data_3P6S # _model_server_result.job_id s67TfeRt_JniK8pQnGOvIg _model_server_result.datetime_utc '2024-10-12 10:17:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p6s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":420}' # _entry.id 3P6S # _exptl.entry_id 3P6S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P6S _cell.length_a 65.594 _cell.length_b 73.863 _cell.length_c 91.153 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P6S _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 357 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 357 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 420 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.235 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 3P6S _atom_sites.fract_transf_matrix[1][1] 0.015245 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013539 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 420 420 HEM HEM . C 3 HOH A 1 500 500 HOH HOH . C 3 HOH A 2 501 501 HOH HOH . C 3 HOH A 3 502 502 HOH HOH . C 3 HOH A 4 503 503 HOH HOH . C 3 HOH A 5 504 504 HOH HOH . C 3 HOH A 6 505 505 HOH HOH . C 3 HOH A 7 506 506 HOH HOH . C 3 HOH A 8 507 507 HOH HOH . C 3 HOH A 9 508 508 HOH HOH . C 3 HOH A 10 509 509 HOH HOH . C 3 HOH A 11 510 510 HOH HOH . C 3 HOH A 12 511 511 HOH HOH . C 3 HOH A 13 512 512 HOH HOH . C 3 HOH A 14 513 513 HOH HOH . C 3 HOH A 15 514 514 HOH HOH . C 3 HOH A 16 515 515 HOH HOH . C 3 HOH A 17 516 516 HOH HOH . C 3 HOH A 18 517 517 HOH HOH . C 3 HOH A 19 518 518 HOH HOH . C 3 HOH A 20 519 519 HOH HOH . C 3 HOH A 21 520 520 HOH HOH . C 3 HOH A 22 521 521 HOH HOH . C 3 HOH A 23 522 522 HOH HOH . C 3 HOH A 24 523 523 HOH HOH . C 3 HOH A 25 524 524 HOH HOH . C 3 HOH A 26 525 525 HOH HOH . C 3 HOH A 27 526 526 HOH HOH . C 3 HOH A 28 527 527 HOH HOH . C 3 HOH A 29 528 528 HOH HOH . C 3 HOH A 30 529 529 HOH HOH . C 3 HOH A 31 530 530 HOH HOH . C 3 HOH A 32 531 531 HOH HOH . C 3 HOH A 33 532 532 HOH HOH . C 3 HOH A 34 533 533 HOH HOH . C 3 HOH A 35 534 534 HOH HOH . C 3 HOH A 36 535 535 HOH HOH . C 3 HOH A 37 536 536 HOH HOH . C 3 HOH A 38 537 537 HOH HOH . C 3 HOH A 39 538 538 HOH HOH . C 3 HOH A 40 539 539 HOH HOH . C 3 HOH A 41 540 540 HOH HOH . C 3 HOH A 42 541 541 HOH HOH . C 3 HOH A 43 542 542 HOH HOH . C 3 HOH A 44 543 543 HOH HOH . C 3 HOH A 45 544 544 HOH HOH . C 3 HOH A 46 545 545 HOH HOH . C 3 HOH A 47 546 546 HOH HOH . C 3 HOH A 48 547 547 HOH HOH . C 3 HOH A 49 548 548 HOH HOH . C 3 HOH A 50 549 549 HOH HOH . C 3 HOH A 51 550 550 HOH HOH . C 3 HOH A 52 551 551 HOH HOH . C 3 HOH A 53 552 552 HOH HOH . C 3 HOH A 54 553 553 HOH HOH . C 3 HOH A 55 554 554 HOH HOH . C 3 HOH A 56 555 555 HOH HOH . C 3 HOH A 57 556 556 HOH HOH . C 3 HOH A 58 557 557 HOH HOH . C 3 HOH A 59 558 558 HOH HOH . C 3 HOH A 60 559 559 HOH HOH . C 3 HOH A 61 560 560 HOH HOH . C 3 HOH A 62 561 561 HOH HOH . C 3 HOH A 63 562 562 HOH HOH . C 3 HOH A 64 563 563 HOH HOH . C 3 HOH A 65 564 564 HOH