data_3P98 # _model_server_result.job_id -TE0oAoRjri4KQa1BkDRFA _model_server_result.datetime_utc '2025-01-25 08:33:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3p98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3P98 # _exptl.entry_id 3P98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3P98 _cell.length_a 60.63 _cell.length_b 90.212 _cell.length_c 96.047 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3P98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 75 A CYS 77 1_555 A SG CYS 121 A CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? disulf ? disulf2 B SG CYS 75 B CYS 77 1_555 B SG CYS 121 B CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 3P98 _atom_sites.fract_transf_matrix[1][1] 0.016494 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011085 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010412 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CIT A 1 1 1 CIT CIT . D 3 PEG A 1 290 1 PEG PEG . E 2 CIT B 1 1 1 CIT CIT . F 3 PEG B 1 290 1 PEG PEG . G 4 HOH A 1 291 1 HOH HOH . G 4 HOH A 2 292 3 HOH HOH . G 4 HOH A 3 293 4 HOH HOH . G 4 HOH A 4 294 7 HOH HOH . G 4 HOH A 5 295 10 HOH HOH . G 4 HOH A 6 296 11 HOH HOH . G 4 HOH A 7 297 13 HOH HOH . G 4 HOH A 8 298 20 HOH HOH . G 4 HOH A 9 299 21 HOH HOH . G 4 HOH A 10 300 22 HOH HOH . G 4 HOH A 11 301 23 HOH HOH . G 4 HOH A 12 302 25 HOH HOH . G 4 HOH A 13 303 26 HOH HOH . G 4 HOH A 14 304 27 HOH HOH . G 4 HOH A 15 305 28 HOH HOH . G 4 HOH A 16 306 29 HOH HOH . G 4 HOH A 17 307 30 HOH HOH . G 4 HOH A 18 308 31 HOH HOH . G 4 HOH A 19 309 36 HOH HOH . G 4 HOH A 20 310 39 HOH HOH . G 4 HOH A 21 311 42 HOH HOH . G 4 HOH A 22 312 43 HOH HOH . G 4 HOH A 23 313 44 HOH HOH . G 4 HOH A 24 314 45 HOH HOH . G 4 HOH A 25 315 46 HOH HOH . G 4 HOH A 26 316 49 HOH HOH . G 4 HOH A 27 317 52 HOH HOH . G 4 HOH A 28 318 55 HOH HOH . G 4 HOH A 29 319 57 HOH HOH . G 4 HOH A 30 320 58 HOH HOH . G 4 HOH A 31 321 59 HOH HOH . G 4 HOH A 32 322 61 HOH HOH . G 4 HOH A 33 323 65 HOH HOH . G 4 HOH A 34 324 67 HOH HOH . G 4 HOH A 35 325 73 HOH HOH . G 4 HOH A 36 326 74 HOH HOH . G 4 HOH A 37 327 81 HOH HOH . G 4 HOH A 38 328 82 HOH HOH . G 4 HOH A 39 329 84 HOH HOH . G 4 HOH A 40 330 86 HOH HOH . G 4 HOH A 41 331 88 HOH HOH . G 4 HOH A 42 332 89 HOH HOH . G 4 HOH A 43 333 90 HOH HOH . G 4 HOH A 44 334 91 HOH HOH . G 4 HOH A 45 335 93 HOH HOH . G 4 HOH A 46 336 94 HOH HOH . G 4 HOH A 47 337 95 HOH HOH . G 4 HOH A 48 338 97 HOH HOH . G 4 HOH A 49 339 98 HOH HOH . G 4 HOH A 50 340 103 HOH HOH . G 4 HOH A 51 341 108 HOH HOH . G 4 HOH A 52 342 109 HOH HOH . G 4 HOH A 53 343 110 HOH HOH . G 4 HOH A 54 344 111 HOH HOH . G 4 HOH A 55 345 112 HOH HOH . G 4 HOH A 56 346 113 HOH HOH . G 4 HOH A 57 347 114 HOH HOH . G 4 HOH A 58 348 117 HOH HOH . G 4 HOH A 59 349 118 HOH HOH . G 4 HOH A 60 350 119 HOH HOH . G 4 HOH A 61 351 121 HOH HOH . G 4 HOH A 62 352 127 HOH HOH . G 4 HOH A 63 353 128 HOH HOH . G 4 HOH A 64 354 133 HOH HOH . G 4 HOH A 65 355 134 HOH HOH . G 4 HOH A 66 356 137 HOH HOH . G 4 HOH A 67 357 138 HOH HOH . G 4 HOH A 68 358 139 HOH HOH . G 4 HOH A 69 359 140 HOH HOH . G 4 HOH A 70 360 141 HOH HOH . G 4 HOH A 71 361 143 HOH HOH . G 4 HOH A 72 362 145 HOH HOH . G 4 HOH A 73 363 146 HOH HOH . G 4 HOH A 74 364 148 HOH HOH . G 4 HOH A 75 365 149 HOH HOH . G 4 HOH A 76 366 151 HOH HOH . G 4 HOH A 77 367 152 HOH HOH . G 4 HOH A 78 368 153 HOH HOH . G 4 HOH A 79 369 154 HOH HOH . G 4 HOH A 80 370 155 HOH HOH . G 4 HOH A 81 371 158 HOH HOH . G 4 HOH A 82 372 159 HOH HOH . G 4 HOH A 83 373 161 HOH HOH . G 4 HOH A 84 374 162 HOH HOH . G 4 HOH A 85 375 163 HOH HOH . G 4 HOH A 86 376 167 HOH HOH . G 4 HOH A 87 377 168 HOH HOH . G 4 HOH A 88 378 169 HOH HOH . G 4 HOH A 89 379 171 HOH HOH . G 4 HOH A 90 380 172 HOH HOH . G 4 HOH A 91 381 173 HOH HOH . G 4 HOH A 92 382 177 HOH HOH . G 4 HOH A 93 383 180 HOH HOH . G 4 HOH A 94 384 182 HOH HOH . G 4 HOH A 95 385 183 HOH HOH . G 4 HOH A 96 386 185 HOH HOH . G 4 HOH A 97 387 186 HOH HOH . G 4 HOH A 98 388 187 HOH HOH . G 4 HOH A 99 389 190 HOH HOH . G 4 HOH A 100 390 191 HOH HOH . G 4 HOH A 101 391 192 HOH HOH . G 4 HOH A 102 392 193 HOH HOH . G 4 HOH A 103 393 197 HOH HOH . G 4 HOH A 104 394 198 HOH HOH . G 4 HOH A 105 395 202 HOH HOH . G 4 HOH A 106 396 204 HOH HOH . G 4 HOH A 107 397 205 HOH HOH . G 4 HOH A 108 398 207 HOH HOH . G 4 HOH A 109 399 208 HOH HOH . G 4 HOH A 110 400 210 HOH HOH . G 4 HOH A 111 401 214 HOH HOH . G 4 HOH A 112 402 216 HOH HOH . G 4 HOH A 113 403 219 HOH HOH . G 4 HOH A 114 404 224 HOH HOH . G 4 HOH A 115 405 225 HOH HOH . G 4 HOH A 116 406 226 HOH HOH . G 4 HOH A 117 407 229 HOH HOH . G 4 HOH A 118 408 231 HOH HOH . G 4 HOH A 119 409 234 HOH HOH . G 4 HOH A 120 410 237 HOH HOH . G 4 HOH A 121 411 238 HOH HOH . G 4 HOH A 122 412 242 HOH HOH . G 4 HOH A 123 413 245 HOH HOH . H 4 HOH B 1 2 2 HOH HOH . H 4 HOH B 2 239 239 HOH HOH . H 4 HOH B 3 291 5 HOH HOH . H 4 HOH B 4 292 6 HOH HOH . H 4 HOH B 5 293 8 HOH HOH . H 4 HOH B 6 294 9 HOH HOH . H 4 HOH B 7 295 12 HOH HOH . H 4 HOH B 8 296 14 HOH HOH . H 4 HOH B 9 297 15 HOH HOH . H 4 HOH B 10 298 16 HOH HOH . H 4 HOH B 11 299 17 HOH HOH . H 4 HOH B 12 300 18 HOH HOH . H 4 HOH B 13 301 19 HOH HOH . H 4 HOH B 14 302 24 HOH HOH . H 4 HOH B 15 303 32 HOH HOH . H 4 HOH B 16 304 33 HOH HOH . H 4 HOH B 17 305 34 HOH HOH . H 4 HOH B 18 306 35 HOH HOH . H 4 HOH B 19 307 37 HOH HOH . H 4 HOH B 20 308 38 HOH HOH . H 4 HOH B 21 309 40 HOH HOH . H 4 HOH B 22 310 41 HOH HOH . H 4 HOH B 23 311 47 HOH HOH . H 4 HOH B 24 312 48 HOH HOH . H 4 HOH B 25 313 50 HOH HOH . H 4 HOH B 26 314 51 HOH HOH . H 4 HOH B 27 315 53 HOH HOH . H 4 HOH B 28 316 54 HOH HOH . H 4 HOH B 29 317 56 HOH HOH . H 4 HOH B 30 318 60 HOH HOH . H 4 HOH B 31 319 62 HOH HOH . H 4 HOH B 32 320 63 HOH HOH . H 4 HOH B 33 321 64 HOH HOH . H 4 HOH B 34 322 66 HOH HOH . H 4 HOH B 35 323 68 HOH HOH . H 4 HOH B 36 324 69 HOH HOH . H 4 HOH B 37 325 70 HOH HOH . H 4 HOH B 38 326 71 HOH HOH . H 4 HOH B 39 327 72 HOH HOH . H 4 HOH B 40 328 75 HOH HOH . H 4 HOH B 41 329 76 HOH HOH . H 4 HOH B 42 330 77 HOH HOH . H 4 HOH B 43 331 78 HOH HOH . H 4 HOH B 44 332 79 HOH HOH . H 4 HOH B 45 333 80 HOH HOH . H 4 HOH B 46 334 83 HOH HOH . H 4 HOH B 47 335 85 HOH HOH . H 4 HOH B 48 336 87 HOH HOH . H 4 HOH B 49 337 92 HOH HOH . H 4 HOH B 50 338 96 HOH HOH . H 4 HOH B 51 339 99 HOH HOH . H 4 HOH B 52 340 100 HOH HOH . H 4 HOH B 53 341 101 HOH HOH . H 4 HOH B 54 342 102 HOH HOH . H 4 HOH B 55 343 104 HOH HOH . H 4 HOH B 56 344 105 HOH HOH . H 4 HOH B 57 345 106 HOH HOH . H 4 HOH B 58 346 107 HOH HOH . H 4 HOH B 59 347 115 HOH HOH . H 4 HOH B 60 348 116 HOH HOH . H 4 HOH B 61 349 120 HOH HOH . H 4 HOH B 62 350 122 HOH HOH . H 4 HOH B 63 351 123 HOH HOH . H 4 HOH B 64 352 124 HOH HOH . H 4 HOH B 65 353 125 HOH HOH . H 4 HOH B 66 354 126 HOH HOH . H 4 HOH B 67 355 129 HOH HOH . H 4 HOH B 68 356 130 HOH HOH . H 4 HOH B 69 357 131 HOH HOH . H 4 HOH B 70 358 132 HOH HOH . H 4 HOH B 71 359 135 HOH HOH . H 4 HOH B 72 360 136 HOH HOH . H 4 HOH B 73 361 142 HOH HOH . H 4 HOH B 74 362 144 HOH HOH . H 4 HOH B 75 363 147 HOH HOH . H 4 HOH B 76 364 150 HOH HOH . H 4 HOH B 77 365 156 HOH HOH . H 4 HOH B 78 366 157 HOH HOH . H 4 HOH B 79 367 160 HOH HOH . H 4 HOH B 80 368 164 HOH HOH . H 4 HOH B 81 369 165 HOH HOH . H 4 HOH B 82 370 166 HOH HOH . H 4 HOH B 83 371 170 HOH HOH . H 4 HOH B 84 372 174 HOH HOH . H 4 HOH B 85 373 175 HOH HOH . H 4 HOH B 86 374 176 HOH HOH . H 4 HOH B 87 375 178 HOH HOH . H 4 HOH B 88 376 179 HOH HOH . H 4 HOH B 89 377 181 HOH HOH . H 4 HOH B 90 378 184 HOH HOH . H 4 HOH B 91 379 188 HOH HOH . H 4 HOH B 92 380 189 HOH HOH . H 4 HOH B 93 381 194 HOH HOH . H 4 HOH B 94 382 195 HOH HOH . H 4 HOH B 95 383 196 HOH HOH . H 4 HOH B 96 384 199 HOH HOH . H 4 HOH B 97 385 200 HOH HOH . H 4 HOH B 98 386 201 HOH HOH . H 4 HOH B 99 387 203 HOH HOH . H 4 HOH B 100 388 206 HOH HOH . H 4 HOH B 101 389 209 HOH HOH . H 4 HOH B 102 390 211 HOH HOH . H 4 HOH B 103 391 212 HOH HOH . H 4 HOH B 104 392 213 HOH HOH . H 4 HOH B 105 393 215 HOH HOH . H 4 HOH B 106 394 217 HOH HOH . H 4 HOH B 107 395 218 HOH HOH . H 4 HOH B 108 396 220 HOH HOH . H 4 HOH B 109 397 221 HOH HOH . H 4 HOH B 110 398 222 HOH HOH . H 4 HOH B 111 399 223 HOH HOH . H 4 HOH B 112 400 227 HOH HOH . H 4 HOH B 113 401 228 HOH HOH . H 4 HOH B 114 402 230 HOH HOH . H 4 HOH B 115 403 232 HOH HOH . H 4 HOH B 116 404 233 HOH HOH . H 4 HOH B 117 405 235 HOH HOH . H 4 HOH B 118 406 236 HOH HOH . H 4 HOH B 119 407 240 HOH HOH . H 4 HOH B 120 408 241 HOH HOH . H 4 HOH B 121 409 243 HOH HOH . H 4 HOH B 122 410 244 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . E 2 -18.961 -9.416 -46.911 1 49.6 ? C1 CIT 1 B 1 HETATM 2 O O1 CIT . . . E 2 -18.294 -8.53 -47.48 1 46.99 ? O1 CIT 1 B 1 HETATM 3 O O2 CIT . . . E 2 -19.131 -10.581 -47.354 1 46.77 ? O2 CIT 1 B 1 HETATM 4 C C2 CIT . . . E 2 -19.607 -9.026 -45.61 1 51.53 ? C2 CIT 1 B 1 HETATM 5 C C3 CIT . . . E 2 -18.843 -7.89 -44.932 1 51.83 ? C3 CIT 1 B 1 HETATM 6 O O7 CIT . . . E 2 -19.815 -7.378 -43.995 1 54.26 ? O7 CIT 1 B 1 HETATM 7 C C4 CIT . . . E 2 -18.504 -6.733 -45.93 1 51.04 ? C4 CIT 1 B 1 HETATM 8 C C5 CIT . . . E 2 -19.009 -5.306 -45.707 1 49.9 ? C5 CIT 1 B 1 HETATM 9 O O3 CIT . . . E 2 -18.415 -4.395 -46.299 1 50.28 ? O3 CIT 1 B 1 HETATM 10 O O4 CIT . . . E 2 -19.988 -5.001 -44.991 1 49.97 ? O4 CIT 1 B 1 HETATM 11 C C6 CIT . . . E 2 -17.626 -8.559 -44.227 1 52.09 ? C6 CIT 1 B 1 HETATM 12 O O5 CIT . . . E 2 -16.85 -7.959 -43.47 1 48.53 ? O5 CIT 1 B 1 HETATM 13 O O6 CIT . . . E 2 -17.367 -9.788 -44.373 1 58.35 ? O6 CIT 1 B 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #