data_3P7A
#
_model_server_result.job_id            Bkrj97Se-PwlpDTcQ3RicA 
_model_server_result.datetime_utc      '2024-11-06 20:37:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p7a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":362}' 
#
_entry.id    3P7A 
#
_exptl.entry_id    3P7A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              457.609 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[5-tert-butyl-2-(1,1-dioxidothiomorpholin-4-yl)thiophen-3-yl]-3-naphthalen-1-ylurea 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P7A 
_cell.length_a            65.14 
_cell.length_b            74.51 
_cell.length_c            74.41 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P7A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C23 H27 N3 O3 S2' 
_chem_comp.formula_weight    457.609 
_chem_comp.id                P7A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[5-tert-butyl-2-(1,1-dioxidothiomorpholin-4-yl)thiophen-3-yl]-3-naphthalen-1-ylurea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 P7A doub 285 n n 
C1 N2 P7A sing 286 n n 
C1 N9 P7A sing 287 n n 
N1 C2 P7A sing 288 n n 
N1 C20 P7A sing 289 n n 
N1 C24 P7A sing 290 n n 
S1 C2 P7A sing 291 n y 
S1 C13 P7A sing 292 n y 
C2 C10 P7A doub 293 n y 
N2 C3 P7A sing 294 n n 
O2 S2 P7A doub 295 n n 
S2 O3 P7A doub 296 n n 
S2 C21 P7A sing 297 n n 
S2 C23 P7A sing 298 n n 
C3 C4 P7A doub 299 n y 
C3 C8 P7A sing 300 n y 
C4 C5 P7A sing 301 n y 
C4 C31 P7A sing 302 n y 
C5 C6 P7A doub 303 n y 
C5 C34 P7A sing 304 n y 
C6 C7 P7A sing 305 n y 
C7 C8 P7A doub 306 n y 
N9 C10 P7A sing 307 n n 
C10 C14 P7A sing 308 n y 
C13 C14 P7A doub 309 n y 
C13 C16 P7A sing 310 n n 
C16 C17 P7A sing 311 n n 
C16 C18 P7A sing 312 n n 
C16 C19 P7A sing 313 n n 
C20 C21 P7A sing 314 n n 
C23 C24 P7A sing 315 n n 
C31 C32 P7A doub 316 n y 
C32 C33 P7A sing 317 n y 
C33 C34 P7A doub 318 n y 
N2 HN2 P7A sing 319 n n 
C6 H6 P7A sing 320 n n 
C7 H7 P7A sing 321 n n 
C8 H8 P7A sing 322 n n 
N9 HN9 P7A sing 323 n n 
C14 H14 P7A sing 324 n n 
C17 H17 P7A sing 325 n n 
C17 H17A P7A sing 326 n n 
C17 H17B P7A sing 327 n n 
C18 H18 P7A sing 328 n n 
C18 H18A P7A sing 329 n n 
C18 H18B P7A sing 330 n n 
C19 H19 P7A sing 331 n n 
C19 H19A P7A sing 332 n n 
C19 H19B P7A sing 333 n n 
C20 H20 P7A sing 334 n n 
C20 H20A P7A sing 335 n n 
C21 H21 P7A sing 336 n n 
C21 H21A P7A sing 337 n n 
C23 H23 P7A sing 338 n n 
C23 H23A P7A sing 339 n n 
C24 H24 P7A sing 340 n n 
C24 H24A P7A sing 341 n n 
C31 H31 P7A sing 342 n n 
C32 H32 P7A sing 343 n n 
C33 H33 P7A sing 344 n n 
C34 H34 P7A sing 345 n n 
#
_atom_sites.entry_id                     3P7A 
_atom_sites.fract_transf_matrix[1][1]    0.015352 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013421 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013439 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 361 361 BOG BOG . 
C 3 P7A A 1 362 362 P7A P7A . 
D 4 HOH A 1 363 363 HOH HOH . 
D 4 HOH A 2 364 364 HOH HOH . 
D 4 HOH A 3 365 365 HOH HOH . 
D 4 HOH A 4 366 366 HOH HOH . 
D 4 HOH A 5 367 367 HOH HOH . 
D 4 HOH A 6 368 368 HOH HOH . 
D 4 HOH A 7 369 369 HOH HOH . 
D 4 HOH A 8 370 370 HOH HOH . 
D 4 HOH A 9 371 371 HOH HOH . 
D 4 HOH A 10 372 372 HOH HOH . 
D 4 HOH A 11 373 373 HOH HOH . 
D 4 HOH A 12 374 374 HOH HOH . 
D 4 HOH A 13 375 375 HOH HOH . 
D 4 HOH A 14 376 376 HOH HOH . 
D 4 HOH A 15 377 377 HOH HOH . 
D 4 HOH A 16 378 378 HOH HOH . 
D 4 HOH A 17 379 379 HOH HOH . 
D 4 HOH A 18 380 380 HOH HOH . 
D 4 HOH A 19 381 381 HOH HOH . 
D 4 HOH A 20 382 382 HOH HOH . 
