data_3P7B
#
_model_server_result.job_id            6uF2DGhJJqiun5cIPDc77A 
_model_server_result.datetime_utc      '2024-11-24 21:47:38' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p7b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":362}' 
#
_entry.id    3P7B 
#
_exptl.entry_id    3P7B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              464.58 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-{5-tert-butyl-3-[(5-oxo-1,4-diazepan-1-yl)carbonyl]thiophen-2-yl}-3-naphthalen-1-ylurea 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P7B 
_cell.length_a            68.4 
_cell.length_b            70.99 
_cell.length_c            75.55 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P7B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H28 N4 O3 S' 
_chem_comp.formula_weight    464.58 
_chem_comp.id                P7B 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-{5-tert-butyl-3-[(5-oxo-1,4-diazepan-1-yl)carbonyl]thiophen-2-yl}-3-naphthalen-1-ylurea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 S2 P7B sing 285 n y 
C1 C5 P7B doub 286 n y 
C1 C6 P7B sing 287 n n 
S2 C3 P7B sing 288 n y 
C3 C4 P7B doub 289 n y 
C3 N12 P7B sing 290 n n 
C4 C5 P7B sing 291 n y 
C4 C10 P7B sing 292 n n 
C6 C7 P7B sing 293 n n 
C6 C8 P7B sing 294 n n 
C6 C9 P7B sing 295 n n 
C10 O11 P7B doub 296 n n 
C10 N26 P7B sing 297 n n 
N12 C13 P7B sing 298 n n 
C13 O14 P7B doub 299 n n 
C13 N15 P7B sing 300 n n 
N15 C16 P7B sing 301 n n 
C16 C17 P7B doub 302 n y 
C16 C21 P7B sing 303 n y 
C17 C18 P7B sing 304 n y 
C18 C19 P7B doub 305 n y 
C19 C20 P7B sing 306 n y 
C20 C21 P7B doub 307 n y 
C20 C22 P7B sing 308 n y 
C21 C25 P7B sing 309 n y 
C22 C23 P7B doub 310 n y 
C23 C24 P7B sing 311 n y 
C24 C25 P7B doub 312 n y 
N26 C27 P7B sing 313 n n 
N26 C32 P7B sing 314 n n 
C27 C28 P7B sing 315 n n 
C28 N29 P7B sing 316 n n 
N29 C30 P7B sing 317 n n 
C30 C31 P7B sing 318 n n 
C30 O33 P7B doub 319 n n 
C31 C32 P7B sing 320 n n 
C5 H5 P7B sing 321 n n 
C7 H7 P7B sing 322 n n 
C7 H7A P7B sing 323 n n 
C7 H7B P7B sing 324 n n 
C8 H8 P7B sing 325 n n 
C8 H8A P7B sing 326 n n 
C8 H8B P7B sing 327 n n 
C9 H9 P7B sing 328 n n 
C9 H9A P7B sing 329 n n 
C9 H9B P7B sing 330 n n 
N12 HN12 P7B sing 331 n n 
N15 HN15 P7B sing 332 n n 
C17 H17 P7B sing 333 n n 
C18 H18 P7B sing 334 n n 
C19 H19 P7B sing 335 n n 
C22 H22 P7B sing 336 n n 
C23 H23 P7B sing 337 n n 
C24 H24 P7B sing 338 n n 
C25 H25 P7B sing 339 n n 
C27 H27 P7B sing 340 n n 
C27 H27A P7B sing 341 n n 
C28 H28 P7B sing 342 n n 
C28 H28A P7B sing 343 n n 
N29 HN29 P7B sing 344 n n 
C31 H31 P7B sing 345 n n 
C31 H31A P7B sing 346 n n 
C32 H32 P7B sing 347 n n 
C32 H32A P7B sing 348 n n 
#
_atom_sites.entry_id                     3P7B 
_atom_sites.fract_transf_matrix[1][1]    0.01462 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014086 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013236 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 P7B A 1 362 362 P7B P7B . 
C 3 BOG A 1 2095 2095 BOG BOG . 
D 4 HOH A 1 363 363 HOH HOH . 
D 4 HOH A 2 364 364 HOH HOH . 
D 4 HOH A 3 365 365 HOH HOH . 
D 4 HOH A 4 366 366 HOH HOH . 
D 4 HOH A 5 367 367 HOH HOH . 
D 4 HOH A 6 368 368 HOH HOH . 
D 4 HOH A 7 369 369 HOH HOH . 
D 4 HOH A 8 370 370 HOH HOH . 
D 4 HOH A 9 371 371 HOH HOH . 
D 4 HOH A 10 372 372 HOH HOH . 
D 4 HOH A 11 373 373 HOH HOH . 
D 4 HOH A 12 374 374 HOH HOH . 
D 4 HOH A 13 375 375 HOH HOH . 
D 4 HOH A 14 376 376 HOH HOH . 
D 4 HOH A 15 377 377 HOH HOH . 
D 4 HOH A 16 378 378 HOH HOH . 
D 4 HOH A 17 379 379 HOH HOH . 
D 4 HOH A 18 380 380 HOH HOH . 
D 4 HOH A 19 381 381 HOH HOH . 
D 4 HOH A 20 382 382 HOH HOH . 
D 4 HOH A 21 383 383 HOH HOH . 
D 4 HOH A 22 384 384 HOH HOH . 
D 4 HOH A 23 385 385 HOH HOH . 
D 4 HOH A 24 386 386 HOH HOH . 
D 4 HOH A 25 387 387 HOH HOH . 
D 4 HOH A 26 388 388 HOH HOH . 
D 4 HOH A 27 389 389 HOH HOH . 
D 4 HOH A 28 390 390 HOH HOH . 
D 4 HOH A 29 391 391 HOH HOH . 
D 4 HOH A 30 392 392 HOH HOH . 
D 4 HOH A 31 393 393 HOH HOH . 
D 4 HOH A 32 394 394 HOH HOH . 
D 4 HOH A 33 395 395 HOH HOH . 
D 4 HOH A 34 396 396 HOH HOH . 
D 4 HOH A 35 397 397 HOH HOH . 
D 4 HOH A 36 398 398 HOH HOH . 
D 4 HOH A 37 399 399 HOH HOH . 
D 4 HOH A 38 400 400 HOH HOH . 
D 4 HOH A 39 401 401 HOH HOH . 
D 4 HOH A 40 402 402 HOH HOH . 
D 4 HOH A 41 403 403 HOH HOH . 
D 4 HOH A 42 404 404 HOH HOH . 
D 4 HOH A 43 405 405 HOH HOH . 
D 4 HOH A 44 406 406 HOH HOH . 
D 4 HOH A 45 407 407 HOH HOH . 
D 4 HOH A 46 408 408 HOH HOH . 
D 4 HOH A 47 409 409 HOH HOH . 
D 4 HOH A 48 410 410 HOH HOH . 
D 4 HOH A 49 411 411 HOH HOH . 
D 4 HOH A 50 412 412 HOH HOH . 
D 4 HOH A 51 413 413 HOH HOH . 
D 4 HOH A 52 414 414 HOH HOH . 
D 4 HOH A 53 415 415 HOH HOH . 
D 4 HOH A 54 416 416 HOH HOH . 
D 4 HOH A 55 417 417 HOH HOH . 
D 4 HOH A 56 418 418 HOH HOH . 
D 4 HOH A 57 419 419 HOH HOH . 
D 4 HOH A 58 420 420 HOH HOH . 
D 4 HOH A 59 421 421 HOH HOH . 
D 4 HOH A 60 422 422 HOH HOH . 
D 4 HOH A 61 423 423 HOH HOH . 
D 4 HOH A 62 424 424 HOH HOH . 
D 4 HOH A 63 425 425 HOH HOH . 
D 4 HOH A 64 426 426 HOH HOH . 
D 4 HOH A 65 427 427 HOH HOH . 
D 4 HOH A 66 428 428 HOH HOH . 
D 4 HOH A 67 429 429 HOH HOH . 
D 4 HOH A 68 430 430 HOH HOH . 
D 4 HOH A 69 431 431 HOH HOH . 
D 4 HOH A 70 432 432 HOH HOH . 
D 4 HOH A 71 433 433 HOH HOH . 
D 4 HOH A 72 434 434 HOH HOH . 
D 4 HOH A 73 435 435 HOH HOH . 
