data_3PB5 # _model_server_result.job_id OYZBwVsbnvs-1fJQ8d_9Yg _model_server_result.datetime_utc '2024-11-13 01:21:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":3001}' # _entry.id 3PB5 # _exptl.entry_id 3PB5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.45 _cell.angle_gamma 90 _cell.entry_id 3PB5 _cell.length_a 45.3 _cell.length_b 72.99 _cell.length_c 52.45 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.018 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 157 n n C1 C2 GOL sing 158 n n C1 H11 GOL sing 159 n n C1 H12 GOL sing 160 n n O1 HO1 GOL sing 161 n n C2 O2 GOL sing 162 n n C2 C3 GOL sing 163 n n C2 H2 GOL sing 164 n n O2 HO2 GOL sing 165 n n C3 O3 GOL sing 166 n n C3 H31 GOL sing 167 n n C3 H32 GOL sing 168 n n O3 HO3 GOL sing 169 n n # _atom_sites.entry_id 3PB5 _atom_sites.fract_transf_matrix[1][1] 0.022075 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007796 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013701 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F63 A 1 1001 1001 F63 F63 . C 3 GOL A 1 3001 3001 GOL GOL . D 4 HOH A 1 4001 4001 HOH HOH . D 4 HOH A 2 4002 4002 HOH HOH . D 4 HOH A 3 4003 4003 HOH HOH . D 4 HOH A 4 4004 4004 HOH HOH . D 4 HOH A 5 4005 4005 HOH HOH . D 4 HOH A 6 4006 4006 HOH HOH . D 4 HOH A 7 4007 4007 HOH HOH . D 4 HOH A 8 4008 4008 HOH HOH . D 4 HOH A 9 4009 4009 HOH HOH . D 4 HOH A 10 4010 4010 HOH HOH . D 4 HOH A 11 4011 4011 HOH HOH . D 4 HOH A 12 4012 4012 HOH HOH . D 4 HOH A 13 4013 4013 HOH HOH . D 4 HOH A 14 4014 4014 HOH HOH . D 4 HOH A 15 4015 4015 HOH HOH . D 4 HOH A 16 4016 4016 HOH HOH . D 4 HOH A 17 4017 4017 HOH HOH . D 4 HOH A 18 4018 4018 HOH HOH . D 4 HOH A 19 4019 4019 HOH HOH . D 4 HOH A 20 4020 4020 HOH HOH . D 4 HOH A 21 4021 4021 HOH HOH . D 4 HOH A 22 4022 4022 HOH HOH . D 4 HOH A 23 4023 4023 HOH HOH . D 4 HOH A 24 4024 4024 HOH HOH . D 4 HOH A 25 4025 4025 HOH HOH . D 4 HOH A 26 4026 4026 HOH HOH . D 4 HOH A 27 4027 4027 HOH HOH . D 4 HOH A 28 4028 4028 HOH HOH . D 4 HOH A 29 4029 4029 HOH HOH . D 4 HOH A 30 4030 4030 HOH HOH . D 4 HOH A 31 4031 4031 HOH HOH . D 4 HOH A 32 4032 4032 HOH HOH . D 4 HOH A 33 4033 4033 HOH HOH . D 4 HOH A 34 4034 4034 HOH HOH . D 4 HOH A 35 4035 4035 HOH HOH . D 4 HOH A 36 4036 4036 HOH HOH . D 4 HOH A 37 4037 4037 HOH HOH . D 4 HOH A 38 4038 4038 HOH HOH . D 4 HOH A 39 4039 4039 HOH HOH . D 4 HOH A 40 4040 4040 HOH HOH . D 4 HOH A 41 4041 4041 HOH HOH . D 4 HOH A 42 4042 4042 HOH HOH . D 4 HOH A 43 4043 4043 HOH HOH . D 4 HOH A 44 4044 4044 HOH HOH . D 4 HOH A 45 4045 4045 HOH HOH . D 4 HOH A 46 4046 4046 HOH HOH . D 4 HOH A 47 4047 4047 HOH HOH . D 4 HOH A 48 4048 4048 HOH HOH . D 4 HOH A 49 4049 4049 HOH HOH . D 4 HOH A 50 4050 4050 HOH HOH . D 4 HOH A 51 4051 4051 HOH HOH . D 4 HOH A 52 4052 4052 HOH HOH . D 4 HOH A 53 4053 4053 HOH HOH . D 4 HOH A 54 4054 4054 HOH HOH . D 4 HOH A 55 4055 4055 HOH HOH . D 4 HOH A 56 4056 4056 HOH HOH . D 4 HOH A 57 4057 4057 HOH HOH . D 4 HOH A 58 4058 4058 HOH HOH . D 4 HOH A 59 4059 4059 HOH HOH . D 4 HOH A 60 4060 4060 HOH HOH . D 4 HOH A 61 4061 4061 HOH HOH . D 4 HOH A 62 4062 4062 HOH HOH . D 4 HOH A 63 4063 4063 HOH HOH . D 4 HOH A 64 4064 4064 HOH HOH . D 4 HOH A 65 4065 4065 HOH HOH . D 4 HOH A 66 4066 4066 HOH HOH . D 4 HOH A 67 4067 4067 HOH HOH . D 4 HOH A 68 4068 4068 HOH HOH . D 4 HOH A 69 4069 4069 HOH HOH . D 4 HOH A 70 4070 4070 HOH HOH . D 4 HOH A 71 4071 4071 HOH HOH . D 4 HOH A 72 4072 4072 HOH HOH . D 4 HOH A 73 4073 4073 HOH HOH . D 4 HOH A 74 4074 4074 HOH HOH . D 4 HOH A 75 4075 4075 HOH HOH . D 4 HOH A 76 4076 4076 HOH HOH . D 4 HOH A 77 4077 4077 HOH HOH . D 4 HOH A 78 4078 4078 HOH HOH . D 4 HOH A 79 4079 4079 HOH HOH . D 4 HOH A 80 4080 4080 HOH HOH . D 4 HOH A 81 4081 4081 HOH HOH . D 4 HOH A 82 4082 4082 HOH HOH . D 4 HOH A 83 4083 4083 HOH HOH . D 4 HOH A 84 4084 4084 HOH HOH . D 4 HOH A 85 4085 4085 HOH HOH . D 4 HOH A 86 4086 4086 HOH HOH . D 4 HOH A 87 4087 4087 HOH HOH . D 4 HOH A 88 4088 4088 HOH HOH . D 4 HOH A 89 4089 4089 HOH HOH . D 4 HOH A 90 4090 4090 HOH HOH . D 4 HOH A 91 4091 4091 HOH HOH . D 4 HOH A 92 4092 4092 HOH HOH . D 4 HOH A 93 4093 4093 HOH HOH . D 4 HOH A 94 4094 4094 HOH HOH . D 4 HOH A 95 4095 4095 HOH HOH . D 4 HOH A 96 4096 4096 HOH HOH . D 4 HOH A 97 4097 4097 HOH HOH . D 4 HOH A 98 4098 4098 HOH HOH . D 4 HOH A 99 4099 4099 HOH HOH . D 4 HOH A 100 4100 4100 HOH HOH . D 4 HOH A 101 4101 4101 HOH HOH . D 4 HOH A 102 4102 4102 HOH HOH . D 4 HOH A 103 4103 4103 HOH HOH . D 4 HOH A 104 4104 4104 HOH HOH . D 4 HOH A 105 4105 4105 HOH HOH . D 4 HOH A 106 4106 4106 HOH HOH . D 4 HOH A 107 4107 4107 HOH HOH . D 4 HOH A 108 4108 4108 HOH HOH . D 4 HOH A 109 4109 4109 HOH HOH . D 4 HOH A 110 4110 4110 HOH HOH . D 4 HOH A 111 4111 4111 HOH HOH . D 4 HOH A 112 4112 4112 HOH HOH . D 4 HOH A 113 4113 4113 HOH HOH . D 4 HOH A 114 4114 4114 HOH HOH . D 4 HOH A 115 4115 4115 HOH HOH . D 4 HOH A 116 4116 4116 HOH HOH . D 4 HOH A 117 4117 4117 HOH HOH . D 4 HOH A 118 4118 4118 HOH HOH . D 4 HOH A 119 4119 4119 HOH HOH . D 4 HOH A 120 4120 4120 HOH HOH . D 4 HOH A 121 4121 4121 HOH HOH . D 4 HOH A 122 4122 4122 HOH HOH . D 4 HOH A 123 4123 4123 HOH HOH . D 4 HOH A 124 4124 4124 HOH HOH . D 4 HOH A 125 4125 4125 HOH HOH . D 4 HOH A 126 4126 4126 HOH HOH . D 4 HOH A 127 4127 4127 HOH HOH . D 4 HOH A 128 4128 4128 HOH HOH . D 4 HOH A 129 4129 4129 HOH HOH . D 4 HOH A 130 4130 4130 HOH HOH . D 4 HOH A 131 4131 4131 HOH HOH . D 4 HOH A 132 4132 4132 HOH HOH . D 4 HOH A 133 4133 4133 HOH HOH . D 4 HOH A 134 4134 4134 HOH HOH . D 4 HOH A 135 4135 4135 HOH HOH . D 4 HOH A 136 4136 4136 HOH HOH . D 4 HOH A 137 4137 4137 HOH HOH . D 4 HOH A 138 4138 4138 HOH HOH . D 4 HOH A 139 4139 4139 HOH HOH . D 4 HOH A 140 4140 4140 HOH HOH . D 4 HOH A 141 4141 4141 HOH HOH . D 4 HOH A 142 4142 4142 HOH HOH . D 4 HOH A 143 4143 4143 HOH HOH . D 4 HOH A 144 4144 4144 HOH HOH . D 4 HOH A 145 4145 4145 HOH HOH . D 4 HOH A 146 4146 4146 HOH HOH . D 4 HOH A 147 4147 4147 HOH HOH . D 4 HOH A 148 4148 4148 HOH HOH . D 4 HOH A 149 4149 4149 HOH HOH . D 4 HOH A 150 4150 4150 HOH HOH . D 4 HOH A 151 4151 4151 HOH HOH . D 4 HOH A 152 4152 4152 HOH HOH . D 4 HOH A 153 4153 4153 HOH HOH . D 4 HOH A 154 4154 4154 HOH HOH . D 4 HOH A 155 4155 4155 HOH HOH . D 4 HOH A 156 4156 4156 HOH HOH . D 4 HOH A 157 4157 4157 HOH HOH . D 4 HOH A 158 4158 4158 HOH HOH . D 4 HOH A 159 4159 4159 HOH HOH . D 4 HOH A 160 4160 4160 HOH HOH . D 4 HOH A 161 4161 4161 HOH HOH . D 4 HOH A 162 4162 4162 HOH HOH . D 4 HOH A 163 4163 4163 HOH HOH . D 4 HOH A 164 4164 4164 HOH HOH . D 4 HOH A 165 4165 4165 HOH HOH . D 4 HOH A 166 4166 4166 HOH HOH . D 4 HOH A 167 4167 4167 HOH HOH . D 4 HOH A 168 4168 4168 HOH HOH . D 4 HOH A 169 4169 4169 HOH HOH . D 4 HOH A 170 4170 4170 HOH HOH . D 4 HOH A 171 4171 4171 HOH HOH . D 4 HOH A 172 4172 4172 HOH HOH . D 4 HOH A 173 4173 4173 HOH HOH . D 4 HOH A 174 4174 4174 HOH HOH . D 4 HOH A 175 4175 4175 HOH HOH . D 4 HOH A 176 4176 4176 HOH HOH . D 4 HOH A 177 4177 4177 HOH HOH . D 4 HOH A 178 4178 4178 HOH HOH . D 4 HOH A 179 4179 4179 HOH HOH . D 4 HOH A 180 4180 4180 HOH HOH . D 4 HOH A 181 4181 4181 HOH HOH . D 4 HOH A 182 4182 4182 HOH