data_3P7N # _model_server_result.job_id u2uBW8blzJ2eG0S59wCkFw _model_server_result.datetime_utc '2024-12-21 13:41:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p7n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":500}' # _entry.id 3P7N # _exptl.entry_id 3P7N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.57 _cell.angle_gamma 90 _cell.entry_id 3P7N _cell.length_a 37.044 _cell.length_b 81.595 _cell.length_c 65.478 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P7N _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 3P7N _atom_sites.fract_transf_matrix[1][1] 0.026995 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002159 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012256 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015321 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 500 500 FMN FMN . D 2 FMN B 1 500 500 FMN FMN . E 3 HOH A 1 223 1 HOH HOH . E 3 HOH A 2 224 2 HOH HOH . E 3 HOH A 3 225 4 HOH HOH . E 3 HOH A 4 226 6 HOH HOH . E 3 HOH A 5 227 7 HOH HOH . E 3 HOH A 6 228 9 HOH HOH . E 3 HOH A 7 229 10 HOH HOH . E 3 HOH A 8 230 11 HOH HOH . E 3 HOH A 9 231 13 HOH HOH . E 3 HOH A 10 232 14 HOH HOH . E 3 HOH A 11 233 18 HOH HOH . E 3 HOH A 12 234 20 HOH HOH . E 3 HOH A 13 235 27 HOH HOH . E 3 HOH A 14 236 28 HOH HOH . E 3 HOH A 15 237 29 HOH HOH . E 3 HOH A 16 238 31 HOH HOH . E 3 HOH A 17 239 32 HOH HOH . E 3 HOH A 18 240 35 HOH HOH . E 3 HOH A 19 241 36 HOH HOH . E 3 HOH A 20 242 38 HOH HOH . E 3 HOH A 21 243 44 HOH HOH . E 3 HOH A 22 244 47 HOH HOH . E 3 HOH A 23 245 48 HOH HOH . E 3 HOH A 24 246 49 HOH HOH . E 3 HOH A 25 247 53 HOH HOH . E 3 HOH A 26 248 56 HOH HOH . E 3 HOH A 27 249 58 HOH HOH . E 3 HOH A 28 250 62 HOH HOH . E 3 HOH A 29 251 65 HOH HOH . E 3 HOH A 30 252 66 HOH HOH . E 3 HOH A 31 253 67 HOH HOH . E 3 HOH A 32 254 69 HOH HOH . E 3 HOH A 33 255 70 HOH HOH . E 3 HOH A 34 256 72 HOH HOH . E 3 HOH A 35 257 75 HOH HOH . E 3 HOH A 36 258 76 HOH HOH . E 3 HOH A 37 259 77 HOH HOH . E 3 HOH A 38 260 78 HOH HOH . E 3 HOH A 39 261 82 HOH HOH . E 3 HOH A 40 262 84 HOH HOH . E 3 HOH A 41 263 85 HOH HOH . E 3 HOH A 42 264 88 HOH HOH . E 3 HOH A 43 265 90 HOH HOH . E 3 HOH A 44 266 91 HOH HOH . E 3 HOH A 45 267 93 HOH HOH . E 3 HOH A 46 268 94 HOH HOH . E 3 HOH A 47 269 95 HOH HOH . E 3 HOH A 48 270 96 HOH HOH . E 3 HOH A 49 271 97 HOH HOH . E 3 HOH A 50 272 98 HOH HOH . F 3 HOH B 1 223 5 HOH HOH . F 3 HOH B 2 224 12 HOH HOH . F 3 HOH B 3 225 15 HOH HOH . F 3 HOH B 4 226 16 HOH HOH . F 3 HOH B 5 227 17 HOH HOH . F 3 HOH B 6 228 19 HOH HOH . F 3 HOH B 7 229 21 HOH HOH . F 3 HOH B 8 230 22 HOH HOH . F 3 HOH B 9 231 23 HOH HOH . F 3 HOH B 10 232 24 HOH HOH . F 3 HOH B 11 233 25 HOH HOH . F 3 HOH B 12 234 26 HOH HOH . F 3 HOH B 13 235 30 HOH HOH . F 3 HOH B 14 236 33 HOH HOH . F 3 HOH B 15 237 34 HOH HOH . F 3 HOH B 16 238 37 HOH HOH . F 3 HOH B 17 239 39 HOH HOH . F 3 HOH B 18 240 40 HOH HOH . F 3 HOH B 19 241 41 HOH HOH . F 3 HOH B 20 242 42 HOH HOH . F 3 HOH B 21 243 43 HOH HOH . F 3 