D 4 HOH A 74 436 436 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 P7B . . . B 2 49.11 27.254 -18.119 1 17.77 ? C1 P7B 362 A 1 
HETATM 2 S S2 P7B . . . B 2 50.095 28.264 -19.098 1 17.05 ? S2 P7B 362 A 1 
HETATM 3 C C3 P7B . . . B 2 51.281 28.551 -17.846 1 21.6 ? C3 P7B 362 A 1 
HETATM 4 C C4 P7B . . . B 2 50.763 27.917 -16.699 1 21.63 ? C4 P7B 362 A 1 
HETATM 5 C C5 P7B . . . B 2 49.589 27.19 -16.81 1 18.84 ? C5 P7B 362 A 1 
HETATM 6 C C6 P7B . . . B 2 47.861 26.674 -18.73 1 19.24 ? C6 P7B 362 A 1 
HETATM 7 C C7 P7B . . . B 2 48.268 25.502 -19.586 1 19.04 ? C7 P7B 362 A 1 
HETATM 8 C C8 P7B . . . B 2 46.806 26.407 -17.676 1 20.74 ? C8 P7B 362 A 1 
HETATM 9 C C9 P7B . . . B 2 47.325 27.644 -19.765 1 17.48 ? C9 P7B 362 A 1 
HETATM 10 C C10 P7B . . . B 2 51.534 28.018 -15.434 1 28.97 ? C10 P7B 362 A 1 
HETATM 11 O O11 P7B . . . B 2 52.645 28.501 -15.511 1 32.18 ? O11 P7B 362 A 1 
HETATM 12 N N12 P7B . . . B 2 52.409 29.314 -17.928 1 18.65 ? N12 P7B 362 A 1 
HETATM 13 C C13 P7B . . . B 2 52.636 30.232 -18.903 1 18.84 ? C13 P7B 362 A 1 
HETATM 14 O O14 P7B . . . B 2 51.693 30.548 -19.768 1 20.12 ? O14 P7B 362 A 1 
HETATM 15 N N15 P7B . . . B 2 53.775 30.826 -19.004 1 20.15 ? N15 P7B 362 A 1 
HETATM 16 C C16 P7B . . . B 2 54.142 31.848 -19.841 1 22.17 ? C16 P7B 362 A 1 
HETATM 17 C C17 P7B . . . B 2 53.422 33.06 -19.666 1 20.5 ? C17 P7B 362 A 1 
HETATM 18 C C18 P7B . . . B 2 53.751 34.161 -20.477 1 20.85 ? C18 P7B 362 A 1 
HETATM 19 C C19 P7B . . . B 2 54.824 34.059 -21.354 1 22.84 ? C19 P7B 362 A 1 
HETATM 20 C C20 P7B . . . B 2 55.544 32.874 -21.549 1 21.84 ? C20 P7B 362 A 1 
HETATM 21 C C21 P7B . . . B 2 55.223 31.743 -20.771 1 21.87 ? C21 P7B 362 A 1 
HETATM 22 C C22 P7B . . . B 2 56.585 32.887 -22.52 1 23.7 ? C22 P7B 362 A 1 
HETATM 23 C C23 P7B . . . B 2 57.354 31.746 -22.702 1 19.73 ? C23 P7B 362 A 1 
HETATM 24 C C24 P7B . . . B 2 57.024 30.629 -21.937 1 21.44 ? C24 P7B 362 A 1 
HETATM 25 C C25 P7B . . . B 2 56.008 30.59 -20.964 1 22.96 ? C25 P7B 362 A 1 
HETATM 26 N N26 P7B . . . B 2 51.075 27.629 -14.229 1 30.92 ? N26 P7B 362 A 1 
HETATM 27 C C27 P7B . . . B 2 49.717 28.117 -13.908 1 34.97 ? C27 P7B 362 A 1 
HETATM 28 C C28 P7B . . . B 2 49.058 27.539 -12.652 1 39.64 ? C28 P7B 362 A 1 
HETATM 29 N N29 P7B . . . B 2 49.654 28.148 -11.435 1 43.35 ? N29 P7B 362 A 1 
HETATM 30 C C30 P7B . . . B 2 50.938 28.235 -10.965 1 39.93 ? C30 P7B 362 A 1 
HETATM 31 C C31 P7B . . . B 2 52.024 28.486 -12.021 1 37.22 ? C31 P7B 362 A 1 
HETATM 32 C C32 P7B . . . B 2 52.046 27.411 -13.122 1 33.65 ? C32 P7B 362 A 1 
HETATM 33 O O33 P7B . . . B 2 51.208 27.675 -9.882 1 36.79 ? O33 P7B 362 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           386 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           33 
#