data_3P8N # _model_server_result.job_id 0A5rcfwlNRyYGitir16qwg _model_server_result.datetime_utc '2024-11-16 08:20:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p8n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":187}' # _entry.id 3P8N # _exptl.entry_id 3P8N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3P8N _cell.length_a 94.874 _cell.length_b 94.874 _cell.length_c 81.88 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P8N _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 47 1_555 A SG CYS 52 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf2 B SG CYS 47 B CYS 47 1_555 B SG CYS 52 B CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc1 A O ALA 5 A ALA 5 1_555 E NA NA . A NA 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc2 A O ALA 111 A ALA 111 1_555 E NA NA . A NA 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc3 E NA NA . A NA 187 1_555 I O HOH . A HOH 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc4 E NA NA . A NA 187 1_555 I O HOH . A HOH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.994 ? metalc ? metalc5 E NA NA . A NA 187 1_555 I O HOH . A HOH 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc6 E NA NA . A NA 187 1_555 I O HOH . A HOH 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.75 ? metalc ? metalc7 B O ALA 5 B ALA 5 1_555 G NA NA . B NA 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? metalc ? metalc8 B O ALA 111 B ALA 111 1_555 G NA NA . B NA 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc9 G NA NA . B NA 187 1_555 J O HOH . B HOH 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc10 G NA NA . B NA 187 1_555 J O HOH . B HOH 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc11 G NA NA . B NA 187 1_555 J O HOH . B HOH 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc12 G NA NA . B NA 187 1_555 J O HOH . B HOH 223 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.611 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3P8N _atom_sites.fract_transf_matrix[1][1] 0.01054 _atom_sites.fract_transf_matrix[1][2] 0.006085 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012171 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012213 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 187 1 NA NA . F 4 L4T A 1 188 1 L4T L4T . G 3 NA B 1 187 2 NA NA . H 4 L4T B 1 188 2 L4T L4T . I 5 HOH A 1 189 5 HOH HOH . I 5 HOH A 2 190 7 HOH HOH . I 5 HOH A 3 191 8 HOH HOH . I 5 HOH A 4 192 9 HOH HOH . I 5 HOH A 5 193 10 HOH HOH . I 5 HOH A 6 194 13 HOH HOH . I 5 HOH A 7 195 16 HOH HOH . I 5 HOH A 8 196 18 HOH HOH . I 5 HOH A 9 197 20 HOH HOH . I 5 HOH A 10 198 23 HOH HOH . I 5 HOH A 11 199 24 HOH HOH . I 5 HOH A 12 200 27 HOH HOH . I 5 HOH A 13 201 29 HOH HOH . I 5 HOH A 14 202 32 HOH HOH . I 5 HOH A 15 203 35 HOH HOH . I 5 HOH A 16 204 37 HOH HOH . I 5 HOH A 17 205 39 HOH HOH . I 5 HOH A 18 206 40 HOH HOH . I 5 HOH A 19 207 41 HOH HOH . I 5 HOH A 20 208 42 HOH HOH . I 5 HOH A 21 209 43 HOH HOH . I 5 HOH A 22 210 46 HOH HOH . I 5 HOH A 23 211 48 HOH HOH . I 5 HOH A 24 212 50 HOH HOH . I 5 HOH A 25 213 51 HOH HOH . I 5 HOH A 26 214 54 HOH HOH . I 5 HOH A 27 215 56 HOH HOH . I 5 HOH A 28 216 57 HOH HOH . I 5 HOH A 29 217 62 HOH HOH . I 5 HOH A 30 218 64 HOH HOH . I 5 HOH A 31 219 65 HOH HOH . I 5 HOH A 32 220 68 HOH HOH . I 5 HOH A 33 221 72 HOH HOH . I 5 HOH A 34 222 74 HOH HOH . I 5 HOH A 35 223 75 HOH HOH . I 5 HOH A 36 224 78 HOH HOH . I 5 HOH A 37 225 79 HOH HOH . I 5 HOH A 38 226 80 HOH HOH . I 5 HOH A 39 227 81 HOH HOH . I 5 HOH A 40 228 86 HOH HOH . I 5 HOH A 41 229 87 HOH HOH . I 5 HOH A 42 230 88 HOH HOH . I 5 HOH A 43 231 90 HOH HOH . I 5 HOH A 44 232 95 HOH HOH . I 5 HOH A 45 233 97 HOH HOH . I 5 HOH A 46 234 98 HOH HOH . I 5 HOH A 47 235 99 HOH HOH . I 5 HOH A 48 236 101 HOH HOH . I 5 HOH A 49 237 103 HOH HOH . I 5 HOH A 50 238 104 HOH HOH . I 5 HOH A 51 239 108 HOH HOH . I 5 HOH A 52 240 112 HOH HOH . I 5 HOH A 53 241 113 HOH HOH . I 5 HOH A 54 242 115 HOH HOH . I 5 HOH A 55 243 118 HOH HOH . I 5 HOH A 56 244 119 HOH HOH . I 5 HOH A 57 245 123 HOH HOH . I 5 HOH A 58 246 127 HOH HOH . I 5 HOH A 59 247 134 HOH HOH . I 5 HOH A 60 248 136 HOH HOH . I 5 HOH A 61 249 137 HOH HOH . I 5 HOH A 62 250 142 HOH HOH . I 5 HOH A 63 251 143 HOH HOH . I 5 HOH A 64 252 144 HOH HOH . I 5 HOH A 65 253 145 HOH HOH . I 5 HOH A 66 254 146 HOH HOH . I 5 HOH A 67 255 149 HOH HOH . I 5 HOH A 68 256 152 HOH HOH . I 5 HOH A 69 257 157 HOH HOH . I 5 HOH A 70 258 159 HOH HOH . I 5 HOH A 71 259 160 HOH HOH . I 5 HOH A 72 260 161 HOH HOH . I 5 HOH A 73 261 163 HOH HOH . I 5 HOH A 74 262 165 HOH HOH . I 5 HOH A 75 263 167 HOH HOH . I 5 HOH A 76 264 169 HOH HOH . I 5 HOH A 77 265 170 HOH HOH . I 5 HOH A 78 266 171 HOH HOH . I 5 HOH A 79 267 173 HOH HOH . I 5 HOH A 80 268 174 HOH HOH . I 5 HOH A 81 269 176 HOH HOH . J 5 HOH B 1 189 1 HOH HOH . J 5 HOH B 2 190 2 HOH HOH . J 5 HOH B 3 191 3 HOH HOH . J 5 HOH B 4 192 4 HOH HOH . J 5 HOH B 5 193 6 HOH HOH . J 5 HOH B 6 194 11 HOH HOH . J 5 HOH B 7 195 12 HOH HOH . J 5 HOH B 8 196 14 HOH HOH . J 5 HOH B 9 197 15 HOH HOH . J 5 HOH B 10 198 17 HOH HOH . J 5 HOH B 11 199 19 HOH HOH . J 5 HOH B 12 200 21 HOH HOH . J 5 HOH B 13 201 22 HOH HOH . J 5 HOH B 14 202 25 HOH HOH . J 5 HOH B 15 203 26 HOH HOH . J 5 HOH B 16 204 28 HOH HOH . J 5 HOH B 17 205 30 HOH HOH . J 5 HOH B 18 206 31 HOH HOH . J 5 HOH B 19 207 33 HOH HOH . J 5 HOH B 20 208 34 HOH HOH . J 5 HOH B 21 209 36 HOH HOH . J 5 HOH B 22 210 38 HOH HOH . J 5 HOH B 23 211 44 HOH HOH . J 5 HOH B 24 212 45 HOH HOH . J 5 HOH B 25 213 47 HOH HOH . J 5 HOH B 26 214 49 HOH HOH . J 5 HOH B 27 215 52 HOH HOH . J 5 HOH B 28 216 53 HOH HOH . J 5 HOH B 29 217 55 HOH HOH . J 5 HOH B 30 218 58 HOH HOH . J 5 HOH B 31 219 59 HOH HOH . J 5 HOH B 32 220 61 HOH HOH . J 5 HOH B 33 221 63 HOH HOH . J 5 HOH B 34 222 67 HOH HOH . J 5 HOH B 35 223 69 HOH HOH . J 5 HOH B 36 224 70 HOH HOH . J 5 HOH B 37 225 71 HOH HOH . J 5 HOH B 38 226 73 HOH HOH . J 5 HOH B 39 227 77 HOH HOH . J 5 HOH B 40 228 82 HOH HOH . J 5 HOH B 41 229 83 HOH HOH . J 5 HOH B 42 230 84 HOH HOH . J 5 HOH B 43 231 85 HOH HOH . J 5 HOH B 44 232 89 HOH HOH . J 5 HOH B 45 233 91 HOH HOH . J 5 HOH B 46 234 92 HOH HOH . J 5 HOH B 47 235 93 HOH HOH . J 5 HOH B 48 236 94 HOH HOH . J 5 HOH B 49 237 96 HOH HOH . J 5 HOH B 50 238 100 HOH HOH . J 5 HOH B 51 239 102 HOH HOH . J 5 HOH B 52 240 105 HOH HOH . J 5 HOH B 53 241 106 HOH HOH . J 5 HOH B 54 242 107 HOH HOH . J 5 HOH B 55 243 109 HOH HOH . J 5 HOH B 56 244 110 HOH HOH . J 5 HOH B 57 245 111 HOH HOH . J 5 HOH B 58 246 116 HOH HOH . J 5 HOH B 59 247 117 HOH HOH . J 5 HOH B 60 248 120 HOH HOH . J 5 HOH B 61 249 121 HOH HOH . J 5 HOH B 62 250 122 HOH HOH . J 5 HOH B 63 251 124 HOH HOH . J 5 HOH B 64 252 125 HOH HOH . J 5 HOH B 65 253 126 HOH HOH . J 5 HOH B 66 254 128 HOH HOH . J 5 HOH B 67 255 129 HOH HOH . J 5 HOH B 68 256 130 HOH HOH . J 5 HOH B 69 257 131 HOH HOH . J 5 HOH B 70 258 133 HOH HOH . J 5 HOH B 71 259 135 HOH HOH . J 5 HOH B 72 260 138 HOH HOH . J 5 HOH B 73 261 139 HOH HOH . J 5 HOH B 74 262 140 HOH HOH . J 5 HOH B 75 263 141 HOH HOH . J 5 HOH B 76 264 147 HOH HOH . J 5 HOH B 77 265 150 HOH HOH . J 5 HOH B 78 266 153 HOH HOH . J 5 HOH B 79 267 154 HOH HOH . J 5 HOH B 80 268 155 HOH HOH . J 5 HOH B 81 269 156 HOH HOH . J 5 HOH B 82 270 158 HOH HOH . J 5 HOH B 83 271 162 HOH HOH . J 5 HOH B 84 272 164 HOH HOH . J 5 HOH B 85 273 168 HOH HOH . J 5 HOH B 86 274 172 HOH HOH . J 5 HOH B 87 275 175 HOH HOH . K 5 HOH C 1 76 76 HOH HOH . K 5 HOH C 2 114 114 HOH HOH . K 5 HOH C 3 132 132 HOH HOH . K 5 HOH C 4 148 148 HOH HOH . K 5 HOH C 5 166 166 HOH HOH . L 5 HOH D 1 60 60 HOH HOH . L 5 HOH D 2 66 66 HOH HOH . L 5 HOH D 3 151 151 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 71.845 _atom_site.Cartn_y 27.094 _atom_site.Cartn_z 5.8 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 187 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #