data_3P8H
#
_model_server_result.job_id            Crb9HHZQu_WhWnYdQyBxWA 
_model_server_result.datetime_utc      '2024-11-22 01:57:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p8h 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":600}' 
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_entry.id    3P8H 
#
_exptl.entry_id    3P8H 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              338.243 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            3-bromo-5-[(4-pyrrolidin-1-ylpiperidin-1-yl)carbonyl]pyridine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3P8H 
_cell.length_a            106.264 
_cell.length_b            106.264 
_cell.length_c            90.144 
_cell.Z_PDB               9 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3P8H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        145 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,K 1 1 
B,H,I,L 2 1 
C,J,M 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 D N N 
? 2 H N N 
#
_chem_comp.formula           'C15 H20 Br N3 O' 
_chem_comp.formula_weight    338.243 
_chem_comp.id                P8H 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              3-bromo-5-[(4-pyrrolidin-1-ylpiperidin-1-yl)carbonyl]pyridine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C2 C1 P8H doub 250 n y 
C1 C6 P8H sing 251 n y 
C1 BR8 P8H sing 252 n n 
N3 C2 P8H sing 253 n y 
C2 H2 P8H sing 254 n n 
N3 C4 P8H doub 255 n y 
C4 C5 P8H sing 256 n y 
C4 H4 P8H sing 257 n n 
C7 C5 P8H sing 258 n n 
C5 C6 P8H doub 259 n y 
C6 H6 P8H sing 260 n n 
N10 C7 P8H sing 261 n n 
C7 O9 P8H doub 262 n n 
C11 N10 P8H sing 263 n n 
C13 N10 P8H sing 264 n n 
C11 C12 P8H sing 265 n n 
C11 H11 P8H sing 266 n n 
C11 H11A P8H sing 267 n n 
C15 C12 P8H sing 268 n n 
C12 H12 P8H sing 269 n n 
C12 H12A P8H sing 270 n n 
C13 C14 P8H sing 271 n n 
C13 H13 P8H sing 272 n n 
C13 H13A P8H sing 273 n n 
C15 C14 P8H sing 274 n n 
C14 H14 P8H sing 275 n n 
C14 H14A P8H sing 276 n n 
C15 N16 P8H sing 277 n n 
C15 H15 P8H sing 278 n n 
C17 N16 P8H sing 279 n n 
N16 C20 P8H sing 280 n n 
C17 C18 P8H sing 281 n n 
C17 H17 P8H sing 282 n n 
C17 H17A P8H sing 283 n n 
C18 C19 P8H sing 284 n n 
C18 H18 P8H sing 285 n n 
C18 H18A P8H sing 286 n n 
C20 C19 P8H sing 287 n n 
C19 H19 P8H sing 288 n n 
C19 H19A P8H sing 289 n n 
C20 H20 P8H sing 290 n n 
C20 H20A P8H sing 291 n n 
#
_atom_sites.entry_id                     3P8H 
_atom_sites.fract_transf_matrix[1][1]    0.009411 
_atom_sites.fract_transf_matrix[1][2]    0.005433 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010866 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011093 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 P8H A 1 600 600 P8H P8H . 
E 3 SO4 A 1 610 610 SO4 SO4 . 
F 4 GOL A 1 620 620 GOL GOL . 
G 4 GOL A 1 621 621 GOL GOL . 
H 2 P8H B 1 600 600 P8H P8H . 
I 3 SO4 B 1 610 610 SO4 SO4 . 
J 3 SO4 C 1 610 610 SO4 SO4 . 
K 5 HOH A 1 1 1 HOH HOH . 
K 5 HOH A 2 2 2 HOH HOH . 
K 5 HOH A 3 3 3 HOH HOH . 
K 5 HOH A 4 4 4 HOH HOH . 
K 5 HOH A 5 8 8 HOH HOH . 
K 5 HOH A 6 9 9 HOH HOH . 
K 5 HOH A 7 10 10 HOH HOH . 
K 5 HOH A 8 11 11 HOH HOH . 
K 5 HOH A 9 12 12 HOH HOH . 
K 5 HOH A 10 13 13 HOH HOH . 
K 5 HOH A 11 14 14 HOH HOH . 
K 5 HOH A 12 15 15 HOH HOH . 
K 5 HOH A 13 16 16 HOH HOH . 
K 5 HOH A 14 17 17 HOH HOH . 
K 5 HOH A 15 18 18 HOH HOH . 
K 5 HOH A 16 19 19 HOH HOH . 
K 5 HOH A 17 20 20 HOH HOH . 
K 5 HOH A 18 21 21 HOH HOH . 
K 5 HOH A 19 22 22 HOH HOH . 
K 5 HOH A 20 23 23 HOH HOH . 
K 5 HOH A 21 24 24 HOH HOH . 
K 5 HOH A 22 25 25 HOH HOH . 
K 5 HOH A 23 26 26 HOH HOH . 
K 5 HOH A 24 27 27 HOH HOH . 
K 5 HOH A 25 28 28 HOH HOH . 
K 5 HOH A 26 29 29 HOH HOH . 
L 5 HOH B 1 5 5 HOH HOH . 
L 5 HOH B 2 7 7 HOH HOH . 
L 5 HOH B 3 30 30 HOH HOH . 
M 5 HOH C 1 6 6 HOH HOH . 
M 5 HOH C 2 31 31 HOH HOH . 
M 5 HOH C 3 32 32 HOH HOH . 
M 5 HOH C 4 33 33 HOH HOH . 
M 5 HOH C 5 34 34 HOH HOH . 
M 5 HOH C 6 35 35 HOH HOH . 
M 5 HOH C 7 36 36 HOH HOH . 
M 5 HOH C 8 37 37 HOH HOH . 
M 5 HOH C 9 38 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 P8H . . . D 2 18.421 27.882 -12.639 1 51.33 ? C1 P8H 600 A 1 
HETATM 2 C C2 P8H . . . D 2 17.337 28.599 -13.127 1 55.58 ? C2 P8H 600 A 1 
HETATM 3 N N3 P8H . . . D 2 17.494 29.839 -13.56 1 57.08 ? N3 P8H 600 A 1 
HETATM 4 C C4 P8H . . . D 2 18.682 30.424 -13.547 1 54.09 ? C4 P8H 600 A 1 
HETATM 5 C C5 P8H . . . D 2 19.812 29.753 -13.076 1 47.13 ? C5 P8H 600 A 1 
HETATM 6 C C6 P8H . . . D 2 19.689 28.454 -12.601 1 47.04 ? C6 P8H 600 A 1 
HETATM 7 C C7 P8H . . . D 2 21.139 30.503 -13.097 1 44.15 ? C7 P8H 600 A 1 
HETATM 8 BR BR8 P8H . . . D 2 18.137 26.124 -12.017 1 66.69 ? BR8 P8H 600 A 1 
HETATM 9 O O9 P8H . . . D 2 21.276 31.474 -12.359 1 46.59 ? O9 P8H 600 A 1 
HETATM 10 N N10 P8H . . . D 2 22.107 30.219 -13.978 1 41.14 ? N10 P8H 600 A 1 
HETATM 11 C C11 P8H . . . D 2 22.014 29.059 -14.885 1 39.56 ? C11 P8H 600 A 1 
HETATM 12 C C12 P8H . . . D 2 23.139 28.117 -14.436 1 45.14 ? C12 P8H 600 A 1 
HETATM 13 C C13 P8H . . . D 2 23.385 30.994 -13.98 1 39.96 ? C13 P8H 600 A 1 
HETATM 14 C C14 P8H . . . D 2 24.561 30.047 -13.654 1 41.86 ? C14 P8H 600 A 1 
HETATM 15 C C15 P8H . . . D 2 24.525 28.793 -14.534 1 41.04 ? C15 P8H 600 A 1 
HETATM 16 N N16 P8H . . . D 2 25.573 27.843 -14.149 1 43.83 ? N16 P8H 600 A 1 
HETATM 17 C C17 P8H . . . D 2 25.736 26.783 -15.169 1 39.02 ? C17 P8H 600 A 1 
HETATM 18 C C18 P8H . . . D 2 27.185 26.287 -14.997 1 38.36 ? C18 P8H 600 A 1 
HETATM 19 C C19 P8H . . . D 2 27.829 27.276 -14.029 1 39.61 ? C19 P8H 600 A 1 
HETATM 20 C C20 P8H . . . D 2 26.9 28.481 -14.08 1 42.13 ? C20 P8H 600 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
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