data_3P96 # _model_server_result.job_id 9DtrGIn64Xoqg7x06TfRlA _model_server_result.datetime_utc '2024-11-18 08:36:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":412}' # _entry.id 3P96 # _exptl.entry_id 3P96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P96 _cell.length_a 65.53 _cell.length_b 109.19 _cell.length_c 134.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 65.53 109.19 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 191 A ASP 187 1_555 B MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc2 A O ASP 193 A ASP 189 1_555 B MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc3 A OD1 ASP 347 A ASP 343 1_555 B MG MG . A MG 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc4 B MG MG . A MG 412 1_555 E O HOH . A HOH 429 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc5 B MG MG . A MG 412 1_555 E O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc6 B MG MG . A MG 412 1_555 E O HOH . A HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3P96 _atom_sites.fract_transf_matrix[1][1] 0.01526 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009158 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007445 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 412 1 MG MG . C 3 CL A 1 413 7 CL CL . D 4 EDO A 1 414 1 EDO EDO . E 5 HOH A 1 415 1 HOH HOH . E 5 HOH A 2 416 3 HOH HOH . E 5 HOH A 3 417 5 HOH HOH . E 5 HOH A 4 418 6 HOH HOH . E 5 HOH A 5 419 7 HOH HOH . E 5 HOH A 6 420 8 HOH HOH . E 5 HOH A 7 421 9 HOH HOH . E 5 HOH A 8 422 10 HOH HOH . E 5 HOH A 9 423 11 HOH HOH . E 5 HOH A 10 424 12 HOH HOH . E 5 HOH A 11 425 14 HOH HOH . E 5 HOH A 12 426 15 HOH HOH . E 5 HOH A 13 427 16 HOH HOH . E 5 HOH A 14 428 17 HOH HOH . E 5 HOH A 15 429 18 HOH HOH . E 5 HOH A 16 430 19 HOH HOH . E 5 HOH A 17 431 20 HOH HOH . E 5 HOH A 18 432 21 HOH HOH . E 5 HOH A 19 433 22 HOH HOH . E 5 HOH A 20 434 23 HOH HOH . E 5 HOH A 21 435 24 HOH HOH . E 5 HOH A 22 436 25 HOH HOH . E 5 HOH A 23 437 26 HOH HOH . E 5 HOH A 24 438 27 HOH HOH . E 5 HOH A 25 439 28 HOH HOH . E 5 HOH A 26 440 29 HOH HOH . E 5 HOH A 27 441 30 HOH HOH . E 5 HOH A 28 442 31 HOH HOH . E 5 HOH A 29 443 32 HOH HOH . E 5 HOH A 30 444 33 HOH HOH . E 5 HOH A 31 445 34 HOH HOH . E 5 HOH A 32 446 35 HOH HOH . E 5 HOH A 33 447 36 HOH HOH . E 5 HOH A 34 448 37 HOH HOH . E 5 HOH A 35 449 38 HOH HOH . E 5 HOH A 36 450 39 HOH HOH . E 5 HOH A 37 451 40 HOH HOH . E 5 HOH A 38 452 41 HOH HOH . E 5 HOH A 39 453 42 HOH HOH . E 5 HOH A 40 454 43 HOH HOH . E 5 HOH A 41 455 45 HOH HOH . E 5 HOH A 42 456 46 HOH HOH . E 5 HOH A 43 457 47 HOH HOH . E 5 HOH A 44 458 48 HOH HOH . E 5 HOH A 45 459 49 HOH HOH . E 5 HOH A 46 460 50 HOH HOH . E 5 HOH A 47 461 51 HOH HOH . E 5 HOH A 48 462 52 HOH HOH . E 5 HOH A 49 463 53 HOH HOH . E 5 HOH A 50 464 54 HOH HOH . E 5 HOH A 51 465 55 HOH HOH . E 5 HOH A 52 466 56 HOH HOH . E 5 HOH A 53 467 57 HOH HOH . E 5 HOH A 54 468 58 HOH HOH . E 5 HOH A 55 469 59 HOH HOH . E 5 HOH A 56 470 60 HOH HOH . E 5 HOH A 57 471 61 HOH HOH . E 5 HOH A 58 472 62 HOH HOH . E 5 HOH A 59 473 63 HOH HOH . E 5 HOH A 60 474 64 HOH HOH . E 5 HOH A 61 475 65 HOH HOH . E 5 HOH A 62 476 67 HOH HOH . E 5 HOH A 63 477 68 HOH HOH . E 5 HOH A 64 478 69 HOH HOH . E 5 HOH A 65 479 70 HOH HOH . E 5 HOH A 66 480 71 HOH HOH . E 5 HOH A 67 481 72 HOH HOH . E 5 HOH A 68 482 73 HOH HOH . E 5 HOH A 69 483 74 HOH HOH . E 5 HOH A 70 484 75 HOH HOH . E 5 HOH A 71 485 76 HOH HOH . E 5 HOH A 72 486 78 HOH HOH . E 5 HOH A 73 487 79 HOH HOH . E 5 HOH A 74 488 80 HOH HOH . E 5 HOH A 75 489 81 HOH HOH . E 5 HOH A 76 490 82 HOH HOH . E 5 HOH A 77 491 83 HOH HOH . E 5 HOH A 78 492 84 HOH HOH . E 5 HOH A 79 493 85 HOH HOH . E 5 HOH A 80 494 87 HOH HOH . E 5 HOH A 81 495 89 HOH HOH . E 5 HOH A 82 496 90 HOH HOH . E 5 HOH A 83 497 91 HOH HOH . E 5 HOH A 84 498 93 HOH HOH . E 5 HOH A 85 499 98 HOH HOH . E 5 HOH A 86 500 99 HOH HOH . E 5 HOH A 87 501 100 HOH HOH . E 5 HOH A 88 502 101 HOH HOH . E 5 HOH A 89 503 102 HOH HOH . E 5 HOH A 90 504 103 HOH HOH . E 5 HOH A 91 505 104 HOH HOH . E 5 HOH A 92 506 105 HOH HOH . E 5 HOH A 93 507 106 HOH HOH . E 5 HOH A 94 508 107 HOH HOH . E 5 HOH A 95 509 108 HOH HOH . E 5 HOH A 96 510 109 HOH HOH . E 5 HOH A 97 511 110 HOH HOH . E 5 HOH A 98 512 111 HOH HOH . E 5 HOH A 99 513 112 HOH HOH . E 5 HOH A 100 514 113 HOH HOH . E 5 HOH A 101 515 114 HOH HOH . E 5 HOH A 102 516 115 HOH HOH . E 5 HOH A 103 517 117 HOH HOH . E 5 HOH A 104 518 118 HOH HOH . E 5 HOH A 105 519 119 HOH HOH . E 5 HOH A 106 520 120 HOH HOH . E 5 HOH A 107 521 121 HOH HOH . E 5 HOH A 108 522 122 HOH HOH . E 5 HOH A 109 523 123 HOH HOH . E 5 HOH A 110 524 124 HOH HOH . E 5 HOH A 111 525 125 HOH HOH . E 5 HOH A 112 526 126 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 19.856 _atom_site.Cartn_y 31.288 _atom_site.Cartn_z 15.709 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.19 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 412 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #