data_3P8O # _model_server_result.job_id '_GMB_cMB2KXNRsEvdmjT0w' _model_server_result.datetime_utc '2024-11-22 07:40:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":187}' # _entry.id 3P8O # _exptl.entry_id 3P8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3P8O _cell.length_a 94.965 _cell.length_b 94.965 _cell.length_c 81.8 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 97 A CYS 97 1_555 A SG CYS 145 A CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 B SG CYS 97 B CYS 97 1_555 B SG CYS 145 B CYS 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc1 A O ALA 5 A ALA 5 1_555 E NA NA . A NA 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc2 A O ALA 111 A ALA 111 1_555 E NA NA . A NA 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc3 E NA NA . A NA 187 1_555 I O HOH . A HOH 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc4 E NA NA . A NA 187 1_555 I O HOH . A HOH 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc5 B O ALA 5 B ALA 5 1_555 G NA NA . B NA 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc6 B O ALA 111 B ALA 111 1_555 G NA NA . B NA 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc7 G NA NA . B NA 187 1_555 J O HOH . B HOH 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc8 G NA NA . B NA 187 1_555 J O HOH . B HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3P8O _atom_sites.fract_transf_matrix[1][1] 0.01053 _atom_sites.fract_transf_matrix[1][2] 0.00608 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012159 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NA A 1 187 1 NA NA . F 4 L5T A 1 188 1 L5T L5T . G 3 NA B 1 187 2 NA NA . H 4 L5T B 1 188 2 L5T L5T . I 5 HOH A 1 189 1 HOH HOH . I 5 HOH A 2 190 5 HOH HOH . I 5 HOH A 3 191 9 HOH HOH . I 5 HOH A 4 192 10 HOH HOH . I 5 HOH A 5 193 15 HOH HOH . I 5 HOH A 6 194 17 HOH HOH . I 5 HOH A 7 195 18 HOH HOH . I 5 HOH A 8 196 22 HOH HOH . I 5 HOH A 9 197 24 HOH HOH . I 5 HOH A 10 198 26 HOH HOH . I 5 HOH A 11 199 27 HOH HOH . I 5 HOH A 12 200 28 HOH HOH . I 5 HOH A 13 201 29 HOH HOH . I 5 HOH A 14 202 30 HOH HOH . I 5 HOH A 15 203 31 HOH HOH . I 5 HOH A 16 204 33 HOH HOH . I 5 HOH A 17 205 37 HOH HOH . I 5 HOH A 18 206 39 HOH HOH . I 5 HOH A 19 207 40 HOH HOH . I 5 HOH A 20 208 41 HOH HOH . I 5 HOH A 21 209 55 HOH HOH . I 5 HOH A 22 210 57 HOH HOH . I 5 HOH A 23 211 59 HOH HOH . I 5 HOH A 24 212 60 HOH HOH . I 5 HOH A 25 213 61 HOH HOH . I 5 HOH A 26 214 62 HOH HOH . I 5 HOH A 27 215 63 HOH HOH . I 5 HOH A 28 216 64 HOH HOH . I 5 HOH A 29 217 65 HOH HOH . I 5 HOH A 30 218 66 HOH HOH . J 5 HOH B 1 189 2 HOH HOH . J 5 HOH B 2 190 3 HOH HOH . J 5 HOH B 3 191 4 HOH HOH . J 5 HOH B 4 192 6 HOH HOH . J 5 HOH B 5 193 7 HOH HOH . J 5 HOH B 6 194 8 HOH HOH . J 5 HOH B 7 195 11 HOH HOH . J 5 HOH B 8 196 12 HOH HOH . J 5 HOH B 9 197 13 HOH HOH . J 5 HOH B 10 198 14 HOH HOH . J 5 HOH B 11 199 16 HOH HOH . J 5 HOH B 12 200 19 HOH HOH . J 5 HOH B 13 201 20 HOH HOH . J 5 HOH B 14 202 21 HOH HOH . J 5 HOH B 15 203 23 HOH HOH . J 5 HOH B 16 204 25 HOH HOH . J 5 HOH B 17 205 32 HOH HOH . J 5 HOH B 18 206 34 HOH HOH . J 5 HOH B 19 207 35 HOH HOH . J 5 HOH B 20 208 36 HOH HOH . J 5 HOH B 21 209 38 HOH HOH . J 5 HOH B 22 210 42 HOH HOH . J 5 HOH B 23 211 43 HOH HOH . J 5 HOH B 24 212 44 HOH HOH . J 5 HOH B 25 213 45 HOH HOH . J 5 HOH B 26 214 46 HOH HOH . J 5 HOH B 27 215 47 HOH HOH . J 5 HOH B 28 216 48 HOH HOH . J 5 HOH B 29 217 49 HOH HOH . J 5 HOH B 30 218 50 HOH HOH . J 5 HOH B 31 219 52 HOH HOH . J 5 HOH B 32 220 53 HOH HOH . J 5 HOH B 33 221 54 HOH HOH . J 5 HOH B 34 222 56 HOH HOH . J 5 HOH B 35 223 58 HOH HOH . K 5 HOH C 1 51 51 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x 72.003 _atom_site.Cartn_y 26.948 _atom_site.Cartn_z 5.303 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 50.98 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 187 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #