data_3P7B # _model_server_result.job_id gMwu7u0eG4NWn30bnd9L8Q _model_server_result.datetime_utc '2024-11-24 21:53:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p7b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":2095}' # _entry.id 3P7B # _exptl.entry_id 3P7B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P7B _cell.length_a 68.4 _cell.length_b 70.99 _cell.length_c 75.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P7B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3P7B _atom_sites.fract_transf_matrix[1][1] 0.01462 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014086 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013236 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 P7B A 1 362 362 P7B P7B . C 3 BOG A 1 2095 2095 BOG BOG . D 4 HOH A 1 363 363 HOH HOH . D 4 HOH A 2 364 364 HOH HOH . D 4 HOH A 3 365 365 HOH HOH . D 4 HOH A 4 366 366 HOH HOH . D 4 HOH A 5 367 367 HOH HOH . D 4 HOH A 6 368 368 HOH HOH . D 4 HOH A 7 369 369 HOH HOH . D 4 HOH A 8 370 370 HOH HOH . D 4 HOH A 9 371 371 HOH HOH . D 4 HOH A 10 372 372 HOH HOH . D 4 HOH A 11 373 373 HOH HOH . D 4 HOH A 12 374 374 HOH HOH . D 4 HOH A 13 375 375 HOH HOH . D 4 HOH A 14 376 376 HOH HOH . D 4 HOH A 15 377 377 HOH HOH . D 4 HOH A 16 378 378 HOH HOH . D 4 HOH A 17 379 379 HOH HOH . D 4 HOH A 18 380 380 HOH HOH . D 4 HOH A 19 381 381 HOH HOH . D 4 HOH A 20 382 382 HOH HOH . D 4 HOH A 21 383 383 HOH HOH . D 4 HOH A 22 384 384 HOH HOH . D 4 HOH A 23 385 385 HOH HOH . D 4 HOH A 24 386 386 HOH HOH . D 4 HOH A 25 387 387 HOH HOH . D 4 HOH A 26 388 388 HOH HOH . D 4 HOH A 27 389 389 HOH HOH . D 4 HOH A 28 390 390 HOH HOH . D 4 HOH A 29 391 391 HOH HOH . D 4 HOH A 30 392 392 HOH HOH . D 4 HOH A 31 393 393 HOH HOH . D 4 HOH A 32 394 394 HOH HOH . D 4 HOH A 33 395 395 HOH HOH . D 4 HOH A 34 396 396 HOH HOH . D 4 HOH A 35 397 397 HOH HOH . D 4 HOH A 36 398 398 HOH HOH . D 4 HOH A 37 399 399 HOH HOH . D 4 HOH A 38 400 400 HOH HOH . D 4 HOH A 39 401 401 HOH HOH . D 4 HOH A 40 402 402 HOH HOH . D 4 HOH A 41 403 403 HOH HOH . D 4 HOH A 42 404 404 HOH HOH . D 4 HOH A 43 405 405 HOH HOH . D 4 HOH A 44 406 406 HOH HOH . D 4 HOH A 45 407 407 HOH HOH . D 4 HOH A 46 408 408 HOH HOH . D 4 HOH A 47 409 409 HOH HOH . D 4 HOH A 48 410 410 HOH HOH . D 4 HOH A 49 411 411 HOH HOH . D 4 HOH A 50 412 412 HOH HOH . D 4 HOH A 51 413 413 HOH HOH . D 4 HOH A 52 414 414 HOH HOH . D 4 HOH A 53 415 415 HOH HOH . D 4 HOH A 54 416 416 HOH HOH . D 4 HOH A 55 417 417 HOH HOH . D 4 HOH A 56 418 418 HOH HOH . D 4 HOH A 57 419 419 HOH HOH . D 4 HOH A 58 420 420 HOH HOH . D 4 HOH A 59 421 421 HOH HOH . D 4 HOH A 60 422 422 HOH HOH . D 4 HOH A 61 423 423 HOH HOH . D 4 HOH A 62 424 424 HOH HOH . D 4 HOH A 63 425 425 HOH HOH . D 4 HOH A 64 426 426 HOH HOH . D 4 HOH A 65 427 427 HOH HOH . D 4 HOH A 66 428 428 HOH HOH . D 4 HOH A 67 429 429 HOH HOH . D 4 HOH A 68 430 430 HOH HOH . D 4 HOH A 69 431 431 HOH HOH . D 4 HOH A 70 432 432 HOH HOH . D 4 HOH A 71 433 433 HOH HOH . D 4 HOH A 72 434 434 HOH HOH . D 4 HOH A 73 435 435 HOH HOH . D 4 HOH A 74 436 436 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . C 3 28.692 24.699 -6.633 1 33.33 ? C1 BOG 2095 A 1 HETATM 2 O O1 BOG . . . C 3 28.28 25.723 -7.552 1 32.08 ? O1 BOG 2095 A 1 HETATM 3 C C2 BOG . . . C 3 27.951 23.374 -6.729 1 34.62 ? C2 BOG 2095 A 1 HETATM 4 O O2 BOG . . . C 3 26.557 23.559 -6.434 1 38.57 ? O2 BOG 2095 A 1 HETATM 5 C C3 BOG . . . C 3 28.585 22.392 -5.717 1 33.96 ? C3 BOG 2095 A 1 HETATM 6 O O3 BOG . . . C 3 28.054 21.071 -5.688 1 31.94 ? O3 BOG 2095 A 1 HETATM 7 C C4 BOG . . . C 3 30.015 22.142 -6.105 1 33.37 ? C4 BOG 2095 A 1 HETATM 8 O O4 BOG . . . C 3 30.516 21.157 -5.177 1 37.27 ? O4 BOG 2095 A 1 HETATM 9 C C5 BOG . . . C 3 30.786 23.45 -6.069 1 33.66 ? C5 BOG 2095 A 1 HETATM 10 O O5 BOG . . . C 3 30.121 24.535 -6.785 1 35.6 ? O5 BOG 2095 A 1 HETATM 11 C C6 BOG . . . C 3 32.162 23.294 -6.716 1 33.51 ? C6 BOG 2095 A 1 HETATM 12 O O6 BOG . . . C 3 32.903 24.384 -6.173 1 34.49 ? O6 BOG 2095 A 1 HETATM 13 C C1' BOG . . . C 3 28.83 27.001 -7.208 1 28.01 ? C1' BOG 2095 A 1 HETATM 14 C C2' BOG . . . C 3 27.916 27.721 -6.208 1 26.13 ? C2' BOG 2095 A 1 HETATM 15 C C3' BOG . . . C 3 28.306 29.179 -6.094 1 25.81 ? C3' BOG 2095 A 1 HETATM 16 C C4' BOG . . . C 3 27.242 29.986 -5.341 1 28.17 ? C4' BOG 2095 A 1 HETATM 17 C C5' BOG . . . C 3 27.615 31.442 -5.279 1 29.9 ? C5' BOG 2095 A 1 HETATM 18 C C6' BOG . . . C 3 26.658 32.167 -4.319 1 33.15 ? C6' BOG 2095 A 1 HETATM 19 C C7' BOG . . . C 3 26.779 33.67 -4.406 1 33.93 ? C7' BOG 2095 A 1 HETATM 20 C C8' BOG . . . C 3 26.074 34.299 -3.201 1 37.51 ? C8' BOG 2095 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #