data_3PAO
#
_model_server_result.job_id            Ptxc_dG1HleE1cjisvTnpg 
_model_server_result.datetime_utc      '2024-11-04 22:56:34' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pao 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":328}' 
#
_entry.id    3PAO 
#
_exptl.entry_id    3PAO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              135.127 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PAO 
_cell.length_a            44.637 
_cell.length_b            73.99 
_cell.length_c            178.012 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PAO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 230 A LEU 230 1_555 A N MSE 231 A MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale2 A C MSE 231 A MSE 231 1_555 A N ARG 232 A ARG 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale3 A C ASP 256 A ASP 256 1_555 A N MSE 257 A MSE 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C MSE 257 A MSE 257 1_555 A N SER 258 A SER 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 A C ASP 264 A ASP 264 1_555 A N MSE 265 A MSE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C MSE 265 A MSE 265 1_555 A N LEU 266 A LEU 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale7 A C GLY 298 A GLY 298 1_555 A N MSE 299 A MSE 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale8 A C MSE 299 A MSE 299 1_555 A N THR 300 A THR 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 B C LEU 230 B LEU 230 1_555 B N MSE 231 B MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale10 B C MSE 231 B MSE 231 1_555 B N ARG 232 B ARG 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale11 B C ASP 256 B ASP 256 1_555 B N MSE 257 B MSE 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale12 B C MSE 257 B MSE 257 1_555 B N SER 258 B SER 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale13 B C ASP 264 B ASP 264 1_555 B N MSE 265 B MSE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale14 B C MSE 265 B MSE 265 1_555 B N LEU 266 B LEU 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale15 B C GLY 298 B GLY 298 1_555 B N MSE 299 B MSE 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale16 B C MSE 299 B MSE 299 1_555 B N THR 300 B THR 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
metalc ? metalc1 A NE2 HIS 16 A HIS 16 1_555 C ZN ZN . A ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc2 A NE2 HIS 18 A HIS 18 1_555 C ZN ZN . A ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? 
metalc ? metalc3 A NE2 HIS 196 A HIS 196 1_555 C ZN ZN . A ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? 
metalc ? metalc4 A OD1 ASP 277 A ASP 277 1_555 C ZN ZN . A ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? 
metalc ? metalc5 C ZN ZN . A ZN 327 1_555 D N6 ADE . A ADE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? 
metalc ? metalc6 B NE2 HIS 16 B HIS 16 1_555 E ZN ZN . B ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? 
metalc ? metalc7 B NE2 HIS 18 B HIS 18 1_555 E ZN ZN . B ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc8 B NE2 HIS 196 B HIS 196 1_555 E ZN ZN . B ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc9 E ZN ZN . B ZN 327 1_555 F N6 ADE . B ADE 328 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
#
_chem_comp.formula           'C5 H5 N5' 
_chem_comp.formula_weight    135.127 
_chem_comp.id                ADE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N9 C8 ADE sing 1 n y 
N9 C4 ADE sing 2 n y 
N9 HN9 ADE sing 3 n n 
C8 N7 ADE doub 4 n y 
C8 H8 ADE sing 5 n n 
N7 C5 ADE sing 6 n y 
C5 C6 ADE sing 7 n y 
C5 C4 ADE doub 8 n y 
C6 N6 ADE sing 9 n n 
C6 N1 ADE doub 10 n y 
N6 HN61 ADE sing 11 n n 
N6 HN62 ADE sing 12 n n 
N1 C2 ADE sing 13 n y 
C2 N3 ADE doub 14 n y 
C2 H2 ADE sing 15 n n 
N3 C4 ADE sing 16 n y 
#
_atom_sites.entry_id                     3PAO 
_atom_sites.fract_transf_matrix[1][1]    0.022403 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013515 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005618 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 327 1 ZN ZN . 
D 3 ADE A 1 328 1 ADE ADE . 
E 2 ZN B 1 327 2 ZN ZN . 
F 3 ADE B 1 328 1 ADE ADE . 
G 4 HOH A 1 329 3 HOH HOH . 
G 4 HOH A 2 330 4 HOH HOH . 
G 4 HOH A 3 331 7 HOH HOH . 
G 4 HOH A 4 332 11 HOH HOH . 
G 4 HOH A 5 333 14 HOH HOH . 
G 4 HOH A 6 334 17 HOH HOH . 
G 4 HOH A 7 335 23 HOH HOH . 
G 4 HOH A 8 336 24 HOH HOH . 
G 4 HOH A 9 337 25 HOH HOH . 
G 4 HOH A 10 338 28 HOH HOH . 
G 4 HOH A 11 339 29 HOH HOH . 
G 4 HOH A 12 340 31 HOH HOH . 
G 4 HOH A 13 341 34 HOH HOH . 
G 4 HOH A 14 342 36 HOH HOH . 
G 4 HOH A 15 343 38 HOH HOH . 
G 4 HOH A 16 344 39 HOH HOH . 
G 4 HOH A 17 345 41 HOH HOH . 
G 4 HOH A 18 346 50 HOH HOH . 
G 4 HOH A 19 347 56 HOH HOH . 
G 4 HOH A 20 348 57 HOH HOH . 
G 4 HOH A 21 349 61 HOH HOH . 
G 4 HOH A 22 350 62 HOH HOH . 
G 4 HOH A 23 351 64 HOH HOH . 
G 4 HOH A 24 352 66 HOH HOH . 
G 4 HOH A 25 353 67 HOH HOH . 
G 4 HOH A 26 354 68 HOH HOH . 
G 4 HOH A 27 355 69 HOH HOH . 
G 4 HOH A 28 356 72 HOH HOH . 
G 4 HOH A 29 357 73 HOH HOH . 
G 4 HOH A 30 358 78 HOH HOH . 
G 4 HOH A 31 359 80 HOH HOH . 
G 4 HOH A 32 360 81 HOH HOH . 
G 4 HOH A 33 361 83 HOH HOH . 
G 4 HOH A 34 362 85 HOH HOH . 
G 4 HOH A 35 363 87 HOH HOH . 
G 4 HOH A 36 364 92 HOH HOH . 
G 4 HOH A 37 365 93 HOH HOH . 
G 4 HOH A 38 366 103 HOH HOH . 
G 4 HOH A 39 367 106 HOH HOH . 
G 4 HOH A 40 368 108 HOH HOH . 
G 4 HOH A 41 369 109 HOH HOH . 
G 4 HOH A 42 370 110 HOH HOH . 
G 4 HOH A 43 371 111 HOH HOH . 
G 4 HOH A 44 372 113 HOH HOH . 
G 4 HOH A 45 373 114 HOH HOH . 
G 4 HOH A 46 374 115 HOH HOH . 
G 4 HOH A 47 375 116 HOH HOH . 
G 4 HOH A 48 376 117 HOH HOH . 
G 4 HOH A 49 377 118 HOH HOH . 
G 4 HOH A 50 378 119 HOH HOH . 
G 4 HOH A 51 379 120 HOH HOH . 
G 4 HOH A 52 380 122 HOH HOH . 
G 4 HOH A 53 381 123 HOH HOH . 
G 4 HOH A 54 382 124 HOH HOH . 
G 4 HOH A 55 383 125 HOH HOH . 
G 4 HOH A 56 384 126 HOH HOH . 
G 4 HOH A 57 385 149 HOH HOH . 
G 4 HOH A 58 386 150 HOH HOH . 
G 4 HOH A 59 387 151 HOH HOH . 
G 4 HOH A 60 388 152 HOH HOH . 
G 4 HOH A 61 389 153 HOH HOH . 
G 4 HOH A 62 390 154 HOH HOH . 
G 4 HOH A 63 391 155 HOH HOH . 
G 4 HOH A 64 392 156 HOH HOH . 
G 4 HOH A 65 393 157 HOH HOH . 
G 4 HOH A 66 394 158 HOH HOH . 
G 4 HOH A 67 395 159 HOH HOH . 
G 4 HOH A 68 396 160 HOH HOH . 
G 4 HOH A 69 397 168 HOH HOH . 
G 4 HOH A 70 398 170 HOH HOH . 
G 4 HOH A 71 399 171 HOH HOH . 
G 4 HOH A 72 400 172 HOH HOH . 
G 4 HOH A 73 401 176 HOH HOH . 
H 4 HOH B 1 329 1 HOH HOH . 
H 4 HOH B 2 330 2 HOH HOH . 
H 4 HOH B 3 331 8 HOH HOH . 
H 4 HOH B 4 332 9 HOH HOH . 
H 4 HOH B 5 333 10 HOH HOH . 
H 4 HOH B 6 334 12 HOH HOH . 
H 4 HOH B 7 335 13 HOH HOH . 
H 4 HOH B 8 336 15 HOH HOH . 
H 4 HOH B 9 337 16 HOH HOH . 
H 4 HOH B 10 338 18 HOH HOH . 
H 4 HOH B 11 339 19 HOH HOH . 
H 4 HOH B 12 340 20 HOH HOH . 
H 4 HOH B 13 341 21 HOH HOH . 
H 4 HOH B 14 342 22 HOH HOH . 
H 4 HOH B 15 343 26 HOH HOH . 
H 4 HOH B 16 344 32 HOH HOH . 
H 4 HOH B 17 345 33 HOH HOH . 
H 4 HOH B 18 346 35 HOH HOH . 
H 4 HOH B 19 347 37 HOH HOH . 
H 4 HOH B 20 348 42 HOH HOH . 
H 4 HOH B 21 349 43 HOH HOH . 
H 4 HOH B 22 350 44 HOH HOH . 
H 4 HOH B 23 351 45 HOH HOH . 
H 4 HOH B 24 352 46 HOH HOH . 
H 4 HOH B 25 353 47 HOH HOH . 
H 4 HOH B 26 354 48 HOH HOH . 
H 4 HOH B 27 355 49 HOH HOH . 
