data_3P99
#
_model_server_result.job_id            VLP3aXkXvuPcKKWS0kwXVA 
_model_server_result.datetime_utc      '2024-11-15 08:31:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3p99 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":490}' 
#
_entry.id    3P99 
#
_exptl.entry_id    3P99 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              466.781 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3alpha,9beta,10alpha,13alpha)-30-cyclopropylidenelanost-7-en-3-ol 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         107.93 
_cell.angle_beta          102.43 
_cell.angle_gamma         99.57 
_cell.entry_id            3P99 
_cell.length_a            59.61 
_cell.length_b            80.57 
_cell.length_c            115.8 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3P99 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
? monomeric 1 author_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,M 1 1 
B,G,H,N 2 1 
C,I,J,O 3 1 
D,K,L,P 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 H N N 
? 3 J N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 394 A CYS 422 1_555 E FE HEM . A HEM 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc2 B SG CYS 394 B CYS 422 1_555 G FE HEM . B HEM 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc3 C SG CYS 394 C CYS 422 1_555 I FE HEM . C HEM 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? 
metalc ? metalc4 D SG CYS 394 D CYS 422 1_555 K FE HEM . D HEM 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
#
_chem_comp.formula           'C33 H54 O' 
_chem_comp.formula_weight    466.781 
_chem_comp.id                LNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3alpha,9beta,10alpha,13alpha)-30-cyclopropylidenelanost-7-en-3-ol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CAB LNP sing 276 n n 
CAA CAF LNP sing 277 n n 
CAB CAC LNP sing 278 n n 
CAB CAG LNP sing 279 n n 
CAC CAD LNP sing 280 n n 
CAC CAJ LNP doub 281 n n 
CAD CAE LNP sing 282 n n 
CAD CAO LNP sing 283 n n 
CAD CAR LNP sing 284 n n 
CAE CAF LNP sing 285 n n 
CAE CAQ LNP sing 286 n n 
CAE CAS LNP sing 287 n n 
CAG CAH LNP sing 288 n n 
CAG CAK LNP sing 289 n n 
CAG CAT LNP sing 290 n n 
CAH CAI LNP sing 291 n n 
CAH CAN LNP sing 292 n n 
CAI CAJ LNP sing 293 n n 
CAK CAL LNP sing 294 n n 
CAL CAM LNP sing 295 n n 
CAM CAN LNP sing 296 n n 
CAM OBH LNP sing 297 n n 
CAN CAW LNP sing 298 n n 
CAN CAX LNP sing 299 n n 
CAO CAP LNP sing 300 n n 
CAP CAQ LNP sing 301 n n 
CAQ CAV LNP sing 302 n n 
CAR CBF LNP doub 303 n n 
CAV CAY LNP sing 304 n n 
CAV CAZ LNP sing 305 n n 
CAZ CBA LNP sing 306 n n 
CBA CBB LNP sing 307 n n 
CBB CBC LNP sing 308 n n 
CBC CBD LNP sing 309 n n 
CBC CBE LNP sing 310 n n 
CBF CBG LNP sing 311 n n 
CBF CBH LNP sing 312 n n 
CBG CBH LNP sing 313 n n 
CAA HAA LNP sing 314 n n 
CAA HAAA LNP sing 315 n n 
CAB HAB LNP sing 316 n n 
CAF HAF LNP sing 317 n n 
CAF HAFA LNP sing 318 n n 
CAH HAH LNP sing 319 n n 
CAI HAI LNP sing 320 n n 
CAI HAIA LNP sing 321 n n 
CAJ HAJ LNP sing 322 n n 
CAK HAK LNP sing 323 n n 
CAK HAKA LNP sing 324 n n 
CAL HAL LNP sing 325 n n 
CAL HALA LNP sing 326 n n 
CAM HAM LNP sing 327 n n 
CAO HAO LNP sing 328 n n 
CAO HAOA LNP sing 329 n n 
CAP HAP LNP sing 330 n n 
CAP HAPA LNP sing 331 n n 
CAQ HAQ LNP sing 332 n n 
CAR HAR LNP sing 333 n n 
CAS HAS LNP sing 334 n n 
CAS HASA LNP sing 335 n n 
CAS HASB LNP sing 336 n n 
CAT HAT LNP sing 337 n n 
CAT HATA LNP sing 338 n n 
CAT HATB LNP sing 339 n n 
CAV HAV LNP sing 340 n n 
CAW HAW LNP sing 341 n n 
CAW HAWA LNP sing 342 n n 
CAW HAWB LNP sing 343 n n 
CAX HAX LNP sing 344 n n 
CAX HAXA LNP sing 345 n n 
CAX HAXB LNP sing 346 n n 
CAY HAY LNP sing 347 n n 
CAY HAYA LNP sing 348 n n 
CAY HAYB LNP sing 349 n n 
CAZ HAZ LNP sing 350 n n 
CAZ HAZA LNP sing 351 n n 
CBA HBA LNP sing 352 n n 
CBA HBAA LNP sing 353 n n 
CBB HBB LNP sing 354 n n 
CBB HBBA LNP sing 355 n n 
CBC HBC LNP sing 356 n n 
CBD HBD LNP sing 357 n n 
CBD HBDA LNP sing 358 n n 
CBD HBDB LNP sing 359 n n 
CBE HBE LNP sing 360 n n 
CBE HBEA LNP sing 361 n n 
CBE HBEB LNP sing 362 n n 
CBG HBG LNP sing 363 n n 
CBG HBGA LNP sing 364 n n 
CBH HBH LNP sing 365 n n 
CBH HBHA LNP sing 366 n n 
OBH HOBH LNP sing 367 n n 
#
_atom_sites.entry_id                     3P99 
_atom_sites.fract_transf_matrix[1][1]    0.016776 
_atom_sites.fract_transf_matrix[1][2]    0.002828 
_atom_sites.fract_transf_matrix[1][3]    0.005039 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012587 
_atom_sites.fract_transf_matrix[2][3]    0.004808 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 HEM A 1 482 480 HEM HEM . 
F 3 LNP A 1 490 490 LNP LNP . 
G 2 HEM B 1 482 480 HEM HEM . 
H 3 LNP B 1 490 490 LNP LNP . 
I 2 HEM C 1 482 480 HEM HEM . 
J 3 LNP C 1 490 490 LNP LNP . 
K 2 HEM D 1 482 480 HEM HEM . 
L 3 LNP D 1 490 490 LNP LNP . 
M 4 HOH A 1 3 3 HOH HOH . 
M 4 HOH A 2 8 8 HOH HOH . 
M 4 HOH A 3 12 12 HOH HOH . 
M 4 HOH A 4 18 18 HOH HOH . 
M 4 HOH A 5 21 21 HOH HOH . 
M 4 HOH A 6 28 28 HOH HOH . 
M 4 HOH A 7 483 29 HOH HOH . 
M 4 HOH A 8 484 30 HOH HOH . 
M 4 HOH A 9 485 34 HOH HOH . 
M 4 HOH A 10 486 35 HOH HOH . 
M 4 HOH A 11 487 37 HOH HOH . 
M 4 HOH A 12 488 39 HOH HOH . 
M 4 HOH A 13 489 40 HOH HOH . 
M 4 HOH A 14 491 50 HOH HOH . 
N 4 HOH B 1 2 2 HOH HOH . 
N 4 HOH B 2 5 5 HOH HOH . 
N 4 HOH B 3 6 6 HOH HOH . 
N 4 HOH B 4 7 7 HOH HOH . 
N 4 HOH B 5 9 9 HOH HOH . 
N 4 HOH B 6 10 10 HOH HOH . 
N 4 HOH B 7 11 11 HOH HOH . 
N 4 HOH B 8 22 22 HOH HOH . 
N 4 HOH B 9 483 31 HOH HOH . 
N 4 HOH B 10 484 36 HOH HOH . 
N 4 HOH B 11 485 38 HOH HOH . 
N 4 HOH B 12 486 42 HOH HOH . 
N 4 HOH B 13 487 43 HOH HOH . 
O 4 HOH C 1 13 13 HOH HOH . 
O 4 HOH C 2 14 14 HOH HOH . 
O 4 HOH C 3 17 17 HOH HOH . 
O 4 HOH C 4 19 19 HOH HOH . 
O 4 HOH C 5 20 20 HOH HOH . 
O 4 HOH C 6 23 23 HOH HOH . 
O 4 HOH C 7 27 27 HOH HOH . 
O 4 HOH C 8 483 32 HOH HOH . 
O 4 HOH C 9 484 33 HOH HOH . 
O 4 HOH C 10 485 41 HOH HOH . 
O 4 HOH C 11 486 46 HOH HOH . 
O 4 HOH C 12 487 48 HOH HOH . 
P 4 HOH D 1 1 1 HOH HOH . 
P 4 HOH D 2 4 4 HOH HOH . 
P 4 HOH D 3 15 15 HOH HOH . 
P 4 HOH D 4 16 16 HOH HOH . 
P 4 HOH D 5 24 24 HOH HOH . 
P 4 HOH D 6 25 25 HOH HOH . 
P 4 HOH D 7 26 26 HOH HOH . 
P 4 HOH D 8 483 44 HOH HOH . 
P 4 HOH D 9 484 45 HOH HOH . 
P 4 HOH D 10 485 47 HOH HOH . 
P 4 HOH D 11 486 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA LNP . . . J 3 10.244 6.178 12.446 1 75.28 ? CAA LNP 490 C 1 
HETATM 2 C CAB LNP . . . J 3 9.926 7.333 13.417 1 78.93 ? CAB LNP 490 C 1 
HETATM 3 C CAC LNP . . . J 3 10.974 7.568 14.473 1 75.7 ? CAC LNP 490 C 1 
HETATM 4 C CAD LNP . . . J 3 12.372 7.062 14.278 1 74.9 ? CAD LNP 490 C 1 
HETATM 5 C CAE LNP . . . J 3 12.597 6.862 12.805 1 75.51 ? CAE LNP 490 C 1 
HETATM 6 C CAF LNP . . . J 3 11.705 5.723 12.359 1 76.16 ? CAF LNP 490 C 1 
HETATM 7 C CAG LNP . . . J 3 8.606 7.022 14.122 1 77.46 ? CAG LNP 490 C 1 
HETATM 8 C CAH LNP . . . J 3 8.166 8.128 15.085 1 76.72 ? CAH LNP 490 C 1 
HETATM 9 C CAI LNP . . . J 3 9.324 8.96 15.641 1 75.9 ? CAI LNP 490 C 1 
HETATM 10 C CAJ LNP . . . J 3 10.631 8.208 15.594 1 75.6 ? CAJ LNP 490 C 1 
HETATM 11 C CAK LNP . . . J 3 8.79 5.723 14.885 1 73.69 ? CAK LNP 490 C 1 
HETATM 12 C CAL LNP . . . J 3 7.434 5.182 15.308 1 76.36 ? CAL LNP 490 C 1 
HETATM 13 C CAM LNP . . . J 3 6.568 6.286 15.911 1 77.29 ? CAM LNP 490 C 1 
HETATM 14 C CAN LNP . . . J 3 7.338 7.565 16.249 1 79.16 ? CAN LNP 490 C 1 
HETATM 15 C CAO LNP . . . J 3 13.497 8.006 14.673 1 77.44 ? CAO LNP 490 C 1 
HETATM 16 C CAP LNP . . . J 3 14.664 7.602 13.764 1 75.49 ? CAP LNP 490 C 1 
HETATM 17 C CAQ LNP . . . J 3 14.098 6.649 12.713 1 74.35 ? CAQ LNP 490 C 1 
HETATM 18 C CAR LNP . . . J 3 12.525 5.797 15.085 1 73.77 ? CAR LNP 490 C 1 
HETATM 19 C CAS LNP . . . J 3 12.24 8.135 12.052 1 74.4 ? CAS LNP 490 C 1 
HETATM 20 C CAT LNP . . . J 3 7.534 6.854 13.054 1 75.78 ? CAT LNP 490 C 1 
HETATM 21 C CAV LNP . . . J 3 14.648 6.93 11.321 1 76.36 ? CAV LNP 490 C 1 
HETATM 22 C CAW LNP . . . J 3 8.276 7.277 17.413 1 80.91 ? CAW LNP 490 C 1 
HETATM 23 C CAX LNP . . . J 3 6.339 8.638 16.657 1 81.22 ? CAX LNP 490 C 1 
HETATM 24 C CAY LNP . . . J 3 13.995 6.018 10.286 1 76.69 ? CAY LNP 490 C 1 
HETATM 25 C CAZ LNP . . . J 3 16.17 6.801 11.285 1 75.43 ? CAZ LNP 490 C 1 
HETATM 26 C CBA LNP . . . J 3 16.674 6.476 9.88 1 73.44 ? CBA LNP 490 C 1 
HETATM 27 C CBB LNP . . . J 3 17.933 7.269 9.54 1 70.39 ? CBB LNP 490 C 1 
HETATM 28 C CBC LNP . . . J 3 18.677 6.676 8.345 1 65.61 ? CBC LNP 490 C 1 
HETATM 29 C CBD LNP . . . J 3 19.194 7.761 7.406 1 53.37 ? CBD LNP 490 C 1 
HETATM 30 C CBE LNP . . . J 3 19.82 5.78 8.806 1 63.56 ? CBE LNP 490 C 1 
HETATM 31 C CBF LNP . . . J 3 12.503 5.901 16.421 1 75.3 ? CBF LNP 490 C 1 
HETATM 32 C CBG LNP . . . J 3 12.592 5.236 17.746 1 79.63 ? CBG LNP 490 C 1 
HETATM 33 C CBH LNP . . . J 3 12.411 6.791 17.607 1 75.21 ? CBH LNP 490 C 1 
HETATM 34 O OBH LNP . . . J 3 5.469 6.588 15.036 1 82.68 ? OBH LNP 490 C 1 
#
_model_server_stats.io_time_ms              32 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           34 
#