 ? CMB HEM 420 A 1 
HETATM 20 C CAB HEM . . . B 2 0.123 -24.406 -13.537 1 22.55 ? CAB HEM 420 A 1 
HETATM 21 C CBB HEM . . . B 2 1.007 -24.56 -12.541 1 25.4 ? CBB HEM 420 A 1 
HETATM 22 C C1C HEM . . . B 2 -2.864 -23.314 -16.596 1 26.42 ? C1C HEM 420 A 1 
HETATM 23 C C2C HEM . . . B 2 -4.276 -23.578 -16.402 1 27.95 ? C2C HEM 420 A 1 
HETATM 24 C C3C HEM . . . B 2 -4.909 -23.249 -17.534 1 27.95 ? C3C HEM 420 A 1 
HETATM 25 C C4C HEM . . . B 2 -3.915 -22.746 -18.476 1 28.42 ? C4C HEM 420 A 1 
HETATM 26 C CMC HEM . . . B 2 -4.926 -24.147 -15.111 1 26.57 ? CMC HEM 420 A 1 
HETATM 27 C CAC HEM . . . B 2 -6.442 -23.361 -17.748 1 31.63 ? CAC HEM 420 A 1 
HETATM 28 C CBC HEM . . . B 2 -6.949 -24.14 -18.708 1 31.17 ? CBC HEM 420 A 1 
HETATM 29 C C1D HEM . . . B 2 -3.218 -21.667 -20.587 1 28.11 ? C1D HEM 420 A 1 
HETATM 30 C C2D HEM . . . B 2 -3.502 -21.149 -21.911 1 30.02 ? C2D HEM 420 A 1 
HETATM 31 C C3D HEM . . . B 2 -2.163 -20.605 -22.422 1 30.04 ? C3D HEM 420 A 1 
HETATM 32 C C4D HEM . . . B 2 -1.199 -20.859 -21.365 1 28.08 ? C4D HEM 420 A 1 
HETATM 33 C CMD HEM . . . B 2 -4.872 -21.153 -22.64 1 30.98 ? CMD HEM 420 A 1 
HETATM 34 C CAD HEM . . . B 2 -1.877 -19.944 -23.793 1 30.74 ? CAD HEM 420 A 1 
HETATM 35 C CBD HEM . . . B 2 -1.774 -18.416 -23.686 1 29.2 ? CBD HEM 420 A 1 
HETATM 36 C CGD HEM . . . B 2 -1.543 -17.833 -25.073 1 30.71 ? CGD HEM 420 A 1 
HETATM 37 O O1D HEM . . . B 2 -1.871 -16.65 -25.308 1 30.12 ? O1D HEM 420 A 1 
HETATM 38 O O2D HEM . . . B 2 -1.006 -18.536 -25.968 1 29.95 ? O2D HEM 420 A 1 
HETATM 39 N NA HEM . . . B 2 1 -21.512 -19.322 1 25.96 ? NA HEM 420 A 1 
HETATM 40 N NB HEM . . . B 2 0.123 -22.759 -16.925 1 24.13 ? NB HEM 420 A 1 
HETATM 41 N NC HEM . . . B 2 -2.682 -22.782 -17.849 1 26.73 ? NC HEM 420 A 1 
HETATM 42 N ND HEM . . . B 2 -1.868 -21.469 -20.32 1 27.92 ? ND HEM 420 A 1 
HETATM 43 FE FE HEM . . . B 2 -0.857 -22.097 -18.565 1 26.86 ? FE HEM 420 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#