data_3P85 # _model_server_result.job_id ViWNwaG2DefmBlK_pRNpVg _model_server_result.datetime_utc '2024-11-23 11:57:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p85 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 3P85 # _exptl.entry_id 3P85 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 136.989 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CACODYLATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3P85 _cell.length_a 127.29 _cell.length_b 127.29 _cell.length_c 72.9 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P85 _symmetry.cell_setting ? _symmetry.Int_Tables_number 182 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 63.645 110.236374 0 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -63.645 110.236374 0 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/2 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 63.645 110.236374 36.45 5 'crystal symmetry operation' 11_555 -x+y,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 36.45 6 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/2 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -63.645 110.236374 36.45 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 67 A ASP 46 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.555 ? metalc ? metalc2 A OD1 ASP 67 A ASP 46 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc3 A OD2 ASP 69 A ASP 48 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc4 B CA CA . A CA 300 1_555 H O HOH . A HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc5 B CA CA . A CA 300 1_555 H O HOH . A HOH 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc6 B CA CA . A CA 300 1_555 H O HOH . A HOH 417 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc7 E CA CA . A CA 304 1_555 G O2 EDO . A EDO 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc8 E CA CA . A CA 304 1_555 G O1 EDO . A EDO 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc9 E CA CA . A CA 304 1_555 H O HOH . A HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? # _chem_comp.formula 'C2 H6 As O2 -1' _chem_comp.formula_weight 136.989 _chem_comp.id CAC _chem_comp.mon_nstd_flag . _chem_comp.name 'CACODYLATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms dimethylarsinate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag AS O1 CAC doub 113 n n AS O2 CAC sing 114 n n AS C1 CAC sing 115 n n AS C2 CAC sing 116 n n C1 H11 CAC sing 117 n n C1 H12 CAC sing 118 n n C1 H13 CAC sing 119 n n C2 H21 CAC sing 120 n n C2 H22 CAC sing 121 n n C2 H23 CAC sing 122 n n # _atom_sites.entry_id 3P85 _atom_sites.fract_transf_matrix[1][1] 0.007856 _atom_sites.fract_transf_matrix[1][2] 0.004536 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013717 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 300 300 CA CA . C 3 ACT A 1 301 301 ACT ACT . D 4 CAC A 1 302 302 CAC CAC . E 2 CA A 1 304 304 CA CA . F 5 1PE A 1 303 303 1PE 1PE . G 6 EDO A 1 305 305 EDO EDO . H 7 HOH A 1 306 306 HOH HOH . H 7 HOH A 2 307 307 HOH HOH . H 7 HOH A 3 308 308 HOH HOH . H 7 HOH A 4 309 309 HOH HOH . H 7 HOH A 5 310 310 HOH HOH . H 7 HOH A 6 311 311 HOH HOH . H 7 HOH A 7 312 312 HOH HOH . H 7 HOH A 8 313 313 HOH HOH . H 7 HOH A 9 314 314 HOH HOH . H 7 HOH A 10 315 315 HOH HOH . H 7 HOH A 11 316 316 HOH HOH . H 7 HOH A 12 317 317 HOH HOH . H 7 HOH A 13 318 318 HOH HOH . H 7 HOH A 14 319 319 