data_3P8P
#
_model_server_result.job_id            dQmmsViAEsYZfF36DhdraA 
_model_server_result.datetime_utc      '2024-11-16 06:30:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p8p 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":286}' 
#
_entry.id    3P8P 
#
_exptl.entry_id    3P8P 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              215.293 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~5~-[(1E)-pentanimidoyl]-L-ornithine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          89.63 
_cell.angle_gamma         90 
_cell.entry_id            3P8P 
_cell.length_a            47.226 
_cell.length_b            79.632 
_cell.length_c            73.608 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P8P 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H21 N3 O2' 
_chem_comp.formula_weight    215.293 
_chem_comp.id                LN6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~5~-[(1E)-pentanimidoyl]-L-ornithine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     N5-(1-iminopentyl)-L-ornithine 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OA1 C LN6 doub 194 n n 
C CA LN6 sing 195 n n 
C OA2 LN6 sing 196 n n 
CA N LN6 sing 197 n n 
N HN LN6 sing 198 n n 
N HNA LN6 sing 199 n n 
CB CA LN6 sing 200 n n 
CA HA LN6 sing 201 n n 
CG CB LN6 sing 202 n n 
CB HB LN6 sing 203 n n 
CB HBA LN6 sing 204 n n 
NE CD LN6 sing 205 n n 
CD CG LN6 sing 206 n n 
CD HD LN6 sing 207 n n 
CD HDA LN6 sing 208 n n 
CZ NE LN6 sing 209 n n 
NE HNE LN6 sing 210 n n 
CG HG LN6 sing 211 n n 
CG HGA LN6 sing 212 n n 
NH2 CZ LN6 doub 213 n n 
CH1 CZ LN6 sing 214 n n 
OA2 HOA2 LN6 sing 215 n n 
CT1 CH1 LN6 sing 216 n n 
CH1 HH1 LN6 sing 217 n n 
CH1 HH1A LN6 sing 218 n n 
NH2 HNH2 LN6 sing 219 n n 
CK1 CI1 LN6 sing 220 n n 
CI1 CT1 LN6 sing 221 n n 
CI1 HI1 LN6 sing 222 n n 
CI1 HI1A LN6 sing 223 n n 
CK1 HK1 LN6 sing 224 n n 
CK1 HK1A LN6 sing 225 n n 
CK1 HK1B LN6 sing 226 n n 
CT1 HT1 LN6 sing 227 n n 
CT1 HT1A LN6 sing 228 n n 
#
_atom_sites.entry_id                     3P8P 
_atom_sites.fract_transf_matrix[1][1]    0.021175 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    -0.000137 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012558 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013586 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 LN6 A 1 286 1 LN6 LN6 . 
D 2 LN6 B 1 286 1 LN6 LN6 . 
E 3 HOH A 1 287 4 HOH HOH . 
E 3 HOH A 2 288 5 HOH HOH . 
E 3 HOH A 3 289 7 HOH HOH . 
E 3 HOH A 4 290 9 HOH HOH . 
E 3 HOH A 5 291 11 HOH HOH . 
E 3 HOH A 6 292 12 HOH HOH . 
E 3 HOH A 7 293 13 HOH HOH . 
E 3 HOH A 8 294 23 HOH HOH . 
E 3 HOH A 9 295 27 HOH HOH . 
E 3 HOH A 10 296 28 HOH HOH . 
E 3 HOH A 11 297 30 HOH HOH . 
E 3 HOH A 12 298 31 HOH HOH . 
E 3 HOH A 13 299 33 HOH HOH . 
E 3 HOH A 14 300 36 HOH HOH . 
E 3 HOH A 15 301 38 HOH HOH . 
E 3 HOH A 16 302 42 HOH HOH . 
E 3 HOH A 17 303 44 HOH HOH . 
E 3 HOH A 18 304 45 HOH HOH . 
E 3 HOH A 19 305 47 HOH HOH . 
E 3 HOH A 20 306 49 HOH HOH . 
E 3 HOH A 21 307 51 HOH HOH . 
E 3 HOH A 22 308 53 HOH HOH . 
E 3 HOH A 23 309 59 HOH HOH . 
E 3 HOH A 24 310 60 HOH HOH . 
E 3 HOH A 25 311 62 HOH HOH . 
E 3 HOH A 26 312 64 HOH HOH . 
E 3 HOH A 27 313 65 HOH HOH . 
E 3 HOH A 28 314 66 HOH HOH . 
E 3 HOH A 29 315 68 HOH HOH . 
E 3 HOH A 30 316 72 HOH HOH . 
E 3 HOH A 31 317 73 HOH HOH . 
E 3 HOH A 32 318 76 HOH HOH . 
E 3 HOH A 33 319 78 HOH HOH . 
E 3 HOH A 34 320 83 HOH HOH . 
E 3 HOH A 35 321 84 HOH HOH . 
E 3 HOH A 36 322 86 HOH HOH . 
E 3 HOH A 37 323 93 HOH HOH . 
E 3 HOH A 38 324 96 HOH HOH . 
E 3 HOH A 39 325 102 HOH HOH . 
E 3 HOH A 40 326 103 HOH HOH . 
E 3 HOH A 41 327 110 HOH HOH . 
E 3 HOH A 42 328 111 HOH HOH . 
E 3 HOH A 43 329 116 HOH HOH . 
E 3 HOH A 44 330 118 HOH HOH . 
E 3 HOH A 45 331 119 HOH HOH . 
E 3 HOH A 46 332 121 HOH HOH . 
E 3 HOH A 47 333 124 HOH HOH . 
E 3 HOH A 48 334 125 HOH HOH . 
E 3 HOH A 49 335 126 HOH HOH . 
E 3 HOH A 50 336 127 HOH HOH . 
E 3 HOH A 51 337 128 HOH HOH . 
E 3 HOH A 52 338 129 HOH HOH . 
E 3 HOH A 53 339 130 HOH HOH . 
E 3 HOH A 54 340 132 HOH HOH . 
E 3 HOH A 55 341 133 HOH HOH . 
E 3 HOH A 56 342 134 HOH HOH . 
E 3 HOH A 57 343 136 HOH HOH . 
E 3 HOH A 58 344 137 HOH HOH . 
E 3 HOH A 59 345 139 HOH HOH . 
E 3 HOH A 60 346 146 HOH HOH . 
E 3 HOH A 61 347 147 HOH HOH . 
E 3 HOH A 62 348 148 HOH HOH . 
E 3 HOH A 63 349 150 HOH HOH . 
E 3 HOH A 64 350 151 HOH HOH . 
F 3 HOH B 1 287 1 HOH HOH . 
F 3 HOH B 2 288 2 HOH HOH . 
F 3 HOH B 3 289 3 HOH HOH . 
F 3 HOH B 4 290 6 HOH HOH . 
F 3 HOH B 5 291 8 HOH HOH . 
F 3 HOH B 6 292 10 HOH HOH . 
F 3 HOH B 7 293 14 HOH HOH . 
F 3 HOH B 8 294 15 HOH HOH . 
F 3 HOH B 9 295 16 HOH HOH . 
F 3 HOH B 10 296 17 HOH HOH . 
F 3 HOH B 11 297 18 HOH HOH . 
F 3 HOH B 12 298 20 HOH HOH . 
F 3 HOH B 13 299 22 HOH HOH . 
F 3 HOH B 14 300 25 HOH HOH . 
F 3 HOH B 15 301 26 HOH HOH . 
F 3 HOH B 16 302 29 HOH HOH . 
F 3 HOH B 17 303 32 HOH HOH . 
F 3 HOH B 18 304 34 HOH HOH . 
F 3 HOH B 19 305 35 HOH HOH . 
F 3 HOH B 20 306 39 HOH HOH . 
F 3 HOH B 21 307 41 HOH HOH . 
F 3 HOH B 22 308 48 HOH HOH . 
F 3 HOH B 23 309 50 HOH HOH . 
F 3 HOH B 24 310 54 HOH HOH . 
F 3 HOH B 25 311 55 HOH HOH . 
F 3 HOH B 26 312 56 HOH HOH . 
F 3 HOH B 27 313 58 HOH HOH . 
F 3 HOH B 28 314 61 HOH HOH . 
F 3 HOH B 29 315 63 HOH HOH . 
F 3 HOH B 30 316 67 HOH HOH . 
F 3 HOH B 31 317 70 HOH HOH . 
F 3 HOH B 32 318 71 HOH HOH . 
F 3 HOH B 33 319 74 HOH HOH . 
F 3 HOH B 34 320 75 HOH HOH . 
F 3 HOH B 35 321 77 HOH HOH . 
F 3 HOH B 36 322 79 HOH HOH . 
F 3 HOH B 37 323 80 HOH HOH . 
F 3 HOH B 38 324 81 HOH HOH . 
F 3 HOH B 39 325 82 HOH HOH . 
F 3 HOH B 40 326 85 HOH HOH . 
F 3 HOH B 41 327 88 HOH HOH . 
F 3 HOH B 42 328 89 HOH HOH . 
F 3 HOH B 43 329 90 HOH HOH . 
F 3 HOH B 44 330 91 HOH HOH . 
F 3 HOH B 45 331 94 HOH HOH . 
F 3 HOH B 46 332 95 HOH HOH . 
F 3 HOH B 47 333 97 HOH HOH . 
F 3 HOH B 48 334 98 HOH HOH . 
F 3 HOH B 49 335 100 HOH HOH . 
F 3 HOH B 50 336 101 HOH HOH . 
F 3 HOH B 51 337 104 HOH HOH . 
F 3 HOH B 52 338 105 HOH HOH . 
F 3 HOH B 53 339 106 HOH HOH . 
F 3 HOH B 54 340 108 HOH HOH . 
F 3 HOH B 55 341 109 HOH HOH . 
F 3 HOH B 56 342 112 HOH HOH . 
F 3 HOH B 57 343 113 HOH HOH . 
F 3 HOH B 58 344 114 HOH HOH . 
F 3 HOH B 59 345 115 HOH HOH . 
F 3 HOH B 60 346 131 HOH HOH . 
F 3 HOH B 61 347 138 HOH HOH . 
F 3 HOH B 62 348 141 HOH HOH . 
F 3 HOH B 63 349 142 HOH HOH . 
F 3 HOH B 64 350 144 HOH HOH . 
F 3 HOH B 65 351 149 HOH HOH . 
F 3 HOH B 66 352 152 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C LN6 . . . D 2 18.584 -1.092 37.058 1 36.59 ? C LN6 286 B 1 
HETATM 2 N N LN6 . . . D 2 20.347 -0.505 35.455 1 36.58 ? N LN6 286 B 1 
HETATM 3 C CA LN6 . . . D 2 20.072 -1.203 36.719 1 37.04 ? CA LN6 286 B 1 
HETATM 4 C CB LN6 . . . D 2 20.922 -0.606 37.844 1 35.17 ? CB LN6 286 B 1 
HETATM 5 C CD LN6 . . . D 2 21.7 -0.92 40.22 1 29.18 ? CD LN6 286 B 1 
HETATM 6 N NE LN6 . . . D 2 21.663 0.526 40.484 1 27.61 ? NE LN6 286 B 1 
HETATM 7 C CG LN6 . . . D 2 20.653 -1.311 39.174 1 32.09 ? CG LN6 286 B 1 
HETATM 8 C CZ LN6 . . . D 2 20.64 1.094 41.116 1 25.89 ? CZ LN6 286 B 1 
HETATM 9 O OA1 LN6 . . . D 2 18.053 -2.095 37.582 1 36.21 ? OA1 LN6 286 B 1 
HETATM 10 O OA2 LN6 . . . D 2 18.008 -0.019 36.775 1 36.12 ? OA2 LN6 286 B 1 
HETATM 11 C CH1 LN6 . . . D 2 20.652 2.603 41.363 1 27.4 ? CH1 LN6 286 B 1 
HETATM 12 N NH2 LN6 . . . D 2 19.63 0.358 41.572 1 17.88 ? NH2 LN6 286 B 1 
HETATM 13 C CI1 LN6 . . . D 2 21.881 2.24 43.536 1 33.28 ? CI1 LN6 286 B 1 
HETATM 14 C CK1 LN6 . . . D 2 23.07 2.665 44.4 1 32.39 ? CK1 LN6 286 B 1 
HETATM 15 C CT1 LN6 . . . D 2 21.864 2.999 42.208 1 30.48 ? CT1 LN6 286 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           15 
#