data_3P7J # _model_server_result.job_id Pp9ZfTjpnS_1ZdvP1eR2Jw _model_server_result.datetime_utc '2024-10-19 01:36:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p7j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3P7J # _exptl.entry_id 3P7J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P7J _cell.length_a 44.755 _cell.length_b 56.545 _cell.length_c 67.295 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P7J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 B,C,E 2 1 A,D 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 -22.3775 0 33.6475 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 116 n n C1 C2 GOL sing 117 n n C1 H11 GOL sing 118 n n C1 H12 GOL sing 119 n n O1 HO1 GOL sing 120 n n C2 O2 GOL sing 121 n n C2 C3 GOL sing 122 n n C2 H2 GOL sing 123 n n O2 HO2 GOL sing 124 n n C3 O3 GOL sing 125 n n C3 H31 GOL sing 126 n n C3 H32 GOL sing 127 n n O3 HO3 GOL sing 128 n n # _atom_sites.entry_id 3P7J _atom_sites.fract_transf_matrix[1][1] 0.022344 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01486 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL B 1 1 1 GOL GOL . D 3 HOH A 1 1 1 HOH HOH . D 3 HOH A 2 2 2 HOH HOH . D 3 HOH A 3 4 4 HOH HOH . D 3 HOH A 4 5 5 HOH HOH . D 3 HOH A 5 6 6 HOH HOH . D 3 HOH A 6 12 12 HOH HOH . D 3 HOH A 7 14 14 HOH HOH . D 3 HOH A 8 19 19 HOH HOH . D 3 HOH A 9 20 20 HOH HOH . D 3 HOH A 10 22 22 HOH HOH . D 3 HOH A 11 25 25 HOH HOH . D 3 HOH A 12 27 27 HOH HOH . D 3 HOH A 13 28 28 HOH HOH . D 3 HOH A 14 33 33 HOH HOH . D 3 HOH A 15 44 44 HOH HOH . D 3 HOH A 16 46 46 HOH HOH . D 3 HOH A 17 50 50 HOH HOH . D 3 HOH A 18 62 62 HOH HOH . E 3 HOH B 1 3 3 HOH HOH . E 3 HOH B 2 8 8 HOH HOH . E 3 HOH B 3 9 9 HOH HOH . E 3 HOH B 4 10 10 HOH HOH . E 3 HOH B 5 15 15 HOH HOH . E 3 HOH B 6 18 18 HOH HOH . E 3 HOH B 7 21 21 HOH HOH . E 3 HOH B 8 23 23 HOH HOH . E 3 HOH B 9 24 24 HOH HOH . E 3 HOH B 10 37 37 HOH HOH . E 3 HOH B 11 47 47 HOH HOH . E 3 HOH B 12 48 48 HOH HOH . E 3 HOH B 13 49 49 HOH HOH . E 3 HOH B 14 52 52 HOH HOH . E 3 HOH B 15 53 53 HOH HOH . E 3 HOH B 16 54 54 HOH HOH . E 3 HOH B 17 55 55 HOH HOH . E 3 HOH B 18 56 56 HOH HOH . E 3 HOH B 19 59 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -9.271 15.343 7.311 1 98.24 ? C1 GOL 1 B 1 HETATM 2 O O1 GOL . . . C 2 -10.207 15.695 6.312 1 97.63 ? O1 GOL 1 B 1 HETATM 3 C C2 GOL . . . C 2 -8.156 14.513 6.698 1 98.27 ? C2 GOL 1 B 1 HETATM 4 O O2 GOL . . . C 2 -7.482 13.773 7.7 1 97.41 ? O2 GOL 1 B 1 HETATM 5 C C3 GOL . . . C 2 -7.241 15.49 5.96 1 98.75 ? C3 GOL 1 B 1 HETATM 6 O O3 GOL . . . C 2 -7.099 15.184 4.584 1 98.8 ? O3 GOL 1 B 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #