data_3PBB # _model_server_result.job_id bHw7ZBNKwh8gvdTgvpmNmg _model_server_result.datetime_utc '2024-10-28 14:25:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":391}' # _entry.id 3PBB # _exptl.entry_id 3PBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3PBB _cell.length_a 155.753 _cell.length_b 155.753 _cell.length_c 80.516 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 127 A ASP 159 1_555 D ZN ZN . A ZN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc2 A OE2 GLU 170 A GLU 202 1_555 D ZN ZN . A ZN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc3 A NE2 HIS 298 A HIS 330 1_555 D ZN ZN . A ZN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc4 C NAM PBD . A PBD 380 1_555 D ZN ZN . A ZN 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc5 B OD2 ASP 127 B ASP 159 1_555 F ZN ZN . B ZN 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc6 B OE2 GLU 170 B GLU 202 1_555 F ZN ZN . B ZN 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.88 ? metalc ? metalc7 B NE2 HIS 298 B HIS 330 1_555 F ZN ZN . B ZN 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc8 E NAM PBD . B PBD 381 1_555 F ZN ZN . B ZN 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PBB _atom_sites.fract_transf_matrix[1][1] 0.00642 _atom_sites.fract_transf_matrix[1][2] 0.003707 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007414 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01242 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PBD A 1 380 380 PBD PBD . D 3 ZN A 1 391 391 ZN ZN . E 2 PBD B 1 381 381 PBD PBD . F 3 ZN B 1 392 392 ZN ZN . G 4 HOH A 1 401 401 HOH HOH . G 4 HOH A 2 402 402 HOH HOH . G 4 HOH A 3 404 404 HOH HOH . G 4 HOH A 4 406 406 HOH HOH . G 4 HOH A 5 407 407 HOH HOH . G 4 HOH A 6 409 409 HOH HOH . G 4 HOH A 7 410 410 HOH HOH . G 4 HOH A 8 411 411 HOH HOH . G 4 HOH A 9 412 412 HOH HOH . G 4 HOH A 10 413 413 HOH HOH . G 4 HOH A 11 414 414 HOH HOH . G 4 HOH A 12 416 416 HOH HOH . G 4 HOH A 13 419 419 HOH HOH . G 4 HOH A 14 420 420 HOH HOH . G 4 HOH A 15 421 421 HOH HOH . G 4 HOH A 16 422 422 HOH HOH . G 4 HOH A 17 424 424 HOH HOH . G 4 HOH A 18 426 426 HOH HOH . G 4 HOH A 19 428 428 HOH HOH . G 4 HOH A 20 432 432 HOH HOH . G 4 HOH A 21 436 436 HOH HOH . G 4 HOH A 22 440 440 HOH HOH . G 4 HOH A 23 446 446 HOH HOH . G 4 HOH A 24 447 447 HOH HOH . G 4 HOH A 25 450 450 HOH HOH . G 4 HOH A 26 451 451 HOH HOH . G 4 HOH A 27 454 454 HOH HOH . G 4 HOH A 28 458 458 HOH HOH . G 4 HOH A 29 459 459 HOH HOH . G 4 HOH A 30 462 462 HOH HOH . G 4 HOH A 31 463 463 HOH HOH . G 4 HOH A 32 464 464 HOH HOH . G 4 HOH A 33 469 469 HOH HOH . G 4 HOH A 34 471 471 HOH HOH . G 4 HOH A 35 472 472 HOH HOH . G 4 HOH A 36 