H 4 HOH B 28 356 51 HOH HOH . 
H 4 HOH B 29 357 52 HOH HOH . 
H 4 HOH B 30 358 54 HOH HOH . 
H 4 HOH B 31 359 59 HOH HOH . 
H 4 HOH B 32 360 60 HOH HOH . 
H 4 HOH B 33 361 63 HOH HOH . 
H 4 HOH B 34 362 65 HOH HOH . 
H 4 HOH B 35 363 70 HOH HOH . 
H 4 HOH B 36 364 71 HOH HOH . 
H 4 HOH B 37 365 74 HOH HOH . 
H 4 HOH B 38 366 75 HOH HOH . 
H 4 HOH B 39 367 76 HOH HOH . 
H 4 HOH B 40 368 77 HOH HOH . 
H 4 HOH B 41 369 79 HOH HOH . 
H 4 HOH B 42 370 82 HOH HOH . 
H 4 HOH B 43 371 86 HOH HOH . 
H 4 HOH B 44 372 89 HOH HOH . 
H 4 HOH B 45 373 91 HOH HOH . 
H 4 HOH B 46 374 95 HOH HOH . 
H 4 HOH B 47 375 96 HOH HOH . 
H 4 HOH B 48 376 97 HOH HOH . 
H 4 HOH B 49 377 98 HOH HOH . 
H 4 HOH B 50 378 99 HOH HOH . 
H 4 HOH B 51 379 100 HOH HOH . 
H 4 HOH B 52 380 101 HOH HOH . 
H 4 HOH B 53 381 104 HOH HOH . 
H 4 HOH B 54 382 105 HOH HOH . 
H 4 HOH B 55 383 107 HOH HOH . 
H 4 HOH B 56 384 112 HOH HOH . 
H 4 HOH B 57 385 121 HOH HOH . 
H 4 HOH B 58 386 127 HOH HOH . 
H 4 HOH B 59 387 128 HOH HOH . 
H 4 HOH B 60 388 129 HOH HOH . 
H 4 HOH B 61 389 130 HOH HOH . 
H 4 HOH B 62 390 131 HOH HOH . 
H 4 HOH B 63 391 132 HOH HOH . 
H 4 HOH B 64 392 133 HOH HOH . 
H 4 HOH B 65 393 134 HOH HOH . 
H 4 HOH B 66 394 135 HOH HOH . 
H 4 HOH B 67 395 136 HOH HOH . 
H 4 HOH B 68 396 137 HOH HOH . 
H 4 HOH B 69 397 138 HOH HOH . 
H 4 HOH B 70 398 139 HOH HOH . 
H 4 HOH B 71 399 140 HOH HOH . 
H 4 HOH B 72 400 141 HOH HOH . 
H 4 HOH B 73 401 142 HOH HOH . 
H 4 HOH B 74 402 143 HOH HOH . 
H 4 HOH B 75 403 144 HOH HOH . 
H 4 HOH B 76 404 145 HOH HOH . 
H 4 HOH B 77 405 146 HOH HOH . 
H 4 HOH B 78 406 147 HOH HOH . 
H 4 HOH B 79 407 161 HOH HOH . 
H 4 HOH B 80 408 162 HOH HOH . 
H 4 HOH B 81 409 163 HOH HOH . 
H 4 HOH B 82 410 165 HOH HOH . 
H 4 HOH B 83 411 166 HOH HOH . 
H 4 HOH B 84 412 167 HOH HOH . 
H 4 HOH B 85 413 169 HOH HOH . 
H 4 HOH B 86 414 173 HOH HOH . 
H 4 HOH B 87 415 174 HOH HOH . 
H 4 HOH B 88 416 175 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N9 ADE . . . F 3 38.377 27.794 82.042 1 21.44 ? N9 ADE 328 B 1 
HETATM 2 C C8 ADE . . . F 3 39.457 28.247 81.329 1 20.96 ? C8 ADE 328 B 1 
HETATM 3 N N7 ADE . . . F 3 39.906 27.391 80.442 1 20.94 ? N7 ADE 328 B 1 
HETATM 4 C C5 ADE . . . F 3 39.062 26.299 80.584 1 20.73 ? C5 ADE 328 B 1 
HETATM 5 C C6 ADE . . . F 3 38.995 25.055 79.933 1 21.52 ? C6 ADE 328 B 1 
HETATM 6 N N6 ADE . . . F 3 39.839 24.699 78.971 1 22.58 ? N6 ADE 328 B 1 
HETATM 7 N N1 ADE . . . F 3 38.03 24.186 80.308 1 22.38 ? N1 ADE 328 B 1 
HETATM 8 C C2 ADE . . . F 3 37.178 24.542 81.276 1 20.67 ? C2 ADE 328 B 1 
HETATM 9 N N3 ADE . . . F 3 37.137 25.689 81.959 1 21.69 ? N3 ADE 328 B 1 
HETATM 10 C C4 ADE . . . F 3 38.113 26.531 81.566 1 21.32 ? C4 ADE 328 B 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           270 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           10 
#