D 4 HOH A 21 383 383 HOH HOH . 
D 4 HOH A 22 384 384 HOH HOH . 
D 4 HOH A 23 385 385 HOH HOH . 
D 4 HOH A 24 386 386 HOH HOH . 
D 4 HOH A 25 387 387 HOH HOH . 
D 4 HOH A 26 388 388 HOH HOH . 
D 4 HOH A 27 389 389 HOH HOH . 
D 4 HOH A 28 390 390 HOH HOH . 
D 4 HOH A 29 391 391 HOH HOH . 
D 4 HOH A 30 392 392 HOH HOH . 
D 4 HOH A 31 393 393 HOH HOH . 
D 4 HOH A 32 394 394 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 P7A . . . C 3 49.825 32.311 -18.577 1 37.27 ? C1 P7A 362 A 1 
HETATM 2 N N1 P7A . . . C 3 49.01 30.666 -14.729 1 40.01 ? N1 P7A 362 A 1 
HETATM 3 O O1 P7A . . . C 3 48.758 32.789 -19.233 1 36.02 ? O1 P7A 362 A 1 
HETATM 4 S S1 P7A . . . C 3 46.899 29.318 -15.771 1 33.41 ? S1 P7A 362 A 1 
HETATM 5 C C2 P7A . . . C 3 48.345 30.294 -15.863 1 38.45 ? C2 P7A 362 A 1 
HETATM 6 N N2 P7A . . . C 3 51.018 32.754 -18.853 1 37.32 ? N2 P7A 362 A 1 
HETATM 7 O O2 P7A . . . C 3 48.572 33.273 -10.853 1 45.8 ? O2 P7A 362 A 1 
HETATM 8 S S2 P7A . . . C 3 49.18 32.033 -11.877 1 44.78 ? S2 P7A 362 A 1 
HETATM 9 C C3 P7A . . . C 3 51.441 33.851 -19.551 1 37.92 ? C3 P7A 362 A 1 
HETATM 10 O O3 P7A . . . C 3 50.613 31.378 -11.241 1 45.67 ? O3 P7A 362 A 1 
HETATM 11 C C4 P7A . . . C 3 52.623 33.85 -20.324 1 37.65 ? C4 P7A 362 A 1 
HETATM 12 C C5 P7A . . . C 3 53.016 35.015 -21.013 1 38.74 ? C5 P7A 362 A 1 
HETATM 13 C C6 P7A . . . C 3 52.227 36.176 -20.93 1 39.24 ? C6 P7A 362 A 1 
HETATM 14 C C7 P7A . . . C 3 51.056 36.194 -20.17 1 37.74 ? C7 P7A 362 A 1 
HETATM 15 C C8 P7A . . . C 3 50.681 35.036 -19.483 1 37.26 ? C8 P7A 362 A 1 
HETATM 16 N N9 P7A . . . C 3 49.688 31.344 -17.629 1 37.16 ? N9 P7A 362 A 1 
HETATM 17 C C10 P7A . . . C 3 48.625 30.596 -17.219 1 37.32 ? C10 P7A 362 A 1 
HETATM 18 C C13 P7A . . . C 3 46.669 29.281 -17.495 1 35.79 ? C13 P7A 362 A 1 
HETATM 19 C C14 P7A . . . C 3 47.695 30.03 -18.095 1 35.36 ? C14 P7A 362 A 1 
HETATM 20 C C16 P7A . . . C 3 45.557 28.569 -18.263 1 32.85 ? C16 P7A 362 A 1 
HETATM 21 C C17 P7A . . . C 3 45.151 29.37 -19.5 1 30.4 ? C17 P7A 362 A 1 
HETATM 22 C C18 P7A . . . C 3 44.242 28.322 -17.526 1 29.98 ? C18 P7A 362 A 1 
HETATM 23 C C19 P7A . . . C 3 46.108 27.218 -18.741 1 32.89 ? C19 P7A 362 A 1 
HETATM 24 C C20 P7A . . . C 3 49.674 31.973 -14.644 1 40.58 ? C20 P7A 362 A 1 
HETATM 25 C C21 P7A . . . C 3 49.284 32.812 -13.412 1 43.95 ? C21 P7A 362 A 1 
HETATM 26 C C23 P7A . . . C 3 48.197 30.701 -12.314 1 43.16 ? C23 P7A 362 A 1 
HETATM 27 C C24 P7A . . . C 3 48.797 29.891 -13.483 1 41.12 ? C24 P7A 362 A 1 
HETATM 28 C C31 P7A . . . C 3 53.452 32.731 -20.461 1 38.12 ? C31 P7A 362 A 1 
HETATM 29 C C32 P7A . . . C 3 54.618 32.776 -21.239 1 37.92 ? C32 P7A 362 A 1 
HETATM 30 C C33 P7A . . . C 3 54.983 33.946 -21.918 1 37.83 ? C33 P7A 362 A 1 
HETATM 31 C C34 P7A . . . C 3 54.173 35.08 -21.799 1 37.85 ? C34 P7A 362 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           239 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           31 
#