HOH HOH . H 7 HOH A 15 320 320 HOH HOH . H 7 HOH A 16 321 321 HOH HOH . H 7 HOH A 17 322 322 HOH HOH . H 7 HOH A 18 323 323 HOH HOH . H 7 HOH A 19 324 324 HOH HOH . H 7 HOH A 20 325 325 HOH HOH . H 7 HOH A 21 326 326 HOH HOH . H 7 HOH A 22 327 327 HOH HOH . H 7 HOH A 23 328 328 HOH HOH . H 7 HOH A 24 329 329 HOH HOH . H 7 HOH A 25 330 330 HOH HOH . H 7 HOH A 26 331 331 HOH HOH . H 7 HOH A 27 332 332 HOH HOH . H 7 HOH A 28 333 333 HOH HOH . H 7 HOH A 29 334 334 HOH HOH . H 7 HOH A 30 335 335 HOH HOH . H 7 HOH A 31 336 336 HOH HOH . H 7 HOH A 32 337 337 HOH HOH . H 7 HOH A 33 338 338 HOH HOH . H 7 HOH A 34 339 339 HOH HOH . H 7 HOH A 35 340 340 HOH HOH . H 7 HOH A 36 341 341 HOH HOH . H 7 HOH A 37 342 342 HOH HOH . H 7 HOH A 38 343 343 HOH HOH . H 7 HOH A 39 344 344 HOH HOH . H 7 HOH A 40 345 345 HOH HOH . H 7 HOH A 41 346 346 HOH HOH . H 7 HOH A 42 347 347 HOH HOH . H 7 HOH A 43 348 348 HOH HOH . H 7 HOH A 44 349 349 HOH HOH . H 7 HOH A 45 350 350 HOH HOH . H 7 HOH A 46 351 351 HOH HOH . H 7 HOH A 47 352 352 HOH HOH . H 7 HOH A 48 353 353 HOH HOH . H 7 HOH A 49 354 354 HOH HOH . H 7 HOH A 50 355 355 HOH HOH . H 7 HOH A 51 356 356 HOH HOH . H 7 HOH A 52 357 357 HOH HOH . H 7 HOH A 53 358 358 HOH HOH . H 7 HOH A 54 359 359 HOH HOH . H 7 HOH A 55 360 360 HOH HOH . H 7 HOH A 56 361 361 HOH HOH . H 7 HOH A 57 362 362 HOH HOH . H 7 HOH A 58 363 363 HOH HOH . H 7 HOH A 59 364 364 HOH HOH . H 7 HOH A 60 365 365 HOH HOH . H 7 HOH A 61 366 366 HOH HOH . H 7 HOH A 62 367 367 HOH HOH . H 7 HOH A 63 368 368 HOH HOH . H 7 HOH A 64 369 369 HOH HOH . H 7 HOH A 65 370 370 HOH HOH . H 7 HOH A 66 371 371 HOH HOH . H 7 HOH A 67 372 372 HOH HOH . H 7 HOH A 68 373 373 HOH HOH . H 7 HOH A 69 374 374 HOH HOH . H 7 HOH A 70 375 375 HOH HOH . H 7 HOH A 71 376 376 HOH HOH . H 7 HOH A 72 377 377 HOH HOH . H 7 HOH A 73 378 378 HOH HOH . H 7 HOH A 74 379 379 HOH HOH . H 7 HOH A 75 380 380 HOH HOH . H 7 HOH A 76 381 381 HOH HOH . H 7 HOH A 77 382 382 HOH HOH . H 7 HOH A 78 383 383 HOH HOH . H 7 HOH A 79 384 384 HOH HOH . H 7 HOH A 80 385 385 HOH HOH . H 7 HOH A 81 386 386 HOH HOH . H 7 HOH A 82 387 387 HOH HOH . H 7 HOH A 83 388 388 HOH HOH . H 7 HOH A 84 389 389 HOH HOH . H 7 HOH A 85 390 390 HOH HOH . H 7 HOH A 86 391 391 HOH HOH . H 7 HOH A 87 392 392 HOH HOH . H 7 HOH A 88 393 393 HOH HOH . H 7 HOH A 89 394 394 HOH HOH . H 7 HOH A 90 395 395 HOH HOH . H 7 HOH A 91 396 396 HOH HOH . H 7 HOH A 92 397 397 HOH HOH . H 7 HOH A 93 398 398 HOH HOH . H 7 HOH A 94 399 399 HOH HOH . H 7 HOH A 95 400 400 HOH HOH . H 7 HOH A 96 401 401 HOH HOH . H 7 HOH A 97 402 402 HOH HOH . H 7 HOH A 98 403 403 HOH HOH . H 7 HOH A 99 404 404 HOH HOH . H 7 HOH A 100 405 405 HOH HOH . H 7 HOH A 101 406 406 HOH HOH . H 7 HOH A 102 407 407 HOH HOH . H 7 HOH A 103 408 408 HOH HOH . H 7 HOH A 104 409 409 HOH HOH . H 7 HOH A 105 410 410 HOH HOH . H 7 HOH A 106 411 411 HOH HOH . H 7 HOH A 107 412 412 HOH HOH . H 7 HOH A 108 413 413 HOH HOH . H 7 HOH A 109 414 414 HOH HOH . H 7 HOH A 110 415 415 HOH HOH . H 7 HOH A 111 416 416 HOH HOH . H 7 HOH A 112 417 417 HOH HOH . H 7 HOH A 113 418 418 HOH HOH . H 7 HOH A 114 419 419 HOH HOH . H 7 HOH A 115 420 420 HOH HOH . H 7 HOH A 116 421 421 HOH HOH . H 7 HOH A 117 422 422 HOH HOH . H 7 HOH A 118 423 423 HOH HOH . H 7 HOH A 119 424 424 HOH HOH . H 7 HOH A 120 425 425 HOH HOH . H 7 HOH A 121 426 426 HOH HOH . H 7 HOH A 122 427 427 HOH HOH . H 7 HOH A 123 428 428 HOH HOH . H 7 HOH A 124 429 429 HOH HOH . H 7 HOH A 125 430 430 HOH HOH . H 7 HOH A 126 431 431 HOH HOH . H 7 HOH A 127 432 432 HOH HOH . H 7 HOH A 128 433 433 HOH HOH . H 7 HOH A 129 434 434 HOH HOH . H 7 HOH A 130 435 435 HOH HOH . H 7 HOH A 131 436 436 HOH HOH . H 7 HOH A 132 437 437 HOH HOH . H 7 HOH A 133 438 438 HOH HOH . H 7 HOH A 134 439 439 HOH HOH . H 7 HOH A 135 440 440 HOH HOH . H 7 HOH A 136 441 441 HOH HOH . H 7 HOH A 137 442 442 HOH HOH . H 7 HOH A 138 443 443 HOH HOH . H 7 HOH A 139 444 444 HOH HOH . H 7 HOH A 140 445 445 HOH HOH . H 7 HOH A 141 446 446 HOH HOH . H 7 HOH A 142 447 447 HOH HOH . H 7 HOH A 143 448 448 HOH HOH . H 7 HOH A 144 449 449 HOH HOH . H 7 HOH A 145 450 450 HOH HOH . H 7 HOH A 146 451 451 HOH HOH . H 7 HOH A 147 452 452 HOH HOH . H 7 HOH A 148 453 453 HOH HOH . H 7 HOH A 149 454 454 HOH HOH . H 7 HOH A 150 455 455 HOH HOH . H 7 HOH A 151 456 456 HOH HOH . H 7 HOH A 152 457 457 HOH HOH . H 7 HOH A 153 458 458 HOH HOH . H 7 HOH A 154 459 459 HOH HOH . H 7 HOH A 155 460 460 HOH HOH . H 7 HOH A 156 461 461 HOH HOH . H 7 HOH A 157 462 462 HOH HOH . H 7 HOH A 158 463 463 HOH HOH . H 7 HOH A 159 464 464 HOH HOH . H 7 HOH A 160 465 465 HOH HOH . H 7 HOH A 161 466 466 HOH HOH . H 7 HOH A 162 467 467 HOH HOH . H 7 HOH A 163 468 468 HOH HOH . H 7 HOH A 164 469 469 HOH HOH . H 7 HOH A 165 470 470 HOH HOH . H 7 HOH A 166 471 471 HOH HOH . H 7 HOH A 167 472 472 HOH HOH . H 7 HOH A 168 473 473 HOH HOH . H 7 HOH A 169 474 474 HOH HOH . H 7 HOH A 170 475 475 HOH HOH . H 7 HOH A 171 476 476 HOH HOH . H 7 HOH A 172 477 477 HOH HOH . H 7 HOH A 173 478 478 HOH HOH . H 7 HOH A 174 479 479 HOH HOH . H 7 HOH A 175 480 480 HOH HOH . H 7 HOH A 176 481 481 HOH HOH . H 7 HOH A 177 482 482 HOH HOH . H 7 HOH A 178 483 483 HOH HOH . H 7 HOH A 179 484 484 HOH HOH . H 7 HOH A 180 485 485 HOH HOH . H 7 HOH A 181 486 486 HOH HOH . H 7 HOH A 182 487 487 HOH HOH . H 7 HOH A 183 488 488 HOH HOH . H 7 HOH A 184 489 489 HOH HOH . H 7 HOH A 185 490 490 HOH HOH . H 7 HOH A 186 491 491 HOH HOH . H 7 HOH A 187 492 492 HOH HOH . H 7 HOH A 188 493 493 HOH HOH . H 7 HOH A 189 494 494 HOH HOH . H 7 HOH A 190 495 495 HOH HOH . H 7 HOH A 191 496 496 HOH HOH . H 7 HOH A 192 497 497 HOH HOH . H 7 HOH A 193 498 498 HOH HOH . H 7 HOH A 194 499 499 HOH HOH . H 7 HOH A 195 500 500 HOH HOH . H 7 HOH A 196 501 501 HOH HOH . H 7 HOH A 197 502 502 HOH HOH . H 7 HOH A 198 503 503 HOH HOH . H 7 HOH A 199 504 504 HOH HOH . H 7 HOH A 200 505 505 HOH HOH . H 7 HOH A 201 506 506 HOH HOH . H 7 HOH A 202 507 507 HOH HOH . H 7 HOH A 203 508 508 HOH HOH . H 7 HOH A 204 509 509 HOH HOH . H 7 HOH A 205 510 510 HOH HOH . H 7 HOH A 206 511 511 HOH HOH . H 7 HOH A 207 512 512 HOH HOH . H 7 HOH A 208 513 513 HOH HOH . H 7 HOH A 209 514 514 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 AS AS CAC . . . D 4 -2.659 50.556 6.298 0.5 32.76 ? AS CAC 302 A 1 HETATM 2 O O1 CAC . . . D 4 -3.135 50.124 4.703 0.5 20.47 ? O1 CAC 302 A 1 HETATM 3 O O2 CAC . . . D 4 -2.551 52.275 6.525 0.5 15.85 ? O2 CAC 302 A 1 HETATM 4 C C1 CAC . . . D 4 -3.868 49.873 7.706 0.5 28.49 ? C1 CAC 302 A 1 HETATM 5 C C2 CAC . . . D 4 -0.831 49.909 6.592 0.5 28.91 ? C2 CAC 302 A 1 # _model_server_stats.io_time_ms 87 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 5 #