HOH . C 3 HOH A 66 565 565 HOH HOH . C 3 HOH A 67 566 566 HOH HOH . C 3 HOH A 68 567 567 HOH HOH . C 3 HOH A 69 568 568 HOH HOH . C 3 HOH A 70 569 569 HOH HOH . C 3 HOH A 71 570 570 HOH HOH . C 3 HOH A 72 571 571 HOH HOH . C 3 HOH A 73 572 572 HOH HOH . C 3 HOH A 74 573 573 HOH HOH . C 3 HOH A 75 574 574 HOH HOH . C 3 HOH A 76 575 575 HOH HOH . C 3 HOH A 77 576 576 HOH HOH . C 3 HOH A 78 577 577 HOH HOH . C 3 HOH A 79 578 578 HOH HOH . C 3 HOH A 80 579 579 HOH HOH . C 3 HOH A 81 580 580 HOH HOH . C 3 HOH A 82 581 581 HOH HOH . C 3 HOH A 83 582 582 HOH HOH . C 3 HOH A 84 583 583 HOH HOH . C 3 HOH A 85 584 584 HOH HOH . C 3 HOH A 86 585 585 HOH HOH . C 3 HOH A 87 586 586 HOH HOH . C 3 HOH A 88 587 587 HOH HOH . C 3 HOH A 89 588 588 HOH HOH . C 3 HOH A 90 589 589 HOH HOH . C 3 HOH A 91 590 590 HOH HOH . C 3 HOH A 92 591 591 HOH HOH . C 3 HOH A 93 592 592 HOH HOH . C 3 HOH A 94 593 593 HOH HOH . C 3 HOH A 95 594 594 HOH HOH . C 3 HOH A 96 595 595 HOH HOH . C 3 HOH A 97 596 596 HOH HOH . C 3 HOH A 98 597 597 HOH HOH . C 3 HOH A 99 598 598 HOH HOH . C 3 HOH A 100 599 599 HOH HOH . C 3 HOH A 101 600 600 HOH HOH . C 3 HOH A 102 601 601 HOH HOH . C 3 HOH A 103 602 602 HOH HOH . C 3 HOH A 104 603 603 HOH HOH . C 3 HOH A 105 604 604 HOH HOH . C 3 HOH A 106 605 605 HOH HOH . C 3 HOH A 107 606 606 HOH HOH . C 3 HOH A 108 607 607 HOH HOH . C 3 HOH A 109 608 608 HOH HOH . C 3 HOH A 110 609 609 HOH HOH . C 3 HOH A 111 610 610 HOH HOH . C 3 HOH A 112 611 611 HOH HOH . C 3 HOH A 113 612 612 HOH HOH . C 3 HOH A 114 613 613 HOH HOH . C 3 HOH A 115 614 614 HOH HOH . C 3 HOH A 116 615 615 HOH HOH . C 3 HOH A 117 616 616 HOH HOH . C 3 HOH A 118 617 617 HOH HOH . C 3 HOH A 119 618 618 HOH HOH . C 3 HOH A 120 619 619 HOH HOH . C 3 HOH A 121 620 620 HOH HOH . C 3 HOH A 122 621 621 HOH HOH . C 3 HOH A 123 622 622 HOH HOH . C 3 HOH A 124 623 623 HOH HOH . C 3 HOH A 125 624 624 HOH HOH . C 3 HOH A 126 625 625 HOH HOH . C 3 HOH A 127 626 626 HOH HOH . C 3 HOH A 128 627 627 HOH HOH . C 3 HOH A 129 628 628 HOH HOH . C 3 HOH A 130 629 629 HOH HOH . C 3 HOH A 131 630 630 HOH HOH . C 3 HOH A 132 631 631 HOH HOH . C 3 HOH A 133 632 632 HOH HOH . C 3 HOH A 134 633 633 HOH HOH . C 3 HOH A 135 634 634 HOH HOH . C 3 HOH A 136 635 635 HOH HOH . C 3 HOH A 137 636 636 HOH HOH . C 3 HOH A 138 637 637 HOH HOH . C 3 HOH A 139 638 638 HOH HOH . C 3 HOH A 140 639 639 HOH HOH . C 3 HOH A 141 640 640 HOH HOH . C 3 HOH A 142 641 641 HOH HOH . C 3 HOH A 143 642 642 HOH HOH . C 3 HOH A 144 643 643 HOH HOH . C 3 HOH A 145 644 644 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . B 2 -0.228 16.69 21.264 1 29.59 ? CHA HEM 420 A 1 HETATM 2 C CHB HEM . . . B 2 -2.56 14.868 17.414 1 22.1 ? CHB HEM 420 A 1 HETATM 3 C CHC HEM . . . B 2 1.727 13.615 15.629 1 22.56 ? CHC HEM 420 A 1 HETATM 4 C CHD HEM . . . B 2 4.051 15.062 19.625 1 28.81 ? CHD HEM 420 A 1 HETATM 5 C C1A HEM . . . B 2 -1.204 16.325 20.361 1 26.24 ? C1A HEM 420 A 1 HETATM 6 C C2A HEM . . . B 2 -2.602 16.636 20.529 1 27.08 ? C2A HEM 420 A 1 HETATM 7 C C3A HEM . . . B 2 -3.262 16.135 19.471 1 24.22 ? C3A HEM 420 A 1 HETATM 8 C C4A HEM . . . B 2 -2.284 15.497 18.612 1 25.76 ? C4A HEM 420 A 1 HETATM 9 C CMA HEM . . . B 2 -4.78 16.225 19.208 1 18.06 ? CMA HEM 420 A 1 HETATM 10 C CAA HEM . . . B 2 -3.221 17.428 21.717 1 29.42 ? CAA HEM 420 A 1 HETATM 11 C CBA HEM . . . B 2 -3.886 16.505 22.739 1 31.78 ? CBA HEM 420 A 1 HETATM 12 C CGA HEM . . . B 2 -4.58 17.301 23.844 1 33.8 ? CGA HEM 420 A 1 HETATM 13 O O1A HEM . . . B 2 -4.842 16.7 24.908 1 36.57 ? O1A HEM 420 A 1 HETATM 14 O O2A HEM . . . B 2 -4.903 18.515 23.703 1 31.32 ? O2A HEM 420 A 1 HETATM 15 C C1B HEM . . . B 2 -1.589 14.384 16.579 1 21.66 ? C1B HEM 420 A 1 HETATM 16 C C2B HEM . . . B 2 -1.811 13.829 15.274 1 19.12 ? C2B HEM 420 A 1 HETATM 17 C C3B HEM . . . B 2 -0.628 13.474 14.76 1 17.61 ? C3B HEM 420 A 1 HETATM 18 C C4B HEM . . . B 2 0.385 13.806 15.755 1 21.14 ? C4B HEM 420 A 1 HETATM 19 C CMB HEM . . . B 2 -3.228 13.686 14.687 1 17.04 ? CMB HEM 420 A 1 HETATM 20 C CAB HEM . . . B 2 -0.322 12.787 13.41 1 19.95 ? CAB HEM 420 A 1 HETATM 21 C CBB HEM . . . B 2 -1.26 12.55 12.447 1 22.55 ? CBB HEM 420 A 1 HETATM 22 C C1C HEM . . . B 2 2.713 13.905 16.544 1 25.73 ? C1C HEM 420 A 1 HETATM 23 C C2C HEM . . . B 2 4.116 13.636 16.328 1 26.76 ? C2C HEM 420 A 1 HETATM 24 C C3C HEM . . . B 2 4.775 13.998 17.428 1 26 ? C3C HEM 420 A 1 HETATM 25 C C4C HEM . . . B 2 3.794 14.526 18.373 1 29.72 ? C4C HEM 420 A 1 HETATM 26 C CMC HEM . . . B 2 4.71 13.043 15.019 1 25.31 ? CMC HEM 420 A 1 HETATM 27 C CAC HEM . . . B 2 6.302 13.937 17.609 1 29.92 ? CAC HEM 420 A 1 HETATM 28 C CBC HEM . . . B 2 6.832 13.039 18.437 1 32.38 ? CBC HEM 420 A 1 HETATM 29 C C1D HEM . . . B 2 3.13 15.669 20.44 1 28.79 ? C1D HEM 420 A 1 HETATM 30 C C2D HEM . . . B 2 3.413 16.216 21.746 1 31 ? C2D HEM 420 A 1 HETATM 31 C C3D HEM . . . B 2 2.083 16.725 22.273 1 29.92 ? C3D HEM 420 A 1 HETATM 32 C C4D HEM . . . B 2 1.107 16.412 21.236 1 29.19 ? C4D HEM 420 A 1 HETATM 33 C CMD HEM . . . B 2 4.763 16.282 22.487 1 30.87 ? CMD HEM 420 A 1 HETATM 34 C CAD HEM . . . B 2 1.909 17.425 23.646 1 29.35 ? CAD HEM 420 A 1 HETATM 35 C CBD HEM . . . B 2 1.677 18.927 23.458 1 26.4 ? CBD HEM 420 A 1 HETATM 36 C CGD HEM . . . B 2 1.45 19.547 24.831 1 27.48 ? CGD HEM 420 A 1 HETATM 37 O O1D HEM . . . B 2 1.872 20.688 25.039 1 29.91 ? O1D HEM 420 A 1 HETATM 38 O O2D HEM . . . B 2 0.869 18.91 25.74 1 28.81 ? O2D HEM 420 A 1 HETATM 39 N NA HEM . . . B 2 -1.033 15.652 19.162 1 24.05 ? NA HEM 420 A 1 HETATM 40 N NB HEM . . . B 2 -0.225 14.365 16.835 1 25.17 ? NB HEM 420 A 1 HETATM 41 N NC HEM . . . B 2 2.541 14.459 17.797 1 24.44 ? NC HEM 420 A 1 HETATM 42 N ND HEM . . . B 2 1.758 15.811 20.176 1 30.48 ? ND HEM 420 A 1 HETATM 43 FE FE HEM . . . B 2 0.77 15.122 18.448 1 27.43 ? FE HEM 420 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 43 #