data_3P78
#
_model_server_result.job_id            REBjaSce1-prcSYo-1Cong 
_model_server_result.datetime_utc      '2024-10-20 20:42:43' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p78 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":362}' 
#
_entry.id    3P78 
#
_exptl.entry_id    3P78 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              485.619 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-{5-tert-butyl-3-[(1,1-dioxidothiomorpholin-4-yl)carbonyl]thiophen-2-yl}-3-naphthalen-2-ylurea 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P78 
_cell.length_a            68.81 
_cell.length_b            70.99 
_cell.length_c            76.05 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P78 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C24 H27 N3 O4 S2' 
_chem_comp.formula_weight    485.619 
_chem_comp.id                P78 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-{5-tert-butyl-3-[(1,1-dioxidothiomorpholin-4-yl)carbonyl]thiophen-2-yl}-3-naphthalen-2-ylurea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 S2 P78 sing 283 n y 
C1 C5 P78 doub 284 n y 
C1 C6 P78 sing 285 n n 
O1 S1 P78 doub 286 n n 
S1 C28 P78 sing 287 n n 
S1 C31 P78 sing 288 n n 
S1 O33 P78 doub 289 n n 
C2 C14 P78 doub 290 n y 
C2 C20 P78 sing 291 n y 
S2 C3 P78 sing 292 n y 
C3 C4 P78 doub 293 n y 
C3 N12 P78 sing 294 n n 
C4 C5 P78 sing 295 n y 
C4 C10 P78 sing 296 n n 
C6 C7 P78 sing 297 n n 
C6 C8 P78 sing 298 n n 
C6 C9 P78 sing 299 n n 
C10 O11 P78 doub 300 n n 
C10 N26 P78 sing 301 n n 
C11 C12 P78 doub 302 n y 
C11 C19 P78 sing 303 n y 
C12 C14 P78 sing 304 n y 
N12 C13 P78 sing 305 n n 
C13 O14 P78 doub 306 n n 
C13 N15 P78 sing 307 n n 
N15 C16 P78 sing 308 n n 
C16 C17 P78 doub 309 n y 
C16 C21 P78 sing 310 n y 
C17 C18 P78 sing 311 n y 
C18 C19 P78 doub 312 n y 
C19 C20 P78 sing 313 n y 
C20 C21 P78 doub 314 n y 
N26 C27 P78 sing 315 n n 
N26 C32 P78 sing 316 n n 
C27 C28 P78 sing 317 n n 
C31 C32 P78 sing 318 n n 
C2 H2 P78 sing 319 n n 
C5 H5 P78 sing 320 n n 
C7 H7 P78 sing 321 n n 
C7 H7A P78 sing 322 n n 
C7 H7B P78 sing 323 n n 
C8 H8 P78 sing 324 n n 
C8 H8A P78 sing 325 n n 
C8 H8B P78 sing 326 n n 
C9 H9 P78 sing 327 n n 
C9 H9A P78 sing 328 n n 
C9 H9B P78 sing 329 n n 
C11 H11 P78 sing 330 n n 
C12 H12 P78 sing 331 n n 
N12 HN12 P78 sing 332 n n 
C14 H14 P78 sing 333 n n 
N15 HN15 P78 sing 334 n n 
C17 H17 P78 sing 335 n n 
C18 H18 P78 sing 336 n n 
C21 H21 P78 sing 337 n n 
C27 H27 P78 sing 338 n n 
C27 H27A P78 sing 339 n n 
C28 H28 P78 sing 340 n n 
C28 H28A P78 sing 341 n n 
C31 H31 P78 sing 342 n n 
C31 H31A P78 sing 343 n n 
C32 H32 P78 sing 344 n n 
C32 H32A P78 sing 345 n n 
#
_atom_sites.entry_id                     3P78 
_atom_sites.fract_transf_matrix[1][1]    0.014533 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014086 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013149 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 361 361 BOG BOG . 
C 3 P78 A 1 362 362 P78 P78 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 P78 . . . C 3 49.047 27.176 -18.087 1 17.86 ? C1 P78 362 A 1 
HETATM 2 O O1 P78 . . . C 3 52.253 31.236 -11.768 1 32.66 ? O1 P78 362 A 1 
HETATM 3 S S1 P78 . . . C 3 51.542 29.707 -11.896 1 31.15 ? S1 P78 362 A 1 
HETATM 4 C C2 P78 . . . C 3 57.469 31.338 -21.982 1 19.43 ? C2 P78 362 A 1 
HETATM 5 S S2 P78 . . . C 3 50.177 28.074 -19.022 1 17.13 ? S2 P78 362 A 1 
HETATM 6 C C3 P78 . . . C 3 51.336 28.307 -17.77 1 19.63 ? C3 P78 362 A 1 
HETATM 7 C C4 P78 . . . C 3 50.77 27.66 -16.658 1 19.22 ? C4 P78 362 A 1 
HETATM 8 C C5 P78 . . . C 3 49.538 27.038 -16.792 1 18.55 ? C5 P78 362 A 1 
HETATM 9 C C6 P78 . . . C 3 47.752 26.704 -18.656 1 15.93 ? C6 P78 362 A 1 
HETATM 10 C C7 P78 . . . C 3 48.022 25.578 -19.632 1 16.18 ? C7 P78 362 A 1 
HETATM 11 C C8 P78 . . . C 3 46.643 26.466 -17.624 1 14.78 ? C8 P78 362 A 1 
HETATM 12 C C9 P78 . . . C 3 47.229 27.666 -19.718 1 16.08 ? C9 P78 362 A 1 
HETATM 13 C C10 P78 . . . C 3 51.603 27.651 -15.395 1 23.91 ? C10 P78 362 A 1 
HETATM 14 C C11 P78 . . . C 3 56.44 33.888 -22.453 1 18.07 ? C11 P78 362 A 1 
HETATM 15 O O11 P78 . . . C 3 52.815 27.582 -15.551 1 18.39 ? O11 P78 362 A 1 
HETATM 16 C C12 P78 . . . C 3 57.595 33.462 -23.15 1 20.36 ? C12 P78 362 A 1 
HETATM 17 N N12 P78 . . . C 3 52.562 28.943 -17.806 1 17.82 ? N12 P78 362 A 1 
HETATM 18 C C13 P78 . . . C 3 52.811 29.874 -18.763 1 19.5 ? C13 P78 362 A 1 
HETATM 19 C C14 P78 . . . C 3 58.138 32.178 -22.922 1 18.05 ? C14 P78 362 A 1 
HETATM 20 O O14 P78 . . . C 3 51.827 30.213 -19.636 1 21.32 ? O14 P78 362 A 1 
HETATM 21 N N15 P78 . . . C 3 53.993 30.417 -18.816 1 19.15 ? N15 P78 362 A 1 
HETATM 22 C C16 P78 . . . C 3 54.487 31.324 -19.686 1 20.06 ? C16 P78 362 A 1 
HETATM 23 C C17 P78 . . . C 3 53.97 32.599 -19.927 1 20.02 ? C17 P78 362 A 1 
HETATM 24 C C18 P78 . . . C 3 54.622 33.432 -20.843 1 20.89 ? C18 P78 362 A 1 
HETATM 25 C C19 P78 . . . C 3 55.792 33.029 -21.528 1 19.24 ? C19 P78 362 A 1 
HETATM 26 C C20 P78 . . . C 3 56.318 31.76 -21.288 1 17.85 ? C20 P78 362 A 1 
HETATM 27 C C21 P78 . . . C 3 55.652 30.927 -20.368 1 21.62 ? C21 P78 362 A 1 
HETATM 28 N N26 P78 . . . C 3 51.125 27.649 -14.114 1 26.34 ? N26 P78 362 A 1 
HETATM 29 C C27 P78 . . . C 3 49.914 28.348 -13.706 1 28.14 ? C27 P78 362 A 1 
HETATM 30 C C28 P78 . . . C 3 50.317 29.717 -13.11 1 33.93 ? C28 P78 362 A 1 
HETATM 31 C C31 P78 . . . C 3 52.746 28.665 -12.541 1 29.99 ? C31 P78 362 A 1 
HETATM 32 C C32 P78 . . . C 3 52.131 27.361 -13.073 1 26.88 ? C32 P78 362 A 1 
HETATM 33 O O33 P78 . . . C 3 50.822 28.779 -10.675 1 35.31 ? O33 P78 362 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           308 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           33 
#