data_3P88 # _model_server_result.job_id RF6XKDjzAMjPYtioKMggvg _model_server_result.datetime_utc '2025-06-28 04:50:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":473}' # _entry.id 3P88 # _exptl.entry_id 3P88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P88 _cell.length_a 158.537 _cell.length_b 158.537 _cell.length_c 158.537 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 2 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA 24-meric 24 software_defined_assembly 2 PISA hexameric 6 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1 A,B,C,D,E,F 2 1,2,3,4,5,6,7,8,9,10,11,12 A,B,C,D,E,F 3 1,9,11 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_566 z,-x+1,-y+1 0 0 1 -1 0 0 0 -1 0 0 158.537 158.537 3 'crystal symmetry operation' 12_665 -y+1,-z+1,x 0 -1 0 0 0 -1 1 0 0 158.537 158.537 0 4 'crystal symmetry operation' 16_556 x,-y+1/2,-z+3/2 1 0 0 0 -1 0 0 0 -1 0 79.2685 237.8055 5 'crystal symmetry operation' 17_545 z,x-1/2,y+1/2 0 0 1 1 0 0 0 1 0 0 -79.2685 79.2685 6 'crystal symmetry operation' 22_646 -y+1,z-1/2,-x+3/2 0 -1 0 0 0 1 -1 0 0 158.537 -79.2685 237.8055 7 'crystal symmetry operation' 27_656 -x+3/2,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 237.8055 0 237.8055 8 'crystal symmetry operation' 31_665 -z+3/2,-x+1,y+1/2 0 0 -1 -1 0 0 0 1 0 237.8055 158.537 79.2685 9 'crystal symmetry operation' 35_566 y+1/2,-z+1,-x+3/2 0 1 0 0 0 -1 -1 0 0 79.2685 158.537 237.8055 10 'crystal symmetry operation' 38_655 -x+3/2,-y+1/2,z -1 0 0 0 -1 0 0 0 1 237.8055 79.2685 0 11 'crystal symmetry operation' 44_646 -z+3/2,x-1/2,-y+1 0 0 -1 1 0 0 0 -1 0 237.8055 -79.2685 158.537 12 'crystal symmetry operation' 45_545 y+1/2,z-1/2,x 0 1 0 0 0 1 1 0 0 79.2685 -79.2685 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 359 n n S O2 SO4 doub 360 n n S O3 SO4 sing 361 n n S O4 SO4 sing 362 n n # _atom_sites.entry_id 3P88 _atom_sites.fract_transf_matrix[1][1] 0.006308 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006308 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006308 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 P88 A 1 1 1 P88 P88 . D 4 SO4 A 1 473 1 SO4 SO4 . E 5 HOH A 1 2 2 HOH HOH . E 5 HOH A 2 4 4 HOH HOH . E 5 HOH A 3 5 5 HOH HOH . E 5 HOH A 4 6 6 HOH HOH . E 5 HOH A 5 7 7 HOH HOH . E 5 HOH A 6 9 9 HOH HOH . E 5 HOH A 7 10 10 HOH HOH . E 5 HOH A 8 11 11 HOH HOH . E 5 HOH A 9 12 12 HOH HOH . E 5 HOH A 10 13 13 HOH HOH . E 5 HOH A 11 14 14 HOH HOH . E 5 HOH A 12 474 1 HOH HOH . F 5 HOH B 1 3 3 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 4 112.762 36.502 140.151 1 72.05 ? S SO4 473 A 1 HETATM 2 O O1 SO4 . . . D 4 113.299 36.866 138.843 1 72.04 ? O1 SO4 473 A 1 HETATM 3 O O2 SO4 . . . D 4 111.416 37.044 140.288 1 72.33 ? O2 SO4 473 A 1 HETATM 4 O O3 SO4 . . . D 4 112.709 35.049 140.286 1 72.09 ? O3 SO4 473 A 1 HETATM 5 O O4 SO4 . . . D 4 113.608 37.063 141.201 1 72.36 ? O4 SO4 473 A 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 350 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 5 #