HOH . D 4 HOH A 183 4183 4183 HOH HOH . D 4 HOH A 184 4184 4184 HOH HOH . D 4 HOH A 185 4185 4185 HOH HOH . D 4 HOH A 186 4186 4186 HOH HOH . D 4 HOH A 187 4187 4187 HOH HOH . D 4 HOH A 188 4188 4188 HOH HOH . D 4 HOH A 189 4189 4189 HOH HOH . D 4 HOH A 190 4190 4190 HOH HOH . D 4 HOH A 191 4191 4191 HOH HOH . D 4 HOH A 192 4192 4192 HOH HOH . D 4 HOH A 193 4193 4193 HOH HOH . D 4 HOH A 194 4194 4194 HOH HOH . D 4 HOH A 195 4195 4195 HOH HOH . D 4 HOH A 196 4196 4196 HOH HOH . D 4 HOH A 197 4197 4197 HOH HOH . D 4 HOH A 198 4198 4198 HOH HOH . D 4 HOH A 199 4199 4199 HOH HOH . D 4 HOH A 200 4200 4200 HOH HOH . D 4 HOH A 201 4201 4201 HOH HOH . D 4 HOH A 202 4202 4202 HOH HOH . D 4 HOH A 203 4203 4203 HOH HOH . D 4 HOH A 204 4204 4204 HOH HOH . D 4 HOH A 205 4205 4205 HOH HOH . D 4 HOH A 206 4206 4206 HOH HOH . D 4 HOH A 207 4207 4207 HOH HOH . D 4 HOH A 208 4208 4208 HOH HOH . D 4 HOH A 209 4209 4209 HOH HOH . D 4 HOH A 210 4210 4210 HOH HOH . D 4 HOH A 211 4211 4211 HOH HOH . D 4 HOH A 212 4212 4212 HOH HOH . D 4 HOH A 213 4213 4213 HOH HOH . D 4 HOH A 214 4214 4214 HOH HOH . D 4 HOH A 215 4215 4215 HOH HOH . D 4 HOH A 216 4216 4216 HOH HOH . D 4 HOH A 217 4217 4217 HOH HOH . D 4 HOH A 218 4218 4218 HOH HOH . D 4 HOH A 219 4219 4219 HOH HOH . D 4 HOH A 220 4220 4220 HOH HOH . D 4 HOH A 221 4221 4221 HOH HOH . D 4 HOH A 222 4222 4222 HOH HOH . D 4 HOH A 223 4223 4223 HOH HOH . D 4 HOH A 224 4224 4224 HOH HOH . D 4 HOH A 225 4225 4225 HOH HOH . D 4 HOH A 226 4226 4226 HOH HOH . D 4 HOH A 227 4227 4227 HOH HOH . D 4 HOH A 228 4228 4228 HOH HOH . D 4 HOH A 229 4229 4229 HOH HOH . D 4 HOH A 230 4230 4230 HOH HOH . D 4 HOH A 231 4231 4231 HOH HOH . D 4 HOH A 232 4232 4232 HOH HOH . D 4 HOH A 233 4233 4233 HOH HOH . D 4 HOH A 234 4234 4234 HOH HOH . D 4 HOH A 235 4235 4235 HOH HOH . D 4 HOH A 236 4236 4236 HOH HOH . D 4 HOH A 237 4237 4237 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 8.151 -3.255 -11.722 1 33.22 ? C1 GOL 3001 A 1 HETATM 2 O O1 GOL . . . C 3 9.163 -2.571 -10.957 1 19.63 ? O1 GOL 3001 A 1 HETATM 3 C C2 GOL . . . C 3 6.803 -2.506 -11.511 1 37.3 ? C2 GOL 3001 A 1 HETATM 4 O O2 GOL . . . C 3 6.545 -1.672 -12.664 1 24.1 ? O2 GOL 3001 A 1 HETATM 5 C C3 GOL . . . C 3 5.634 -3.534 -11.454 1 39.93 ? C3 GOL 3001 A 1 HETATM 6 O O3 GOL . . . C 3 5.547 -4.08 -12.786 1 39.14 ? O3 GOL 3001 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #