data_3P7C
#
_model_server_result.job_id            mCwrkTftLD93OGrlCYot1Q 
_model_server_result.datetime_utc      '2024-10-20 20:38:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p7c 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":362}' 
#
_entry.id    3P7C 
#
_exptl.entry_id    3P7C 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              554.532 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1-[5-tert-butyl-3-({4-[2-(dimethylamino)ethyl]-5-oxo-1,4-diazepan-1-yl}carbonyl)thiophen-2-yl]-3-(2,3-dichlorophenyl)urea 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3P7C 
_cell.length_a            66.86 
_cell.length_b            70.77 
_cell.length_c            76.13 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P7C 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C25 H33 Cl2 N5 O3 S' 
_chem_comp.formula_weight    554.532 
_chem_comp.id                P7C 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1-[5-tert-butyl-3-({4-[2-(dimethylamino)ethyl]-5-oxo-1,4-diazepan-1-yl}carbonyl)thiophen-2-yl]-3-(2,3-dichlorophenyl)urea 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL1 C24 P7C sing 283 n n 
N2 C36 P7C sing 284 n n 
N2 C37 P7C sing 285 n n 
N2 C38 P7C sing 286 n n 
S2 C3 P7C sing 287 n y 
S2 C11 P7C sing 288 n y 
CL2 C20 P7C sing 289 n n 
C3 C4 P7C doub 290 n y 
C3 N12 P7C sing 291 n n 
C4 C5 P7C sing 292 n y 
C4 C10 P7C sing 293 n n 
C5 C11 P7C doub 294 n y 
C7 C14 P7C sing 295 n n 
C8 C14 P7C sing 296 n n 
C10 O11 P7C doub 297 n n 
C10 N26 P7C sing 298 n n 
C11 C14 P7C sing 299 n n 
N12 C13 P7C sing 300 n n 
C13 O14 P7C doub 301 n n 
C13 N15 P7C sing 302 n n 
C14 C22 P7C sing 303 n n 
N15 C16 P7C sing 304 n n 
C16 C17 P7C doub 305 n y 
C16 C24 P7C sing 306 n y 
C17 C23 P7C sing 307 n y 
C19 C20 P7C sing 308 n y 
C19 C23 P7C doub 309 n y 
C20 C24 P7C doub 310 n y 
C25 N26 P7C sing 311 n n 
C25 C28 P7C sing 312 n n 
C26 N29 P7C sing 313 n n 
C26 C33 P7C sing 314 n n 
C26 O33 P7C doub 315 n n 
N26 C34 P7C sing 316 n n 
C28 N29 P7C sing 317 n n 
N29 C35 P7C sing 318 n n 
C33 C34 P7C sing 319 n n 
C35 C36 P7C sing 320 n n 
C5 H5 P7C sing 321 n n 
C7 H7 P7C sing 322 n n 
C7 H7A P7C sing 323 n n 
C7 H7B P7C sing 324 n n 
C8 H8 P7C sing 325 n n 
C8 H8A P7C sing 326 n n 
C8 H8B P7C sing 327 n n 
N12 HN12 P7C sing 328 n n 
N15 HN15 P7C sing 329 n n 
C17 H17 P7C sing 330 n n 
C19 H19 P7C sing 331 n n 
C22 H22 P7C sing 332 n n 
C22 H22A P7C sing 333 n n 
C22 H22B P7C sing 334 n n 
C23 H23 P7C sing 335 n n 
C25 H25 P7C sing 336 n n 
C25 H25A P7C sing 337 n n 
C28 H28 P7C sing 338 n n 
C28 H28A P7C sing 339 n n 
C33 H33 P7C sing 340 n n 
C33 H33A P7C sing 341 n n 
C34 H34 P7C sing 342 n n 
C34 H34A P7C sing 343 n n 
C35 H35 P7C sing 344 n n 
C35 H35A P7C sing 345 n n 
C36 H36 P7C sing 346 n n 
C36 H36A P7C sing 347 n n 
C37 H37 P7C sing 348 n n 
C37 H37A P7C sing 349 n n 
C37 H37B P7C sing 350 n n 
C38 H38 P7C sing 351 n n 
C38 H38A P7C sing 352 n n 
C38 H38B P7C sing 353 n n 
#
_atom_sites.entry_id                     3P7C 
_atom_sites.fract_transf_matrix[1][1]    0.014957 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01413 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013135 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 BOG A 1 361 361 BOG BOG . 
C 3 P7C A 1 362 362 P7C P7C . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL1 P7C . . . C 3 55.666 30.267 -20.758 1 21.82 ? CL1 P7C 362 A 1 
HETATM 2 N N2 P7C . . . C 3 47.02 27.041 -10.42 1 48.87 ? N2 P7C 362 A 1 
HETATM 3 S S2 P7C . . . C 3 49.238 28.329 -19.576 1 17.58 ? S2 P7C 362 A 1 
HETATM 4 CL CL2 P7C . . . C 3 56.605 32.344 -22.908 1 27.6 ? CL2 P7C 362 A 1 
HETATM 5 C C3 P7C . . . C 3 50.389 28.568 -18.316 1 19.38 ? C3 P7C 362 A 1 
HETATM 6 C C4 P7C . . . C 3 49.91 27.815 -17.204 1 19.68 ? C4 P7C 362 A 1 
HETATM 7 C C5 P7C . . . C 3 48.769 27.069 -17.431 1 17.15 ? C5 P7C 362 A 1 
HETATM 8 C C7 P7C . . . C 3 47.368 25.55 -20.211 1 18.11 ? C7 P7C 362 A 1 
HETATM 9 C C8 P7C . . . C 3 45.998 26.389 -18.055 1 13.55 ? C8 P7C 362 A 1 
HETATM 10 C C10 P7C . . . C 3 50.716 27.772 -15.947 1 21.92 ? C10 P7C 362 A 1 
HETATM 11 C C11 P7C . . . C 3 48.253 27.243 -18.707 1 17.67 ? C11 P7C 362 A 1 
HETATM 12 O O11 P7C . . . C 3 51.908 27.755 -16.145 1 25.39 ? O11 P7C 362 A 1 
HETATM 13 N N12 P7C . . . C 3 51.481 29.374 -18.403 1 18.5 ? N12 P7C 362 A 1 
HETATM 14 C C13 P7C . . . C 3 51.769 30.249 -19.394 1 17.95 ? C13 P7C 362 A 1 
HETATM 15 C C14 P7C . . . C 3 46.965 26.612 -19.203 1 19.17 ? C14 P7C 362 A 1 
HETATM 16 O O14 P7C . . . C 3 50.796 30.518 -20.256 1 19.25 ? O14 P7C 362 A 1 
HETATM 17 N N15 P7C . . . C 3 52.955 30.809 -19.522 1 17.16 ? N15 P7C 362 A 1 
HETATM 18 C C16 P7C . . . C 3 53.401 31.727 -20.451 1 17.54 ? C16 P7C 362 A 1 
HETATM 19 C C17 P7C . . . C 3 52.642 32.845 -20.819 1 17.73 ? C17 P7C 362 A 1 
HETATM 20 C C19 P7C . . . C 3 54.308 33.635 -22.396 1 21.71 ? C19 P7C 362 A 1 
HETATM 21 C C20 P7C . . . C 3 55.092 32.535 -22.05 1 20.07 ? C20 P7C 362 A 1 
HETATM 22 C C22 P7C . . . C 3 46.147 27.536 -20.124 1 17.01 ? C22 P7C 362 A 1 
HETATM 23 C C23 P7C . . . C 3 53.07 33.792 -21.754 1 19.75 ? C23 P7C 362 A 1 
HETATM 24 C C24 P7C . . . C 3 54.628 31.618 -21.102 1 19.4 ? C24 P7C 362 A 1 
HETATM 25 C C25 P7C . . . C 3 48.965 28.113 -14.17 1 26.66 ? C25 P7C 362 A 1 
HETATM 26 C C26 P7C . . . C 3 50.589 28.111 -11.431 1 32.34 ? C26 P7C 362 A 1 
HETATM 27 N N26 P7C . . . C 3 50.273 27.677 -14.664 1 25.51 ? N26 P7C 362 A 1 
HETATM 28 C C28 P7C . . . C 3 49.142 29.156 -13.074 1 31.11 ? C28 P7C 362 A 1 
HETATM 29 N N29 P7C . . . C 3 49.33 28.555 -11.744 1 34.43 ? N29 P7C 362 A 1 
HETATM 30 C C33 P7C . . . C 3 51.619 27.888 -12.556 1 29.9 ? C33 P7C 362 A 1 
HETATM 31 O O33 P7C . . . C 3 50.816 27.68 -10.297 1 33.62 ? O33 P7C 362 A 1 
HETATM 32 C C34 P7C . . . C 3 51.174 26.978 -13.74 1 22.98 ? C34 P7C 362 A 1 
HETATM 33 C C35 P7C . . . C 3 48.447 29.131 -10.702 1 38.89 ? C35 P7C 362 A 1 
HETATM 34 C C36 P7C . . . C 3 47.038 28.542 -10.485 1 44.54 ? C36 P7C 362 A 1 
HETATM 35 C C37 P7C . . . C 3 47.198 26.478 -9.044 1 48.69 ? C37 P7C 362 A 1 
HETATM 36 C C38 P7C . . . C 3 45.967 26.341 -11.226 1 48.85 ? C38 P7C 362 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           36 
#