474 474 HOH HOH . G 4 HOH A 37 477 477 HOH HOH . G 4 HOH A 38 479 479 HOH HOH . G 4 HOH A 39 481 481 HOH HOH . G 4 HOH A 40 483 483 HOH HOH . G 4 HOH A 41 485 485 HOH HOH . G 4 HOH A 42 486 486 HOH HOH . G 4 HOH A 43 487 487 HOH HOH . G 4 HOH A 44 488 488 HOH HOH . G 4 HOH A 45 489 489 HOH HOH . G 4 HOH A 46 490 490 HOH HOH . G 4 HOH A 47 491 491 HOH HOH . G 4 HOH A 48 492 492 HOH HOH . G 4 HOH A 49 499 499 HOH HOH . G 4 HOH A 50 500 500 HOH HOH . G 4 HOH A 51 503 503 HOH HOH . G 4 HOH A 52 504 504 HOH HOH . G 4 HOH A 53 507 507 HOH HOH . G 4 HOH A 54 511 511 HOH HOH . G 4 HOH A 55 512 512 HOH HOH . G 4 HOH A 56 514 514 HOH HOH . G 4 HOH A 57 516 516 HOH HOH . G 4 HOH A 58 518 518 HOH HOH . G 4 HOH A 59 519 519 HOH HOH . G 4 HOH A 60 520 520 HOH HOH . G 4 HOH A 61 521 521 HOH HOH . G 4 HOH A 62 524 524 HOH HOH . G 4 HOH A 63 526 526 HOH HOH . G 4 HOH A 64 527 527 HOH HOH . G 4 HOH A 65 528 528 HOH HOH . G 4 HOH A 66 530 530 HOH HOH . G 4 HOH A 67 534 534 HOH HOH . G 4 HOH A 68 538 538 HOH HOH . G 4 HOH A 69 539 539 HOH HOH . G 4 HOH A 70 540 540 HOH HOH . G 4 HOH A 71 541 541 HOH HOH . G 4 HOH A 72 542 542 HOH HOH . G 4 HOH A 73 544 544 HOH HOH . G 4 HOH A 74 548 548 HOH HOH . G 4 HOH A 75 550 550 HOH HOH . G 4 HOH A 76 552 552 HOH HOH . G 4 HOH A 77 553 553 HOH HOH . G 4 HOH A 78 555 555 HOH HOH . G 4 HOH A 79 558 558 HOH HOH . G 4 HOH A 80 559 559 HOH HOH . G 4 HOH A 81 562 562 HOH HOH . G 4 HOH A 82 565 565 HOH HOH . G 4 HOH A 83 566 566 HOH HOH . G 4 HOH A 84 567 567 HOH HOH . G 4 HOH A 85 568 568 HOH HOH . G 4 HOH A 86 570 570 HOH HOH . G 4 HOH A 87 571 571 HOH HOH . G 4 HOH A 88 572 572 HOH HOH . G 4 HOH A 89 574 574 HOH HOH . G 4 HOH A 90 576 576 HOH HOH . G 4 HOH A 91 577 577 HOH HOH . G 4 HOH A 92 580 580 HOH HOH . G 4 HOH A 93 581 581 HOH HOH . G 4 HOH A 94 583 583 HOH HOH . G 4 HOH A 95 585 585 HOH HOH . G 4 HOH A 96 590 590 HOH HOH . G 4 HOH A 97 598 598 HOH HOH . G 4 HOH A 98 599 599 HOH HOH . G 4 HOH A 99 600 600 HOH HOH . G 4 HOH A 100 604 604 HOH HOH . G 4 HOH A 101 605 605 HOH HOH . G 4 HOH A 102 606 606 HOH HOH . G 4 HOH A 103 607 607 HOH HOH . G 4 HOH A 104 608 608 HOH HOH . G 4 HOH A 105 610 610 HOH HOH . G 4 HOH A 106 612 612 HOH HOH . G 4 HOH A 107 614 614 HOH HOH . G 4 HOH A 108 617 617 HOH HOH . G 4 HOH A 109 619 619 HOH HOH . G 4 HOH A 110 620 620 HOH HOH . G 4 HOH A 111 621 621 HOH HOH . G 4 HOH A 112 622 622 HOH HOH . G 4 HOH A 113 624 624 HOH HOH . G 4 HOH A 114 626 626 HOH HOH . G 4 HOH A 115 627 627 HOH HOH . G 4 HOH A 116 629 629 HOH HOH . G 4 HOH A 117 631 631 HOH HOH . G 4 HOH A 118 632 632 HOH HOH . G 4 HOH A 119 634 634 HOH HOH . G 4 HOH A 120 636 636 HOH HOH . G 4 HOH A 121 638 638 HOH HOH . G 4 HOH A 122 640 640 HOH HOH . G 4 HOH A 123 642 642 HOH HOH . G 4 HOH A 124 643 643 HOH HOH . G 4 HOH A 125 644 644 HOH HOH . G 4 HOH A 126 645 645 HOH HOH . G 4 HOH A 127 647 647 HOH HOH . G 4 HOH A 128 651 651 HOH HOH . G 4 HOH A 129 652 652 HOH HOH . G 4 HOH A 130 661 661 HOH HOH . G 4 HOH A 131 662 662 HOH HOH . G 4 HOH A 132 664 664 HOH HOH . G 4 HOH A 133 665 665 HOH HOH . G 4 HOH A 134 666 666 HOH HOH . G 4 HOH A 135 672 672 HOH HOH . G 4 HOH A 136 673 673 HOH HOH . G 4 HOH A 137 675 675 HOH HOH . G 4 HOH A 138 678 678 HOH HOH . G 4 HOH A 139 679 679 HOH HOH . G 4 HOH A 140 680 680 HOH HOH . G 4 HOH A 141 681 681 HOH HOH . G 4 HOH A 142 682 682 HOH HOH . H 4 HOH B 1 403 403 HOH HOH . H 4 HOH B 2 405 405 HOH HOH . H 4 HOH B 3 408 408 HOH HOH . H 4 HOH B 4 415 415 HOH HOH . H 4 HOH B 5 417 417 HOH HOH . H 4 HOH B 6 418 418 HOH HOH . H 4 HOH B 7 423 423 HOH HOH . H 4 HOH B 8 425 425 HOH HOH . H 4 HOH B 9 427 427 HOH HOH . H 4 HOH B 10 429 429 HOH HOH . H 4 HOH B 11 430 430 HOH HOH . H 4 HOH B 12 431 431 HOH HOH . H 4 HOH B 13 433 433 HOH HOH . H 4 HOH B 14 434 434 HOH HOH . H 4 HOH B 15 435 435 HOH HOH . H 4 HOH B 16 437 437 HOH HOH . H 4 HOH B 17 438 438 HOH HOH . H 4 HOH B 18 439 439 HOH HOH . H 4 HOH B 19 441 441 HOH HOH . H 4 HOH B 20 442 442 HOH HOH . H 4 HOH B 21 443 443 HOH HOH . H 4 HOH B 22 444 444 HOH HOH . H 4 HOH B 23 445 445 HOH HOH . H 4 HOH B 24 448 448 HOH HOH . H 4 HOH B 25 449 449 HOH HOH . H 4 HOH B 26 452 452 HOH HOH . H 4 HOH B 27 453 453 HOH HOH . H 4 HOH B 28 455 455 HOH HOH . H 4 HOH B 29 456 456 HOH HOH . H 4 HOH B 30 457 457 HOH HOH . H 4 HOH B 31 460 460 HOH HOH . H 4 HOH B 32 461 461 HOH HOH . H 4 HOH B 33 465 465 HOH HOH . H 4 HOH B 34 466 466 HOH HOH . H 4 HOH B 35 467 467 HOH HOH . H 4 HOH B 36 468 468 HOH HOH . H 4 HOH B 37 470 470 HOH HOH . H 4 HOH B 38 473 473 HOH HOH . H 4 HOH B 39 475 475 HOH HOH . H 4 HOH B 40 476 476 HOH HOH . H 4 HOH B 41 478 478 HOH HOH . H 4 HOH B 42 480 480 HOH HOH . H 4 HOH B 43 482 482 HOH HOH . H 4 HOH B 44 484 484 HOH HOH . H 4 HOH B 45 493 493 HOH HOH . H 4 HOH B 46 494 494 HOH HOH . H 4 HOH B 47 495 495 HOH HOH . H 4 HOH B 48 496 496 HOH HOH . H 4 HOH B 49 497 497 HOH HOH . H 4 HOH B 50 498 498 HOH HOH . H 4 HOH B 51 501 501 HOH HOH . H 4 HOH B 52 502 502 HOH HOH . H 4 HOH B 53 505 505 HOH HOH . H 4 HOH B 54 506 506 HOH HOH . H 4 HOH B 55 508 508 HOH HOH . H 4 HOH B 56 509 509 HOH HOH . H 4 HOH B 57 510 510 HOH HOH . H 4 HOH B 58 513 513 HOH HOH . H 4 HOH B 59 515 515 HOH HOH . H 4 HOH B 60 517 517 HOH HOH . H 4 HOH B 61 522 522 HOH HOH . H 4 HOH B 62 523 523 HOH HOH . H 4 HOH B 63 525 525 HOH HOH . H 4 HOH B 64 529 529 HOH HOH . H 4 HOH B 65 531 531 