HOH B 22 244 46 HOH HOH . F 3 HOH B 23 245 50 HOH HOH . F 3 HOH B 24 246 51 HOH HOH . F 3 HOH B 25 247 54 HOH HOH . F 3 HOH B 26 248 55 HOH HOH . F 3 HOH B 27 249 57 HOH HOH . F 3 HOH B 28 250 60 HOH HOH . F 3 HOH B 29 251 61 HOH HOH . F 3 HOH B 30 252 63 HOH HOH . F 3 HOH B 31 253 64 HOH HOH . F 3 HOH B 32 254 68 HOH HOH . F 3 HOH B 33 255 73 HOH HOH . F 3 HOH B 34 256 74 HOH HOH . F 3 HOH B 35 257 79 HOH HOH . F 3 HOH B 36 258 81 HOH HOH . F 3 HOH B 37 259 83 HOH HOH . F 3 HOH B 38 260 86 HOH HOH . F 3 HOH B 39 261 87 HOH HOH . F 3 HOH B 40 262 89 HOH HOH . F 3 HOH B 41 263 92 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 5.875 -11.456 50.389 1 42.8 ? N1 FMN 500 B 1 HETATM 2 C C2 FMN . . . D 2 5.268 -12.334 51.261 1 48.39 ? C2 FMN 500 B 1 HETATM 3 O O2 FMN . . . D 2 4.259 -12.946 50.913 1 47.06 ? O2 FMN 500 B 1 HETATM 4 N N3 FMN . . . D 2 5.792 -12.524 52.524 1 43.41 ? N3 FMN 500 B 1 HETATM 5 C C4 FMN . . . D 2 6.924 -11.839 52.919 1 45.93 ? C4 FMN 500 B 1 HETATM 6 O O4 FMN . . . D 2 7.383 -12.016 54.046 1 50.59 ? O4 FMN 500 B 1 HETATM 7 C C4A FMN . . . D 2 7.541 -10.953 52.042 1 41.38 ? C4A FMN 500 B 1 HETATM 8 N N5 FMN . . . D 2 8.675 -10.257 52.419 1 38.5 ? N5 FMN 500 B 1 HETATM 9 C C5A FMN . . . D 2 9.274 -9.38 51.534 1 39.75 ? C5A FMN 500 B 1 HETATM 10 C C6 FMN . . . D 2 10.415 -8.675 51.901 1 40.56 ? C6 FMN 500 B 1 HETATM 11 C C7 FMN . . . D 2 11.009 -7.794 51.001 1 35.76 ? C7 FMN 500 B 1 HETATM 12 C C7M FMN . . . D 2 12.24 -7.035 51.401 1 36.34 ? C7M FMN 500 B 1 HETATM 13 C C8 FMN . . . D 2 10.465 -7.616 49.734 1 43.33 ? C8 FMN 500 B 1 HETATM 14 C C8M FMN . . . D 2 11.101 -6.669 48.759 1 38.85 ? C8M FMN 500 B 1 HETATM 15 C C9 FMN . . . D 2 9.327 -8.32 49.368 1 38.14 ? C9 FMN 500 B 1 HETATM 16 C C9A FMN . . . D 2 8.736 -9.198 50.267 1 38.42 ? C9A FMN 500 B 1 HETATM 17 N N10 FMN . . . D 2 7.606 -9.889 49.897 1 41.93 ? N10 FMN 500 B 1 HETATM 18 C C10 FMN . . . D 2 7.007 -10.767 50.774 1 44.67 ? C10 FMN 500 B 1 HETATM 19 C C1' FMN . . . D 2 7.032 -9.695 48.531 1 37.19 ? C1' FMN 500 B 1 HETATM 20 C C2' FMN . . . D 2 7.273 -10.979 47.753 1 40.4 ? C2' FMN 500 B 1 HETATM 21 O O2' FMN . . . D 2 8.624 -11.029 47.35 1 33.73 ? O2' FMN 500 B 1 HETATM 22 C C3' FMN . . . D 2 6.378 -11.034 46.53 1 49.09 ? C3' FMN 500 B 1 HETATM 23 O O3' FMN . . . D 2 5.995 -12.372 46.304 1 50.75 ? O3' FMN 500 B 1 HETATM 24 C C4' FMN . . . D 2 7.12 -10.482 45.322 1 54.07 ? C4' FMN 500 B 1 HETATM 25 O O4' FMN . . . D 2 7.703 -9.24 45.644 1 50.9 ? O4' FMN 500 B 1 HETATM 26 C C5' FMN . . . D 2 6.161 -10.279 44.165 1 63.84 ? C5' FMN 500 B 1 HETATM 27 O O5' FMN . . . D 2 5.248 -11.347 44.145 1 67.96 ? O5' FMN 500 B 1 HETATM 28 P P FMN . . . D 2 4.636 -11.77 42.728 1 94.71 ? P FMN 500 B 1 HETATM 29 O O1P FMN . . . D 2 5.726 -12.512 41.995 1 71.14 ? O1P FMN 500 B 1 HETATM 30 O O2P FMN . . . D 2 3.426 -12.656 42.905 1 74.75 ? O2P FMN 500 B 1 HETATM 31 O O3P FMN . . . D 2 4.262 -10.51 41.985 1 74.2 ? O3P FMN 500 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #