data_3P7Z # _model_server_result.job_id RMKU_AVplN5ACg6sAc739w _model_server_result.datetime_utc '2024-12-01 00:14:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1817}' # _entry.id 3P7Z # _exptl.entry_id 3P7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P7Z _cell.length_a 113.061 _cell.length_b 113.061 _cell.length_c 124.612 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 231 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 1771 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 231 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 1771 _struct_conn.ptnr2_symmetry 7_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.031 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 386 n n P1 O2 POP sing 387 n n P1 O3 POP sing 388 n n P1 O POP sing 389 n n O2 HO2 POP sing 390 n n O P2 POP sing 391 n n P2 O4 POP doub 392 n n P2 O5 POP sing 393 n n P2 O6 POP sing 394 n n O5 HO5 POP sing 395 n n # _atom_sites.entry_id 3P7Z _atom_sites.fract_transf_matrix[1][1] 0.008845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008845 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008025 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PEV A 1 1 1 PEV PEV . D 3 NA A 1 1817 1 NA NA . E 2 PEV B 1 1 1 PEV PEV . F 4 POP B 1 1817 1 POP POP . G 4 POP B 1 1818 1 POP POP . H 5 HOH A 1 3 3 HOH HOH . H 5 HOH A 2 6 6 HOH HOH . H 5 HOH A 3 8 8 HOH HOH . H 5 HOH A 4 9 9 HOH HOH . H 5 HOH A 5 12 12 HOH HOH . H 5 HOH A 6 13 13 HOH HOH . H 5 HOH A 7 16 16 HOH HOH . H 5 HOH A 8 22 22 HOH HOH . H 5 HOH A 9 23 23 HOH HOH . H 5 HOH A 10 29 29 HOH HOH . H 5 HOH A 11 35 35 HOH HOH . H 5 HOH A 12 39 39 HOH HOH . H 5 HOH A 13 40 40 HOH HOH . H 5 HOH A 14 41 41 HOH HOH . H 5 HOH A 15 43 43 HOH HOH . H 5 HOH A 16 44 44 HOH HOH . H 5 HOH A 17 46 46 HOH HOH . H 5 HOH A 18 49 49 HOH HOH . H 5 HOH A 19 50 50 HOH HOH . H 5 HOH A 20 51 51 HOH HOH . H 5 HOH A 21 54 54 HOH HOH . H 5 HOH A 22 56 56 HOH HOH . H 5 HOH A 23 57 57 HOH HOH . H 5 HOH A 24 62 62 HOH HOH . H 5 HOH A 25 64 64 HOH HOH . H 5 HOH A 26 68 68 HOH HOH . H 5 HOH A 27 69 69 HOH HOH . H 5 HOH A 28 74 74 HOH HOH . H 5 HOH A 29 75 75 HOH HOH . H 5 HOH A 30 77 77 HOH HOH . H 5 HOH A 31 80 80 HOH HOH . H 5 HOH A 32 89 89 HOH HOH . H 5 HOH A 33 90 90 HOH HOH . H 5 HOH A 34 91 91 HOH HOH . H 5 HOH A 35 93 93 HOH HOH . H 5 HOH A 36 101 101 HOH HOH . H 5 HOH A 37 104 104 HOH HOH . H 5 HOH A 38 105 105 HOH HOH . H 5 HOH A 39 107 107 HOH HOH . H 5 HOH A 40 109 109 HOH HOH . H 5 HOH A 41 111 111 HOH HOH . H 5 HOH A 42 112 112 HOH HOH . H 5 HOH A 43 117 117 HOH HOH . H 5 HOH A 44 119 119 HOH HOH . H 5 HOH A 45 126 126 HOH HOH . H 5 HOH A 46 127 127 HOH HOH . H 5 HOH A 47 129 129 HOH HOH . H 5 HOH A 48 133 133 HOH HOH . H 5 HOH A 49 135 135 HOH HOH . H 5 HOH A 50 139 139 HOH HOH . H 5 HOH A 51 144 144 HOH HOH . H 5 HOH A 52 148 148 HOH HOH . H 5 HOH A 53 150 150 HOH HOH . H 5 HOH A 54 152 152 HOH HOH . H 5 HOH A 55 155 155 HOH HOH . H 5 HOH A 56 156 156 HOH HOH . H 5 HOH A 57 157 157 HOH HOH . H 5 HOH A 58 158 158 HOH HOH . H 5 HOH A 59 159 159 HOH HOH . H 5 HOH A 60 162 162 HOH HOH . H 5 HOH A 61 163 163 HOH HOH . H 5 HOH A 62 164 164 HOH HOH . H 5 HOH A 63 165 165 HOH HOH . I 5 HOH B 1 2 2 HOH HOH . I 5 HOH B 2 4 4 HOH HOH . I 5 HOH B 3 5 5 HOH HOH . I 5 HOH B 4 7 7 HOH HOH . I 5 HOH B 5 10 10 HOH HOH . I 5 HOH B 6 11 11 HOH HOH . I 5 HOH B 7 14 14 HOH HOH . I 5 HOH B 8 15 15 HOH HOH . I 5 HOH B 9 17 17 HOH HOH . I 5 HOH B 10 18 18 HOH HOH . I 5 HOH B 11 19 19 HOH HOH . I 5 HOH B 12 20 20 HOH HOH . I 5 HOH B 13 21 21 HOH HOH . I 5 HOH B 14 24 24 HOH HOH . I 5 HOH B 15 25 25 HOH HOH . I 5 HOH B 16 26 26 HOH HOH . I 5 HOH B 17 27 27 HOH HOH . I 5 HOH B 18 28 28 HOH HOH . I 5 HOH B 19 30 30 HOH HOH . I 5 HOH B 20 31 31 HOH HOH . I 5 HOH B 21 32 32 HOH HOH . I 5 HOH B 22 33 33 HOH HOH . I 5 HOH B 23 34 34 HOH HOH . I 5 HOH B 24 36 36 HOH HOH . I 5 HOH B 25 37 37 HOH HOH . I 5 HOH B 26 38 38 HOH HOH . I 5 HOH B 27 42 42 HOH HOH . I 5 HOH B 28 45 45 HOH HOH . I 5 HOH B 29 47 47 HOH HOH . I 5 HOH B 30 48 48 HOH HOH . I 5 HOH B 31 52 52 HOH HOH . I 5 HOH B 32 53 53 HOH HOH . I 5 HOH B 33 55 55 HOH HOH . I 5 HOH B 34 58 58 HOH HOH . I 5 HOH B 35 59 59 HOH HOH . I 5 HOH B 36 60 60 HOH HOH . I 5 HOH B 37 61 61 HOH HOH . I 5 HOH B 38 63 63 HOH HOH . I 5 HOH B 39 65 65 HOH HOH . I 5 HOH B 40 66 66 HOH HOH . I 5 HOH B 41 67 67 HOH HOH . I 5 HOH B 42 70 70 HOH HOH . I 5 HOH B 43 71 71 HOH HOH . I 5 HOH B 44 72 72 HOH HOH . I 5 HOH B 45 73 73 HOH HOH . I 5 HOH B 46 76 76 HOH HOH . I 5 HOH B 47 78 78 HOH HOH . I 5 HOH B 48 79 79 HOH HOH . I 5 HOH B 49 81 81 HOH HOH . I 5 HOH B 50 82 82 HOH HOH . I 5 HOH B 51 83 83 HOH HOH . I 5 HOH B 52 84 84 HOH HOH . I 5 HOH B 53 85 85 HOH HOH . I 5 HOH B 54 86 86 HOH HOH . I 5 HOH B 55 87 87 HOH HOH . I 5 HOH B 56 88 88 HOH HOH . I 5 HOH B 57 92 92 HOH HOH . I 5 HOH B 58 94 94 HOH HOH . I 5 HOH B 59 95 95 HOH HOH . I 5 HOH B 60 96 96 HOH HOH . I 5 HOH B 61 97 97 HOH HOH . I 5 HOH B 62 98 98 HOH HOH . I 5 HOH B 63 99 99 HOH HOH . I 5 HOH B 64 100 100 HOH HOH . I 5 HOH B 65 102 102 HOH HOH . I 5 HOH B 66 103 103 HOH HOH . I 5 HOH B 67 106 106 HOH HOH . I 5 HOH B 68 108 108 HOH HOH . I 5 HOH B 69 110 110 HOH HOH . I 5 HOH B 70 113 113 HOH HOH . I 5 HOH B 71 114 114 HOH HOH . I 5 HOH B 72 115 115 HOH HOH . I 5 HOH B 73 116 116 HOH HOH . I 5 HOH B 74 118 118 HOH HOH . I 5 HOH B 75 120 120 HOH HOH . I 5 HOH B 76 121 121 HOH HOH . I 5 HOH B 77 122 122 HOH HOH . I 5 HOH B 78 123 123 HOH HOH . I 5 HOH B 79 124 124 HOH HOH . I 5 HOH B 80 125 125 HOH HOH . I 5 HOH B 81 128 128 HOH HOH . I 5 HOH B 82 130 130 HOH HOH . I 5 HOH B 83 131 131 HOH HOH . I 5 HOH B 84 132 132 HOH HOH . I 5 HOH B 85 134 134 HOH HOH . I 5 HOH B 86 136 136 HOH HOH . I 5 HOH B 87 137 137 HOH HOH . I 5 HOH B 88 138 138 HOH HOH . I 5 HOH B 89 140 140 HOH HOH . I 5 HOH B 90 141 141 HOH HOH . I 5 HOH B 91 142 142 HOH HOH . I 5 HOH B 92 143 143 HOH HOH . I 5 HOH B 93 145 145 HOH HOH . I 5 HOH B 94 146 146 HOH HOH . I 5 HOH B 95 147 147 HOH HOH . I 5 HOH B 96 149 149 HOH HOH . I 5 HOH B 97 151 151 HOH HOH . I 5 HOH B 98 153 153 HOH HOH . I 5 HOH B 99 154 154 HOH HOH . I 5 HOH B 100 160 160 HOH HOH . I 5 HOH B 101 161 161 HOH HOH . I 5 HOH B 102 166 166 HOH HOH . I 5 HOH B 103 1819 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . F 4 -21.015 -26.062 -25.214 1 87.54 ? P1 POP 1817 B 1 HETATM 2 O O1 POP . . . F 4 -20.98 -26.848 -23.923 1 83.7 ? O1 POP 1817 B 1 HETATM 3 O O2 POP . . . F 4 -22.394 -26.18 -25.82 1 82.79 ? O2 POP 1817 B 1 HETATM 4 O O3 POP . . . F 4 -19.988 -26.625 -26.169 1 90.53 ? O3 POP 1817 B 1 HETATM 5 O O POP . . . F 4 -20.697 -24.513 -24.896 1 206.01 ? O POP 1817 B 1 HETATM 6 P P2 POP . . . F 4 -19.632 -24.084 -23.764 1 102.5 ? P2 POP 1817 B 1 HETATM 7 O O4 POP . . . F 4 -18.308 -23.822 -24.44 1 99.91 ? O4 POP 1817 B 1 HETATM 8 O O5 POP . . . F 4 -20.114 -22.837 -23.055 1 94.37 ? O5 POP 1817 B 1 HETATM 9 O O6 POP . . . F 4 -19.431 -25.207 -22.773 1 108.87 ? O6 POP 1817 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 9 #