data_3PA5 # _model_server_result.job_id FkBUvvKEPWKPMEDoHnbCSw _model_server_result.datetime_utc '2024-11-22 20:11:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pa5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3PA5 # _exptl.entry_id 3PA5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 378.876 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(carbamoylamino)-5-(4-chlorophenyl)-N-[(3S)-piperidin-3-yl]thiophene-3-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.68 _cell.angle_gamma 90 _cell.entry_id 3PA5 _cell.length_a 44.84 _cell.length_b 65.85 _cell.length_c 58.25 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PA5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H19 Cl N4 O2 S' _chem_comp.formula_weight 378.876 _chem_comp.id C73 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(carbamoylamino)-5-(4-chlorophenyl)-N-[(3S)-piperidin-3-yl]thiophene-3-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S01 C05 C73 sing 70 n y S01 C02 C73 sing 71 n y C02 N06 C73 sing 72 n n C02 C03 C73 doub 73 n y C04 C03 C73 sing 74 n y C03 C10 C73 sing 75 n n C05 C04 C73 doub 76 n y C04 H04 C73 sing 77 n n C19 C05 C73 sing 78 n y C07 N06 C73 sing 79 n n N06 HN06 C73 sing 80 n n O09 C07 C73 doub 81 n n C07 N08 C73 sing 82 n n N08 HN08 C73 sing 83 n n N08 HN0A C73 sing 84 n n C10 O11 C73 doub 85 n n C10 N12 C73 sing 86 n n N12 C13 C73 sing 87 n n N12 HN12 C73 sing 88 n n C13 C18 C73 sing 89 n n C13 C14 C73 sing 90 n n C13 H13 C73 sing 91 n n C14 N15 C73 sing 92 n n C14 H14 C73 sing 93 n n C14 H14A C73 sing 94 n n N15 C16 C73 sing 95 n n N15 HN15 C73 sing 96 n n C17 C16 C73 sing 97 n n C16 H16 C73 sing 98 n n C16 H16A C73 sing 99 n n C18 C17 C73 sing 100 n n C17 H17 C73 sing 101 n n C17 H17A C73 sing 102 n n C18 H18 C73 sing 103 n n C18 H18A C73 sing 104 n n C20 C19 C73 doub 105 n y C19 C24 C73 sing 106 n y C21 C20 C73 sing 107 n y C20 H20 C73 sing 108 n n C21 C22 C73 doub 109 n y C21 H21 C73 sing 110 n n CL25 C22 C73 sing 111 n n C22 C23 C73 sing 112 n y C23 C24 C73 doub 113 n y C23 H23 C73 sing 114 n n C24 H24 C73 sing 115 n n # _atom_sites.entry_id 3PA5 _atom_sites.fract_transf_matrix[1][1] 0.022302 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001826 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015186 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017225 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 C73 A 1 1 1 C73 C73 . C 3 GOL A 1 275 275 GOL GOL . D 3 GOL A 1 276 276 GOL GOL . E 3 GOL A 1 277 277 GOL GOL . F 4 HOH A 1 278 278 HOH HOH . F 4 HOH A 2 279 279 HOH HOH . F 4 HOH A 3 280 280 HOH HOH . F 4 HOH A 4 281 281 HOH HOH . F 4 HOH A 5 282 282 HOH HOH . F 4 HOH A 6 283 283 HOH HOH . F 4 HOH A 7 284 284 HOH HOH . F 4 HOH A 8 285 285 HOH HOH . F 4 HOH A 9 286 286 HOH HOH . F 4 HOH A 10 287 287 HOH HOH . F 4 HOH A 11 288 288 HOH HOH . F 4 HOH A 12 289 289 HOH HOH . F 4 HOH A 13 290 290 HOH HOH . F 4 HOH A 14 291 291 HOH HOH . F 4 HOH A 15 292 292 HOH HOH . F 4 HOH A 16 293 293 HOH HOH . F 4 HOH A 17 294 294 HOH HOH . F 4 HOH A 18 295 295 HOH HOH . F 4 HOH A 19 296 296 HOH HOH . F 4 HOH A 20 297 297 HOH HOH . F 4 HOH A 21 298 298 HOH HOH . F 4 HOH A 22 299 299 HOH HOH . F 4 HOH A 23 300 300 HOH HOH . F 4 HOH A 24 301 301 HOH HOH . F 4 HOH A 25 302 302 HOH HOH . F 4 HOH A 26 303 303 HOH HOH . F 4 HOH A 27 304 304 HOH HOH . F 4 HOH A 28 305 305 HOH HOH . F 4 HOH A 29 306 306 HOH HOH . F 4 HOH A 30 307 307 HOH HOH . F 4 HOH A 31 308 308 HOH HOH . F 4 HOH A 32 309 309 HOH HOH . F 4 HOH A 33 310 310 HOH HOH . F 4 HOH A 34 311 311 HOH HOH . F 4 HOH A 35 312 312 HOH HOH . F 4 HOH A 36 313 313 HOH HOH . F 4 HOH A 37 314 314 HOH HOH . F 4 HOH A 38 315 315 HOH HOH . F 4 HOH A 39 316 316 HOH HOH . F 4 HOH A 40 317 317 HOH HOH . F 4 HOH A 41 318 318 HOH HOH . F 4 HOH A 42 319 319 HOH HOH . F 4 HOH A 43 320 320 HOH HOH . F 4 HOH A 44 321 321 HOH HOH . F 4 HOH A 45 322 322 HOH HOH . F 4 HOH A 46 323 323 HOH HOH . F 4 HOH A 47 324 324 HOH HOH . F 4 HOH A 48 325 325 HOH HOH . F 4 HOH A 49 326 326 HOH HOH . F 4 HOH A 50 327 327 HOH HOH . F 4 HOH A 51 328 328 HOH HOH . F 4 HOH A 52 329 329 HOH HOH . F 4 HOH A 53 330 330 HOH HOH . F 4 HOH A 54 331 331 HOH HOH . F 4 HOH A 55 332 332 HOH HOH . F 4 HOH A 56 333 333 HOH HOH . F 4 HOH A 57 334 334 HOH HOH . F 4 HOH A 58 335 335 HOH HOH . F 4 HOH A 59 336 336 HOH HOH . F 4 HOH A 60 337 337 HOH HOH . F 4 HOH A 61 338 338 HOH HOH . F 4 HOH A 62 339 339 HOH HOH . F 4 HOH A 63 340 340 HOH HOH . F 4 HOH A 64 341 341 HOH HOH . F 4 HOH A 65 342 342 HOH HOH . F 4 HOH A 66 343 343 HOH HOH . F 4 HOH A 67 344 344 HOH HOH . F 4 HOH A 68 345 345 HOH HOH . F 4 HOH A 69 346 346 HOH HOH . F 4 HOH A 70 347 347 HOH HOH . F 4 HOH A 71 348 348 HOH HOH . F 4 HOH A 72 349 349 HOH HOH . F 4 HOH A 73 350 350 HOH HOH . F 4 HOH A 74 351 351 HOH HOH . F 4 HOH A 75 352 352 HOH HOH . F 4 HOH A 76 353 353 HOH HOH . F 4 HOH A 77 354 354 HOH HOH . F 4 HOH A 78 355 355 HOH HOH . F 4 HOH A 79 356 356 HOH HOH . F 4 HOH A 80 357 357 HOH HOH . F 4 HOH A 81 358 358 HOH HOH . F 4 HOH A 82 359 359 HOH HOH . F 4 HOH A 83 360 360 HOH HOH . F 4 HOH A 84 361 361 HOH HOH . F 4 HOH A 85 362 362 HOH HOH . F 4 HOH A 86 363 363 HOH HOH . F 4 HOH A 87 364 364 HOH HOH . F 4 HOH A 88 365 365 HOH HOH . F 4 HOH A 89 366 366 HOH HOH . F 4 HOH A 90 367 367 HOH HOH . F 4 HOH A 91 368 368 HOH HOH . F 4 HOH A 92 369 369 HOH HOH . F 4 HOH A 93 370 370 HOH HOH . F 4 HOH A 94 371 371 HOH HOH . F 4 HOH A 95 372 372 HOH HOH . F 4 HOH A 96 373 373 HOH HOH . F 4 HOH A 97 374 374 HOH HOH . F 4 HOH A 98 375 375 HOH HOH . F 4 HOH A 99 376 376 HOH HOH . F 4 HOH A 100 377 377 HOH HOH . F 4 HOH A 101 378 378 HOH HOH . F 4 HOH A 102 379 379 HOH HOH . F 4 HOH A 103 380 380 HOH HOH . F 4 HOH A 104 381 381 HOH HOH . F 4 HOH A 105 382 382 HOH HOH . F 4 HOH A 106 383 383 HOH HOH . F 4 HOH A 107 384 384 HOH HOH . F 4 HOH A 108 385 385 HOH HOH . F 4 HOH A 109 386 386 HOH HOH . F 4 HOH A 110 387 387 HOH HOH . F 4 HOH A 111 388 388 HOH HOH . F 4 HOH A 112 389 389 HOH HOH . F 4 HOH A 113 390 390 HOH HOH . F 4 HOH A 114 391 391 HOH HOH . F 4 HOH A 115 392 392 HOH HOH . F 4 HOH A 116 393 393 HOH HOH . F 4 HOH A 117 394 394 HOH HOH . F 4 HOH A 118 395 395 HOH HOH . F 4 HOH A 119 396 396 HOH HOH . F 4 HOH A 120 397 397 HOH HOH . F 4 HOH A 121 398 398 HOH HOH . F 4 HOH A 122 399 399 HOH HOH . F 4 HOH A 123 400 400 HOH HOH . F 4 HOH A 124 401 401 HOH HOH . F 4 HOH A 125 402 402 HOH HOH . F 4 HOH A 126 403 403 HOH HOH . F 4 HOH A 127 404 404 HOH HOH . F 4 HOH A 128 405 405 HOH HOH . F 4 HOH A 129 406 406 HOH HOH . F 4 HOH A 130 407 407 HOH HOH . F 4 HOH A 131 408 408 HOH HOH . F 4 HOH A 132 409 409 HOH HOH . F 4 HOH A 133 410 410 HOH HOH . F 4 HOH A 134 411 411 HOH HOH . F 4 HOH A 135 412 412 HOH HOH . F 4 HOH A 136 413 413 HOH HOH . F 4 HOH A 137 414 414 HOH HOH . F 4 HOH A 138 415 415 HOH HOH . F 4 HOH A 139 416 416 HOH HOH . F 4 HOH A 140 417 417 HOH HOH . F 4 HOH A 141 418 418 HOH HOH . F 4 HOH A 142 419 419 HOH HOH . F 4 HOH A 143 420 420 HOH HOH . F 4 HOH A 144 421 421 HOH HOH . F 4 HOH A 145 422 422 HOH HOH . F 4 HOH A 146 423 423 HOH HOH . F 4 HOH A 147 424 424 HOH HOH . F 4 HOH A 148 425 425 HOH HOH . F 4 HOH A 149 426 426 HOH HOH . F 4 HOH A 150 427 427 HOH HOH . F 4 HOH A 151 428 428 HOH HOH . F 4 HOH A 152 429 429 HOH HOH . F 4 HOH A 153 430 430 HOH HOH . F 4 HOH A 154 431 431 HOH HOH . F 4 HOH A 155 432 432 HOH HOH . F 4 HOH A 156 433 433 HOH HOH . F 4 HOH A 157 434 434 HOH HOH . F 4 HOH A 158 435 435 HOH HOH . F 4 HOH A 159 436 436 HOH HOH . F 4 HOH A 160 437 437 HOH HOH . F 4 HOH A 161 438 438 HOH HOH . F 4 HOH A 162 439 439 HOH HOH . F 4 HOH A 163 440 440 HOH HOH . F 4 HOH A 164 441 441 HOH HOH . F 4 HOH A 165 442 442 HOH HOH . F 4 HOH A 166 443 443 HOH HOH . F 4 HOH A 167 444 444 HOH HOH . F 4 HOH A 168 445 445 HOH HOH . F 4 HOH A 169 446 446 HOH HOH . F 4 HOH A 170 447 447 HOH HOH . F 4 HOH A 171 448 448 HOH HOH . F 4 HOH A 172 449 449 HOH HOH . F 4 HOH A 173 450 450 HOH HOH . F 4 HOH A 174 451 451 HOH HOH . F 4 HOH A 175 452 452 HOH HOH . F 4 HOH A 176 453 453 HOH HOH . F 4 HOH A 177 454 454 HOH HOH . F 4 HOH A 178 455 455 HOH HOH . F 4 HOH A 179 456 456 HOH HOH . F 4 HOH A 180 457 457 HOH HOH . F 4 HOH A 181 458 458 HOH HOH . F 4 HOH A 182 459 459 HOH HOH . F 4 HOH A 183 460 460 HOH HOH . F 4 HOH A 184 461 461 HOH HOH . F 4 HOH A 185 462 462 HOH HOH . F 4 HOH A 186 463 463 HOH HOH . F 4 HOH A 187 464 464 HOH HOH . F 4 HOH A 188 465 465 HOH HOH . F 4 HOH A 189 466 466 HOH HOH . F 4 HOH A 190 467 467 HOH HOH . F 4 HOH A 191 468 468 HOH HOH . F 4 HOH A 192 469 469 HOH HOH . F 4 HOH A 193 470 470 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S01 C73 . . . B 2 17.589 -0.946 9.038 1 28.97 ? S01 C73 1 A 1 HETATM 2 C C02 C73 . . . B 2 16.389 -1.56 10.086 1 27.01 ? C02 C73 1 A 1 HETATM 3 C C03 C73 . . . B 2 16.859 -2.589 10.849 1 25.71 ? C03 C73 1 A 1 HETATM 4 C C04 C73 . . . B 2 18.195 -2.904 10.527 1 27.53 ? C04 C73 1 A 1 HETATM 5 C C05 C73 . . . B 2 18.724 -2.073 9.53 1 28.23 ? C05 C73 1 A 1 HETATM 6 N N06 C73 . . . B 2 15.117 -1.014 10.186 1 25.01 ? N06 C73 1 A 1 HETATM 7 C C07 C73 . . . B 2 14.672 0.038 9.482 1 26.4 ? C07 C73 1 A 1 HETATM 8 N N08 C73 . . . B 2 13.384 0.381 9.794 1 27.63 ? N08 C73 1 A 1 HETATM 9 O O09 C73 . . . B 2 15.317 0.645 8.603 1 27.89 ? O09 C73 1 A 1 HETATM 10 C C10 C73 . . . B 2 15.987 -3.212 11.827 1 24.07 ? C10 C73 1 A 1 HETATM 11 O O11 C73 . . . B 2 14.851 -2.84 11.922 1 24.28 ? O11 C73 1 A 1 HETATM 12 N N12 C73 . . . B 2 16.534 -4.249 12.544 1 25.23 ? N12 C73 1 A 1 HETATM 13 C C13 C73 . . . B 2 15.762 -4.894 13.628 1 28.11 ? C13 C73 1 A 1 HETATM 14 C C14 C73 . . . B 2 16.118 -3.977 14.878 1 28.16 ? C14 C73 1 A 1 HETATM 15 N N15 C73 . . . B 2 15.552 -4.476 16.166 1 27.23 ? N15 C73 1 A 1 HETATM 16 C C16 C73 . . . B 2 16.032 -5.827 16.47 1 29.58 ? C16 C73 1 A 1 HETATM 17 C C17 C73 . . . B 2 15.749 -6.804 15.32 1 29.99 ? C17 C73 1 A 1 HETATM 18 C C18 C73 . . . B 2 16.303 -6.279 13.959 1 29.58 ? C18 C73 1 A 1 HETATM 19 C C19 C73 . . . B 2 20.067 -2.067 8.98 1 31.39 ? C19 C73 1 A 1 HETATM 20 C C20 C73 . . . B 2 20.548 -0.953 8.274 1 33.46 ? C20 C73 1 A 1 HETATM 21 C C21 C73 . . . B 2 21.832 -0.938 7.777 1 36.66 ? C21 C73 1 A 1 HETATM 22 C C22 C73 . . . B 2 22.678 -2.022 8.001 1 41.41 ? C22 C73 1 A 1 HETATM 23 C C23 C73 . . . B 2 22.226 -3.124 8.717 1 38.32 ? C23 C73 1 A 1 HETATM 24 C C24 C73 . . . B 2 20.923 -3.136 9.213 1 35.15 ? C24 C73 1 A 1 HETATM 25 CL CL25 C73 . . . B 2 24.294 -2.01 7.369 1 49.85 ? CL25 C73 1 A 1 # _model_server_stats.io_time_ms 58 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 25 #