data_3P79 # _model_server_result.job_id kDS1CFJXrsip4BgsZW248Q _model_server_result.datetime_utc '2024-11-25 00:48:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p79 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":362}' # _entry.id 3P79 # _exptl.entry_id 3P79 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 483.583 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-{3-tert-butyl-1-[2-(1,1-dioxidothiomorpholin-4-yl)-2-oxoethyl]-1H-pyrazol-5-yl}-3-naphthalen-2-ylurea _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P79 _cell.length_a 68.49 _cell.length_b 71.12 _cell.length_c 75.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P79 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H29 N5 O4 S' _chem_comp.formula_weight 483.583 _chem_comp.id P79 _chem_comp.mon_nstd_flag . _chem_comp.name 1-{3-tert-butyl-1-[2-(1,1-dioxidothiomorpholin-4-yl)-2-oxoethyl]-1H-pyrazol-5-yl}-3-naphthalen-2-ylurea _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 P79 sing 285 n y C1 C6 P79 doub 286 n y C2 N4 P79 doub 287 n y C2 C5 P79 sing 288 n n N3 N4 P79 sing 289 n y N3 C6 P79 sing 290 n y N3 C7 P79 sing 291 n n C5 C21 P79 sing 292 n n C5 C22 P79 sing 293 n n C5 C23 P79 sing 294 n n C6 N20 P79 sing 295 n n C7 C8 P79 sing 296 n n C8 N9 P79 sing 297 n n C8 O10 P79 doub 298 n n N9 C28 P79 sing 299 n n N9 C32 P79 sing 300 n n C11 N12 P79 sing 301 n n C11 O13 P79 doub 302 n n C11 N20 P79 sing 303 n n N12 C14 P79 sing 304 n n C14 C15 P79 doub 305 n y C14 C19 P79 sing 306 n y C15 C16 P79 sing 307 n y C16 C17 P79 doub 308 n y C17 C18 P79 sing 309 n y C17 C24 P79 sing 310 n y C18 C19 P79 doub 311 n y C18 C27 P79 sing 312 n y C24 C25 P79 doub 313 n y C25 C26 P79 sing 314 n y C26 C27 P79 doub 315 n y C28 C29 P79 sing 316 n n C29 S30 P79 sing 317 n n S30 C31 P79 sing 318 n n S30 O33 P79 doub 319 n n S30 O34 P79 doub 320 n n C31 C32 P79 sing 321 n n C1 H1 P79 sing 322 n n C7 H7 P79 sing 323 n n C7 H7A P79 sing 324 n n N12 HN12 P79 sing 325 n n C15 H15 P79 sing 326 n n C16 H16 P79 sing 327 n n C19 H19 P79 sing 328 n n N20 HN20 P79 sing 329 n n C21 H21 P79 sing 330 n n C21 H21A P79 sing 331 n n C21 H21B P79 sing 332 n n C22 H22 P79 sing 333 n n C22 H22A P79 sing 334 n n C22 H22B P79 sing 335 n n C23 H23 P79 sing 336 n n C23 H23A P79 sing 337 n n C23 H23B P79 sing 338 n n C24 H24 P79 sing 339 n n C25 H25 P79 sing 340 n n C26 H26 P79 sing 341 n n C27 H27 P79 sing 342 n n C28 H28 P79 sing 343 n n C28 H28A P79 sing 344 n n C29 H29 P79 sing 345 n n C29 H29A P79 sing 346 n n C31 H31 P79 sing 347 n n C31 H31A P79 sing 348 n n C32 H32 P79 sing 349 n n C32 H32A P79 sing 350 n n # _atom_sites.entry_id 3P79 _atom_sites.fract_transf_matrix[1][1] 0.014601 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014061 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013226 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG A 1 361 361 BOG BOG . C 3 P79 A 1 362 362 P79 P79 . D 4 HOH A 1 363 363 HOH HOH . D 4 HOH A 2 364 364 HOH HOH . D 4 HOH A 3 365 365 HOH HOH . D 4 HOH A 4 366 366 HOH HOH . D 4 HOH A 5 367 367 HOH HOH . D 4 HOH A 6 368 368 HOH HOH . D 4 HOH A 7 369 369 HOH HOH . D 4 HOH A 8 370 370 HOH HOH . D 4 HOH A 9 371 371 HOH HOH . D 4 HOH A 10 372 372 HOH HOH . D 4 HOH A 11 373 373 HOH HOH . D 4 HOH A 12 374 374 HOH HOH . D 4 HOH A 13 375 375 HOH HOH . D 4 HOH A 14 376 376 HOH HOH . D 4 HOH A 15 377 377 HOH HOH . D 4 HOH A 16 378 378 HOH HOH . D 4 HOH A 17 379 379 HOH HOH . D 4 HOH A 18 380 380 HOH HOH . D 4 HOH A 19 381 381 HOH HOH . D 4 HOH A 20 382 382 HOH HOH . D 4 HOH A 21 383 383 HOH HOH . D 4 HOH A 22 384 384 HOH HOH . D 4 HOH A 23 385 385 HOH HOH . D 4 HOH A 24 386 386 HOH HOH . D 4 HOH A 25 387 387 HOH HOH . D 4 HOH A 26 388 388 HOH HOH . D 4 HOH A 27 389 389 HOH HOH . D 4 HOH A 28 390 390 HOH HOH . D 4 HOH A 29 391 391 HOH HOH . D 4 HOH A 30 392 392 HOH HOH . D 4 HOH A 31 393 393 HOH HOH . D 4 HOH A 32 394 394 HOH HOH . D 4 HOH A 33 395 395 HOH HOH . D 4 HOH A 34 396 396 HOH HOH . D 4 HOH A 35 397 397 HOH HOH . D 4 HOH A 36 398 398 HOH HOH . D 4 HOH A 37 399 399 HOH HOH . D 4 HOH A 38 400 400 HOH HOH . D 4 HOH A 39 401 401 HOH HOH . D 4 HOH A 40 402 402 HOH HOH . D 4 HOH A 41 403 403 HOH HOH . D 4 HOH A 42 404 404 HOH HOH . D 4 HOH A 43 405 405 HOH HOH . D 4 HOH A 44 406 406 HOH HOH . D 4 HOH A 45 407 407 HOH HOH . D 4 HOH A 46 408 408 HOH HOH . D 4 HOH A 47 409 409 HOH HOH . D 4 HOH A 48 410 410 HOH HOH . D 4 HOH A 49 411 411 HOH HOH . D 4 HOH A 50 412 412 HOH HOH . D 4 HOH A 51 413 413 HOH HOH . D 4 HOH A 52 414 414 HOH HOH . D 4 HOH A 53 415 415 HOH HOH . D 4 HOH A 54 416 416 HOH HOH . D 4 HOH A 55 417 417 HOH HOH . D 4 HOH A 56 418 418 HOH HOH . D 4 HOH A 57 419 419 HOH HOH . D 4 HOH A 58 420 420 HOH HOH . D 4 HOH A 59 421 421 HOH HOH . D 4 HOH A 60 422 422 HOH HOH . D 4 HOH A 61 423 423 HOH HOH . D 4 HOH A 62 424 424 HOH HOH . D 4 HOH A 63 425 425 HOH HOH . D 4 HOH A 64 426 426 HOH HOH . D 4 HOH A 65 427 427 HOH HOH . D 4 HOH A 66 428 428 HOH HOH . D 4 HOH A 67 429 429 HOH HOH . D 4 HOH A 68 430 430 HOH HOH . D 4 HOH A 69 431 431 HOH HOH . D 4 HOH A 70 432 432 HOH HOH . D 4 HOH A 71 433 433 HOH HOH . D 4 HOH A 72 434 434 HOH HOH . D 4 HOH A 73 435 435 HOH HOH . D 4 HOH A 74 436 436 HOH HOH . D 4 HOH A 75 437 437 HOH HOH . D 4 HOH A 76 438 438 HOH HOH . D 4 HOH A 77 439 439 HOH HOH . D 4 HOH A 78 440 440 HOH HOH . D 4 HOH A 79 441 441 HOH HOH . D 4 HOH A 80 442 442 HOH HOH . D 4 HOH A 81 443 443 HOH HOH . D 4 HOH A 82 444 444 HOH HOH . D 4 HOH A 83 445 445 HOH HOH . D 4 HOH A 84 446 446 HOH HOH . D 4 HOH A 85 447 447 HOH HOH . D 4 HOH A 86 448 448 HOH HOH . D 4 HOH A 87 449 449 HOH HOH . D 4 HOH A 88 450 450 HOH HOH . D 4 HOH A 89 451 451 HOH HOH . D 4 HOH A 90 452 452 HOH HOH . D 4 HOH A 91 453 453 HOH HOH . D 4 HOH A 92 454 454 HOH HOH . D 4 HOH A 93 455 455 HOH HOH . D 4 HOH A 94 456 456 HOH HOH . D 4 HOH A 95 457 457 HOH HOH . D 4 HOH A 96 458 458 HOH HOH . D 4 HOH A 97 459 459 HOH HOH . D 4 HOH A 98 460 460 HOH HOH . D 4 HOH A 99 461 461 HOH HOH . D 4 HOH A 100 462 462 HOH HOH . D 4 HOH A 101 463 463 HOH HOH . D 4 HOH A 102 464 464 HOH HOH . D 4 HOH A 103 465 465 HOH HOH . D 4 HOH A 104 466 466 HOH HOH . D 4 HOH A 105 467 467 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 P79 . . . C 3 50.069 28.086 -18.821 1 19.85 ? C1 P79 362 A 1 HETATM 2 C C2 P79 . . . C 3 48.943 27.47 -18.27 1 19.87 ? C2 P79 362 A 1 HETATM 3 N N3 P79 . . . C 3 50.019 28.306 -16.615 1 23.42 ? N3 P79 362 A 1 HETATM 4 N N4 P79 . . . C 3 48.9 27.626 -16.933 1 18.74 ? N4 P79 362 A 1 HETATM 5 C C5 P79 . . . C 3 47.758 26.765 -18.928 1 18.92 ? C5 P79 362 A 1 HETATM 6 C C6 P79 . . . C 3 50.744 28.639 -17.731 1 21.63 ? C6 P79 362 A 1 HETATM 7 C C7 P79 . . . C 3 50.335 28.738 -15.227 1 20.95 ? C7 P79 362 A 1 HETATM 8 C C8 P79 . . . C 3 51.498 28.027 -14.629 1 27.41 ? C8 P79 362 A 1 HETATM 9 N N9 P79 . . . C 3 51.553 27.891 -13.296 1 29.58 ? N9 P79 362 A 1 HETATM 10 O O10 P79 . . . C 3 52.342 27.549 -15.362 1 22.91 ? O10 P79 362 A 1 HETATM 11 C C11 P79 . . . C 3 52.424 30.097 -18.641 1 20.71 ? C11 P79 362 A 1 HETATM 12 N N12 P79 . . . C 3 53.681 30.452 -18.715 1 23.32 ? N12 P79 362 A 1 HETATM 13 O O13 P79 . . . C 3 51.603 30.512 -19.599 1 19.89 ? O13 P79 362 A 1 HETATM 14 C C14 P79 . . . C 3 54.217 31.357 -19.551 1 25.07 ? C14 P79 362 A 1 HETATM 15 C C15 P79 . . . C 3 53.715 32.625 -19.79 1 23.62 ? C15 P79 362 A 1 HETATM 16 C C16 P79 . . . C 3 54.38 33.514 -20.658 1 28.37 ? C16 P79 362 A 1 HETATM 17 C C17 P79 . . . C 3 55.526 33.052 -21.323 1 26.16 ? C17 P79 362 A 1 HETATM 18 C C18 P79 . . . C 3 56.016 31.77 -21.102 1 24.77 ? C18 P79 362 A 1 HETATM 19 C C19 P79 . . . C 3 55.392 30.905 -20.182 1 27.57 ? C19 P79 362 A 1 HETATM 20 N N20 P79 . . . C 3 51.956 29.34 -17.619 1 19.91 ? N20 P79 362 A 1 HETATM 21 C C21 P79 . . . C 3 46.679 26.509 -17.865 1 16.66 ? C21 P79 362 A 1 HETATM 22 C C22 P79 . . . C 3 48.117 25.584 -19.809 1 19.22 ? C22 P79 362 A 1 HETATM 23 C C23 P79 . . . C 3 47.093 27.755 -19.848 1 18.62 ? C23 P79 362 A 1 HETATM 24 C C24 P79 . . . C 3 56.176 33.938 -22.221 1 28.36 ? C24 P79 362 A 1 HETATM 25 C C25 P79 . . . C 3 57.346 33.479 -22.874 1 27.85 ? C25 P79 362 A 1 HETATM 26 C C26 P79 . . . C 3 57.859 32.178 -22.64 1 25.62 ? C26 P79 362 A 1 HETATM 27 C C27 P79 . . . C 3 57.201 31.311 -21.717 1 22.9 ? C27 P79 362 A 1 HETATM 28 C C28 P79 . . . C 3 50.572 28.502 -12.409 1 32.26 ? C28 P79 362 A 1 HETATM 29 C C29 P79 . . . C 3 51.287 29.462 -11.445 1 34.05 ? C29 P79 362 A 1 HETATM 30 S S30 P79 . . . C 3 52.508 28.622 -10.603 1 34.15 ? S30 P79 362 A 1 HETATM 31 C C31 P79 . . . C 3 53.44 27.855 -11.826 1 29.54 ? C31 P79 362 A 1 HETATM 32 C C32 P79 . . . C 3 52.484 26.981 -12.642 1 26.77 ? C32 P79 362 A 1 HETATM 33 O O33 P79 . . . C 3 51.823 27.38 -9.76 1 35.97 ? O33 P79 362 A 1 HETATM 34 O O34 P79 . . . C 3 53.481 29.818 -9.921 1 37.12 ? O34 P79 362 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 34 #