data_3P99
#
_model_server_result.job_id            KxpGvZyMYG1Je3I2qDHOYg 
_model_server_result.datetime_utc      '2024-11-15 08:55:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p99 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":490}' 
#
_entry.id    3P99 
#
_exptl.entry_id    3P99 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              466.781 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3alpha,9beta,10alpha,13alpha)-30-cyclopropylidenelanost-7-en-3-ol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         107.93 
_cell.angle_beta          102.43 
_cell.angle_gamma         99.57 
_cell.entry_id            3P99 
_cell.length_a            59.61 
_cell.length_b            80.57 
_cell.length_c            115.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P99 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 394 A CYS 422 1_555 E FE HEM . A HEM 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc2 B SG CYS 394 B CYS 422 1_555 G FE HEM . B HEM 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc3 C SG CYS 394 C CYS 422 1_555 I FE HEM . C HEM 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc4 D SG CYS 394 D CYS 422 1_555 K FE HEM . D HEM 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
#
_chem_comp.formula           'C33 H54 O' 
_chem_comp.formula_weight    466.781 
_chem_comp.id                LNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3alpha,9beta,10alpha,13alpha)-30-cyclopropylidenelanost-7-en-3-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAB LNP sing 276 n n 
CAA CAF LNP sing 277 n n 
CAB CAC LNP sing 278 n n 
CAB CAG LNP sing 279 n n 
CAC CAD LNP sing 280 n n 
CAC CAJ LNP doub 281 n n 
CAD CAE LNP sing 282 n n 
CAD CAO LNP sing 283 n n 
CAD CAR LNP sing 284 n n 
CAE CAF LNP sing 285 n n 
CAE CAQ LNP sing 286 n n 
CAE CAS LNP sing 287 n n 
CAG CAH LNP sing 288 n n 
CAG CAK LNP sing 289 n n 
CAG CAT LNP sing 290 n n 
CAH CAI LNP sing 291 n n 
CAH CAN LNP sing 292 n n 
CAI CAJ LNP sing 293 n n 
CAK CAL LNP sing 294 n n 
CAL CAM LNP sing 295 n n 
CAM CAN LNP sing 296 n n 
CAM OBH LNP sing 297 n n 
CAN CAW LNP sing 298 n n 
CAN CAX LNP sing 299 n n 
CAO CAP LNP sing 300 n n 
CAP CAQ LNP sing 301 n n 
CAQ CAV LNP sing 302 n n 
CAR CBF LNP doub 303 n n 
CAV CAY LNP sing 304 n n 
CAV CAZ LNP sing 305 n n 
CAZ CBA LNP sing 306 n n 
CBA CBB LNP sing 307 n n 
CBB CBC LNP sing 308 n n 
CBC CBD LNP sing 309 n n 
CBC CBE LNP sing 310 n n 
CBF CBG LNP sing 311 n n 
CBF CBH LNP sing 312 n n 
CBG CBH LNP sing 313 n n 
CAA HAA LNP sing 314 n n 
CAA HAAA LNP sing 315 n n 
CAB HAB LNP sing 316 n n 
CAF HAF LNP sing 317 n n 
CAF HAFA LNP sing 318 n n 
CAH HAH LNP sing 319 n n 
CAI HAI LNP sing 320 n n 
CAI HAIA LNP sing 321 n n 
CAJ HAJ LNP sing 322 n n 
CAK HAK LNP sing 323 n n 
CAK HAKA LNP sing 324 n n 
CAL HAL LNP sing 325 n n 
CAL HALA LNP sing 326 n n 
CAM HAM LNP sing 327 n n 
CAO HAO LNP sing 328 n n 
CAO HAOA LNP sing 329 n n 
CAP HAP LNP sing 330 n n 
CAP HAPA LNP sing 331 n n 
CAQ HAQ LNP sing 332 n n 
CAR HAR LNP sing 333 n n 
CAS HAS LNP sing 334 n n 
CAS HASA LNP sing 335 n n 
CAS HASB LNP sing 336 n n 
CAT HAT LNP sing 337 n n 
CAT HATA LNP sing 338 n n 
CAT HATB LNP sing 339 n n 
CAV HAV LNP sing 340 n n 
CAW HAW LNP sing 341 n n 
CAW HAWA LNP sing 342 n n 
CAW HAWB LNP sing 343 n n 
CAX HAX LNP sing 344 n n 
CAX HAXA LNP sing 345 n n 
CAX HAXB LNP sing 346 n n 
CAY HAY LNP sing 347 n n 
CAY HAYA LNP sing 348 n n 
CAY HAYB LNP sing 349 n n 
CAZ HAZ LNP sing 350 n n 
CAZ HAZA LNP sing 351 n n 
CBA HBA LNP sing 352 n n 
CBA HBAA LNP sing 353 n n 
CBB HBB LNP sing 354 n n 
CBB HBBA LNP sing 355 n n 
CBC HBC LNP sing 356 n n 
CBD HBD LNP sing 357 n n 
CBD HBDA LNP sing 358 n n 
CBD HBDB LNP sing 359 n n 
CBE HBE LNP sing 360 n n 
CBE HBEA LNP sing 361 n n 
CBE HBEB LNP sing 362 n n 
CBG HBG LNP sing 363 n n 
CBG HBGA LNP sing 364 n n 
CBH HBH LNP sing 365 n n 
CBH HBHA LNP sing 366 n n 
OBH HOBH LNP sing 367 n n 
#
_atom_sites.entry_id                     3P99 
_atom_sites.fract_transf_matrix[1][1]    0.016776 
_atom_sites.fract_transf_matrix[1][2]    0.002828 
_atom_sites.fract_transf_matrix[1][3]    0.005039 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012587 
_atom_sites.fract_transf_matrix[2][3]    0.004808 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 482 480 HEM HEM . 
F 3 LNP A 1 490 490 LNP LNP . 
G 2 HEM B 1 482 480 HEM HEM . 
H 3 LNP B 1 490 490 LNP LNP . 
I 2 HEM C 1 482 480 HEM HEM . 
J 3 LNP C 1 490 490 LNP LNP . 
K 2 HEM D 1 482 480 HEM HEM . 
L 3 LNP D 1 490 490 LNP LNP . 
M 4 HOH A 1 3 3 HOH HOH . 
M 4 HOH A 2 8 8 HOH HOH . 
M 4 HOH A 3 12 12 HOH HOH . 
M 4 HOH A 4 18 18 HOH HOH . 
M 4 HOH A 5 21 21 HOH HOH . 
M 4 HOH A 6 28 28 HOH HOH . 
M 4 HOH A 7 483 29 HOH HOH . 
M 4 HOH A 8 484 30 HOH HOH . 
M 4 HOH A 9 485 34 HOH HOH . 
M 4 HOH A 10 486 35 HOH HOH . 
M 4 HOH A 11 487 37 HOH HOH . 
M 4 HOH A 12 488 39 HOH HOH . 
M 4 HOH A 13 489 40 HOH HOH . 
M 4 HOH A 14 491 50 HOH HOH . 
N 4 HOH B 1 2 2 HOH HOH . 
N 4 HOH B 2 5 5 HOH HOH . 
N 4 HOH B 3 6 6 HOH HOH . 
N 4 HOH B 4 7 7 HOH HOH . 
N 4 HOH B 5 9 9 HOH HOH . 
N 4 HOH B 6 10 10 HOH HOH . 
N 4 HOH B 7 11 11 HOH HOH . 
N 4 HOH B 8 22 22 HOH HOH . 
N 4 HOH B 9 483 31 HOH HOH . 
N 4 HOH B 10 484 36 HOH HOH . 
N 4 HOH B 11 485 38 HOH HOH . 
N 4 HOH B 12 486 42 HOH HOH . 
N 4 HOH B 13 487 43 HOH HOH . 
O 4 HOH C 1 13 13 HOH HOH . 
O 4 HOH C 2 14 14 HOH HOH . 
O 4 HOH C 3 17 17 HOH HOH . 
O 4 HOH C 4 19 19 HOH HOH . 
O 4 HOH C 5 20 20 HOH HOH . 
O 4 HOH C 6 23 23 HOH HOH . 
O 4 HOH C 7 27 27 HOH HOH . 
O 4 HOH C 8 483 32 HOH HOH . 
O 4 HOH C 9 484 33 HOH HOH . 
O 4 HOH C 10 485 41 HOH HOH . 
O 4 HOH C 11 486 46 HOH HOH . 
O 4 HOH C 12 487 48 HOH HOH . 
P 4 HOH D 1 1 1 HOH HOH . 
P 4 HOH D 2 4 4 HOH HOH . 
P 4 HOH D 3 15 15 HOH HOH . 
P 4 HOH D 4 16 16 HOH HOH . 
P 4 HOH D 5 24 24 HOH HOH . 
P 4 HOH D 6 25 25 HOH HOH . 
P 4 HOH D 7 26 26 HOH HOH . 
P 4 HOH D 8 483 44 HOH HOH . 
P 4 HOH D 9 484 45 HOH HOH . 
P 4 HOH D 10 485 47 HOH HOH . 
P 4 HOH D 11 486 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA LNP . . . H 3 6.872 -40.137 14.638 0.8 67.37 ? CAA LNP 490 B 1 
HETATM 2 C CAB LNP . . . H 3 8.063 -41.109 14.694 0.8 70.92 ? CAB LNP 490 B 1 
HETATM 3 C CAC LNP . . . H 3 9.224 -40.497 15.424 0.8 68.16 ? CAC LNP 490 B 1 
HETATM 4 C CAD LNP . . . H 3 8.926 -39.615 16.601 0.8 64.98 ? CAD LNP 490 B 1 
HETATM 5 C CAE LNP . . . H 3 7.503 -39.869 17.034 0.8 66 ? CAE LNP 490 B 1 
HETATM 6 C CAF LNP . . . H 3 6.57 -39.386 15.94 0.8 66.02 ? CAF LNP 490 B 1 
HETATM 7 C CAG LNP . . . H 3 8.474 -41.479 13.27 0.8 69.83 ? CAG LNP 490 B 1 
HETATM 8 C CAH LNP . . . H 3 9.764 -42.307 13.226 0.8 69.44 ? CAH LNP 490 B 1 
HETATM 9 C CAI LNP . . . H 3 10.849 -41.944 14.243 0.8 70.26 ? CAI LNP 490 B 1 
HETATM 10 C CAJ LNP . . . H 3 10.483 -40.705 15.021 0.8 68.98 ? CAJ LNP 490 B 1 
HETATM 11 C CAK LNP . . . H 3 8.595 -40.196 12.469 0.8 68.61 ? CAK LNP 490 B 1 
HETATM 12 C CAL LNP . . . H 3 8.91 -40.547 11.027 0.8 68.3 ? CAL LNP 490 B 1 
HETATM 13 C CAM LNP . . . H 3 10.288 -41.186 10.993 0.8 70.24 ? CAM LNP 490 B 1 
HETATM 14 C CAN LNP . . . H 3 10.344 -42.47 11.812 0.8 70.77 ? CAN LNP 490 B 1 
HETATM 15 C CAO LNP . . . H 3 9.731 -39.869 17.866 0.8 61.41 ? CAO LNP 490 B 1 
HETATM 16 C CAP LNP . . . H 3 8.815 -39.365 18.985 0.8 62.47 ? CAP LNP 490 B 1 
HETATM 17 C CAQ LNP . . . H 3 7.435 -39.14 18.367 0.8 63.92 ? CAQ LNP 490 B 1 
HETATM 18 C CAR LNP . . . H 3 9.171 -38.186 16.188 0.8 62.48 ? CAR LNP 490 B 1 
HETATM 19 C CAS LNP . . . H 3 7.282 -41.355 17.277 0.8 67.78 ? CAS LNP 490 B 1 
HETATM 20 C CAT LNP . . . H 3 7.356 -42.323 12.674 0.8 72.89 ? CAT LNP 490 B 1 
HETATM 21 C CAV LNP . . . H 3 6.319 -39.655 19.264 0.8 62.17 ? CAV LNP 490 B 1 
HETATM 22 C CAW LNP . . . H 3 11.8 -42.891 11.949 0.8 71.15 ? CAW LNP 490 B 1 
HETATM 23 C CAX LNP . . . H 3 9.564 -43.567 11.103 0.8 72.73 ? CAX LNP 490 B 1 
HETATM 24 C CAY LNP . . . H 3 5.007 -38.949 18.944 0.8 64.59 ? CAY LNP 490 B 1 
HETATM 25 C CAZ LNP . . . H 3 6.689 -39.478 20.732 0.8 63.82 ? CAZ LNP 490 B 1 
HETATM 26 C CBA LNP . . . H 3 5.638 -38.676 21.493 0.8 61.38 ? CBA LNP 490 B 1 
HETATM 27 C CBB LNP . . . H 3 5.984 -38.609 22.976 0.8 60.32 ? CBB LNP 490 B 1 
HETATM 28 C CBC LNP . . . H 3 4.959 -37.793 23.757 0.8 59.83 ? CBC LNP 490 B 1 
HETATM 29 C CBD LNP . . . H 3 4.45 -38.565 24.97 0.8 59.89 ? CBD LNP 490 B 1 
HETATM 30 C CBE LNP . . . H 3 5.541 -36.447 24.175 0.8 54.83 ? CBE LNP 490 B 1 
HETATM 31 C CBF LNP . . . H 3 10.415 -37.842 15.822 0.8 63.68 ? CBF LNP 490 B 1 
HETATM 32 C CBG LNP . . . H 3 11.353 -36.793 15.349 0.8 62.28 ? CBG LNP 490 B 1 
HETATM 33 C CBH LNP . . . H 3 11.823 -38.269 15.611 0.8 60.4 ? CBH LNP 490 B 1 
HETATM 34 O OBH LNP . . . H 3 10.645 -41.463 9.633 0.8 70.33 ? OBH LNP 490 B 1 
#
_model_server_stats.io_time_ms              39 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           34 
#