HOH HOH . H 4 HOH B 66 532 532 HOH HOH . H 4 HOH B 67 533 533 HOH HOH . H 4 HOH B 68 535 535 HOH HOH . H 4 HOH B 69 536 536 HOH HOH . H 4 HOH B 70 537 537 HOH HOH . H 4 HOH B 71 543 543 HOH HOH . H 4 HOH B 72 545 545 HOH HOH . H 4 HOH B 73 546 546 HOH HOH . H 4 HOH B 74 547 547 HOH HOH . H 4 HOH B 75 549 549 HOH HOH . H 4 HOH B 76 551 551 HOH HOH . H 4 HOH B 77 554 554 HOH HOH . H 4 HOH B 78 556 556 HOH HOH . H 4 HOH B 79 557 557 HOH HOH . H 4 HOH B 80 560 560 HOH HOH . H 4 HOH B 81 561 561 HOH HOH . H 4 HOH B 82 563 563 HOH HOH . H 4 HOH B 83 564 564 HOH HOH . H 4 HOH B 84 569 569 HOH HOH . H 4 HOH B 85 573 573 HOH HOH . H 4 HOH B 86 575 575 HOH HOH . H 4 HOH B 87 578 578 HOH HOH . H 4 HOH B 88 579 579 HOH HOH . H 4 HOH B 89 582 582 HOH HOH . H 4 HOH B 90 584 584 HOH HOH . H 4 HOH B 91 586 586 HOH HOH . H 4 HOH B 92 587 587 HOH HOH . H 4 HOH B 93 588 588 HOH HOH . H 4 HOH B 94 589 589 HOH HOH . H 4 HOH B 95 591 591 HOH HOH . H 4 HOH B 96 592 592 HOH HOH . H 4 HOH B 97 593 593 HOH HOH . H 4 HOH B 98 594 594 HOH HOH . H 4 HOH B 99 595 595 HOH HOH . H 4 HOH B 100 596 596 HOH HOH . H 4 HOH B 101 597 597 HOH HOH . H 4 HOH B 102 601 601 HOH HOH . H 4 HOH B 103 602 602 HOH HOH . H 4 HOH B 104 603 603 HOH HOH . H 4 HOH B 105 609 609 HOH HOH . H 4 HOH B 106 611 611 HOH HOH . H 4 HOH B 107 613 613 HOH HOH . H 4 HOH B 108 615 615 HOH HOH . H 4 HOH B 109 616 616 HOH HOH . H 4 HOH B 110 618 618 HOH HOH . H 4 HOH B 111 623 623 HOH HOH . H 4 HOH B 112 625 625 HOH HOH . H 4 HOH B 113 628 628 HOH HOH . H 4 HOH B 114 630 630 HOH HOH . H 4 HOH B 115 633 633 HOH HOH . H 4 HOH B 116 635 635 HOH HOH . H 4 HOH B 117 637 637 HOH HOH . H 4 HOH B 118 639 639 HOH HOH . H 4 HOH B 119 641 641 HOH HOH . H 4 HOH B 120 646 646 HOH HOH . H 4 HOH B 121 648 648 HOH HOH . H 4 HOH B 122 649 649 HOH HOH . H 4 HOH B 123 650 650 HOH HOH . H 4 HOH B 124 653 653 HOH HOH . H 4 HOH B 125 654 654 HOH HOH . H 4 HOH B 126 655 655 HOH HOH . H 4 HOH B 127 656 656 HOH HOH . H 4 HOH B 128 657 657 HOH HOH . H 4 HOH B 129 658 658 HOH HOH . H 4 HOH B 130 659 659 HOH HOH . H 4 HOH B 131 660 660 HOH HOH . H 4 HOH B 132 663 663 HOH HOH . H 4 HOH B 133 667 667 HOH HOH . H 4 HOH B 134 668 668 HOH HOH . H 4 HOH B 135 669 669 HOH HOH . H 4 HOH B 136 670 670 HOH HOH . H 4 HOH B 137 671 671 HOH HOH . H 4 HOH B 138 674 674 HOH HOH . H 4 HOH B 139 676 676 HOH HOH . H 4 HOH B 140 677 677 HOH HOH . H 4 HOH B 141 683 683 HOH HOH . H 4 HOH B 142 684 684 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 3 _atom_site.Cartn_x -6.21 _atom_site.Cartn_y 77.863 _atom_site.Cartn_z 1.98 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 391 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #