data_3PAQ
#
_model_server_result.job_id            Wx0oIeKuSQksOQDcc6ifkA 
_model_server_result.datetime_utc      '2024-11-22 04:31:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3paq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    3PAQ 
#
_exptl.entry_id    3PAQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              194.182 
_entity.id                          5 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl alpha-D-mannopyranoside' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3PAQ 
_cell.length_a            97.452 
_cell.length_b            97.452 
_cell.length_c            44.848 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PAQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 97.452 0 0 
3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 48.726 84.395908 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 55 A CYS 135 1_555 A SG CYS 146 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 124 A CYS 204 1_555 A SG CYS 138 A CYS 218 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
metalc ? metalc1 A OE1 GLU 91 A GLU 171 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc2 A OE2 GLU 91 A GLU 171 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.178 ? 
metalc ? metalc3 A OE1 GLU 115 A GLU 195 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? 
metalc ? metalc4 A OE1 GLU 122 A GLU 202 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
metalc ? metalc5 A O GLU 122 A GLU 202 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? 
metalc ? metalc6 A OD1 ASN 134 A ASN 214 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.504 ? 
metalc ? metalc7 A OD1 ASP 135 A ASP 215 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc8 A O ASP 135 A ASP 215 1_555 B CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
metalc ? metalc9 B CA CA . A CA 300 1_555 E O3 MMA . A MMA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc10 B CA CA . A CA 300 1_555 E O4 MMA . A MMA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.383 ? 
metalc ? metalc11 B CA CA . A CA 300 1_555 F O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? 
#
_chem_comp.formula           'C7 H14 O6' 
_chem_comp.formula_weight    194.182 
_chem_comp.id                MMA 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              'methyl alpha-D-mannopyranoside' 
_chem_comp.type              d-saccharide 
_chem_comp.pdbx_synonyms     'O1-METHYL-MANNOSE;methyl alpha-D-mannoside;methyl D-mannoside;methyl mannoside' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MMA sing 237 n n 
C1 O1 MMA sing 238 n n 
C1 O5 MMA sing 239 n n 
C1 H1 MMA sing 240 n n 
C2 C3 MMA sing 241 n n 
C2 O2 MMA sing 242 n n 
C2 H2 MMA sing 243 n n 
C3 C4 MMA sing 244 n n 
C3 O3 MMA sing 245 n n 
C3 H3 MMA sing 246 n n 
C4 C5 MMA sing 247 n n 
C4 O4 MMA sing 248 n n 
C4 H4 MMA sing 249 n n 
C5 C6 MMA sing 250 n n 
C5 O5 MMA sing 251 n n 
C5 H5 MMA sing 252 n n 
C6 O6 MMA sing 253 n n 
C6 H61 MMA sing 254 n n 
C6 H62 MMA sing 255 n n 
C7 O1 MMA sing 256 n n 
C7 H71 MMA sing 257 n n 
C7 H72 MMA sing 258 n n 
C7 H73 MMA sing 259 n n 
O2 HO2 MMA sing 260 n n 
O3 HO3 MMA sing 261 n n 
O4 HO4 MMA sing 262 n n 
O6 HO6 MMA sing 263 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
MMA DManp[1Me]a 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
MMA 1-methyl-a-D-mannopyranose 'COMMON NAME' GMML 1 
MMA o1-methyl-mannose 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
#
_atom_sites.entry_id                     3PAQ 
_atom_sites.fract_transf_matrix[1][1]    0.010261 
_atom_sites.fract_transf_matrix[1][2]    0.005924 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011849 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.022298 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CA A 1 300 300 CA CA . 
C 3 NA A 1 301 301 NA NA . 
D 4 SO4 A 1 302 302 SO4 SO4 . 
E 5 MMA A 1 501 501 MMA MMA . 
F 6 HOH A 1 502 502 HOH HOH . 
F 6 HOH A 2 503 503 HOH HOH . 
F 6 HOH A 3 504 504 HOH HOH . 
F 6 HOH A 4 505 505 HOH HOH . 
F 6 HOH A 5 506 506 HOH HOH . 
F 6 HOH A 6 507 507 HOH HOH . 
F 6 HOH A 7 508 508 HOH HOH . 
F 6 HOH A 8 509 509 HOH HOH . 
F 6 HOH A 9 510 510 HOH HOH . 
F 6 HOH A 10 511 511 HOH HOH . 
F 6 HOH A 11 512 512 HOH HOH . 
F 6 HOH A 12 513 513 HOH HOH . 
F 6 HOH A 13 514 514 HOH HOH . 
F 6 HOH A 14 515 515 HOH HOH . 
F 6 HOH A 15 516 516 HOH HOH . 
F 6 HOH A 16 517 517 HOH HOH . 
F 6 HOH A 17 518 518 HOH HOH . 
F 6 HOH A 18 519 519 HOH HOH . 
F 6 HOH A 19 520 520 HOH HOH . 
F 6 HOH A 20 521 521 HOH HOH . 
F 6 HOH A 21 522 522 HOH HOH . 
F 6 HOH A 22 523 523 HOH HOH . 
F 6 HOH A 23 524 524 HOH HOH . 
F 6 HOH A 24 525 525 HOH HOH . 
F 6 HOH A 25 526 526 HOH HOH . 
F 6 HOH A 26 527 527 HOH HOH . 
F 6 HOH A 27 528 528 HOH HOH . 
F 6 HOH A 28 529 529 HOH HOH . 
F 6 HOH A 29 530 530 HOH HOH . 
F 6 HOH A 30 531 531 HOH HOH . 
F 6 HOH A 31 532 532 HOH HOH . 
F 6 HOH A 32 533 533 HOH HOH . 
F 6 HOH A 33 534 534 HOH HOH . 
F 6 HOH A 34 535 535 HOH HOH . 
F 6 HOH A 35 536 536 HOH HOH . 
F 6 HOH A 36 537 537 HOH HOH . 
F 6 HOH A 37 538 538 HOH HOH . 
F 6 HOH A 38 539 539 HOH HOH . 
F 6 HOH A 39 540 540 HOH HOH . 
F 6 HOH A 40 541 541 HOH HOH . 
F 6 HOH A 41 542 542 HOH HOH . 
F 6 HOH A 42 543 543 HOH HOH . 
F 6 HOH A 43 544 544 HOH HOH . 
F 6 HOH A 44 545 545 HOH HOH . 
F 6 HOH A 45 546 546 HOH HOH . 
F 6 HOH A 46 547 547 HOH HOH . 
F 6 HOH A 47 548 548 HOH HOH . 
F 6 HOH A 48 549 549 HOH HOH . 
F 6 HOH A 49 550 550 HOH HOH . 
F 6 HOH A 50 551 551 HOH HOH . 
F 6 HOH A 51 552 552 HOH HOH . 
F 6 HOH A 52 553 553 HOH HOH . 
F 6 HOH A 53 554 554 HOH HOH . 
F 6 HOH A 54 555 555 HOH HOH . 
F 6 HOH A 55 556 556 HOH HOH . 
F 6 HOH A 56 557 557 HOH HOH . 
F 6 HOH A 57 558 558 HOH HOH . 
F 6 HOH A 58 559 559 HOH HOH . 
F 6 HOH A 59 560 560 HOH HOH . 
F 6 HOH A 60 561 561 HOH HOH . 
F 6 HOH A 61 562 562 HOH HOH . 
F 6 HOH A 62 563 563 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MMA . . . E 5 82.277 35.091 52.75 1 64.91 ? C1 MMA 501 A 1 
HETATM 2 C C2 MMA . . . E 5 81.873 34.469 51.404 1 63.6 ? C2 MMA 501 A 1 
HETATM 3 C C3 MMA . . . E 5 82.627 35.143 50.251 1 62.22 ? C3 MMA 501 A 1 
HETATM 4 C C4 MMA . . . E 5 82.364 36.642 50.297 1 63.27 ? C4 MMA 501 A 1 
HETATM 5 C C5 MMA . . . E 5 82.795 37.198 51.652 1 64.67 ? C5 MMA 501 A 1 
HETATM 6 C C6 MMA . . . E 5 82.478 38.674 51.74 1 65.83 ? C6 MMA 501 A 1 
HETATM 7 C C7 MMA . . . E 5 83.795 33.932 54.183 1 67.19 ? C7 MMA 501 A 1 
HETATM 8 O O1 MMA . . . E 5 83.607 34.804 53.047 1 66.66 ? O1 MMA 501 A 1 
HETATM 9 O O2 MMA . . . E 5 80.477 34.636 51.213 1 62.79 ? O2 MMA 501 A 1 
HETATM 10 O O3 MMA . . . E 5 82.169 34.627 49.015 1 59.8 ? O3 MMA 501 A 1 
HETATM 11 O O4 MMA . . . E 5 83.064 37.31 49.25 1 61.19 ? O4 MMA 501 A 1 
HETATM 12 O O5 MMA . . . E 5 82.087 36.526 52.733 1 65.27 ? O5 MMA 501 A 1 
HETATM 13 O O6 MMA . . . E 5 81.14 38.888 52.151 1 65.9 ? O6 MMA 501 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           13 
#