data_3PBM
#
_model_server_result.job_id            -NZ8YIG80pH-QQJZU6VseQ 
_model_server_result.datetime_utc      '2024-11-25 18:02:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pbm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":328}' 
#
_entry.id    3PBM 
#
_exptl.entry_id    3PBM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              154.557 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            6-chloro-9H-purine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PBM 
_cell.length_a            44.685 
_cell.length_b            74.103 
_cell.length_c            178.215 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PBM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C LEU 230 A LEU 230 1_555 A N MSE 231 A MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale2 A C MSE 231 A MSE 231 1_555 A N ARG 232 A ARG 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
covale ? covale3 A C ASP 256 A ASP 256 1_555 A N MSE 257 A MSE 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale4 A C MSE 257 A MSE 257 1_555 A N SER 258 A SER 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale5 A C ASP 264 A ASP 264 1_555 A N MSE 265 A MSE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale6 A C MSE 265 A MSE 265 1_555 A N LEU 266 A LEU 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale7 A C GLY 298 A GLY 298 1_555 A N MSE 299 A MSE 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale8 A C MSE 299 A MSE 299 1_555 A N THR 300 A THR 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale9 B C LEU 230 B LEU 230 1_555 B N MSE 231 B MSE 231 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale10 B C MSE 231 B MSE 231 1_555 B N ARG 232 B ARG 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale11 B C ASP 256 B ASP 256 1_555 B N MSE 257 B MSE 257 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale12 B C MSE 257 B MSE 257 1_555 B N SER 258 B SER 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale13 B C ASP 264 B ASP 264 1_555 B N MSE 265 B MSE 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale14 B C MSE 265 B MSE 265 1_555 B N LEU 266 B LEU 266 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale15 B C GLY 298 B GLY 298 1_555 B N MSE 299 B MSE 299 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale16 B C MSE 299 B MSE 299 1_555 B N THR 300 B THR 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A NE2 HIS 16 A HIS 16 1_555 C ZN ZN . A ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc2 A NE2 HIS 18 A HIS 18 1_555 C ZN ZN . A ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc3 A NE2 HIS 196 A HIS 196 1_555 C ZN ZN . A ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc4 A OD1 ASP 277 A ASP 277 1_555 C ZN ZN . A ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? 
metalc ? metalc5 B NE2 HIS 16 B HIS 16 1_555 E ZN ZN . B ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc6 B NE2 HIS 18 B HIS 18 1_555 E ZN ZN . B ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc7 B NE2 HIS 196 B HIS 196 1_555 E ZN ZN . B ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc8 B OD1 ASP 277 B ASP 277 1_555 E ZN ZN . B ZN 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
#
_chem_comp.formula           'C5 H3 Cl N4' 
_chem_comp.formula_weight    154.557 
_chem_comp.id                ES4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              6-chloro-9H-purine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C10 C02 ES4 doub 83 n y 
C10 C06 ES4 sing 84 n y 
C10 N09 ES4 sing 85 n y 
CL01 C02 ES4 sing 86 n n 
C02 N03 ES4 sing 87 n y 
N03 C04 ES4 doub 88 n y 
C04 N05 ES4 sing 89 n y 
N05 C06 ES4 doub 90 n y 
C06 N07 ES4 sing 91 n y 
N07 C08 ES4 sing 92 n y 
C08 N09 ES4 doub 93 n y 
C04 H04 ES4 sing 94 n n 
N07 HN07 ES4 sing 95 n n 
C08 H08 ES4 sing 96 n n 
#
_atom_sites.entry_id                     3PBM 
_atom_sites.fract_transf_matrix[1][1]    0.022379 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013495 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005611 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 327 1 ZN ZN . 
D 3 ES4 A 1 328 2 ES4 1NZ . 
E 2 ZN B 1 327 2 ZN ZN . 
F 3 ES4 B 1 328 1 ES4 1NZ . 
G 4 HOH A 1 329 3 HOH HOH . 
G 4 HOH A 2 330 4 HOH HOH . 
G 4 HOH A 3 331 8 HOH HOH . 
G 4 HOH A 4 332 10 HOH HOH . 
G 4 HOH A 5 333 12 HOH HOH . 
G 4 HOH A 6 334 18 HOH HOH . 
G 4 HOH A 7 335 19 HOH HOH . 
G 4 HOH A 8 336 20 HOH HOH . 
G 4 HOH A 9 337 22 HOH HOH . 
G 4 HOH A 10 338 23 HOH HOH . 
G 4 HOH A 11 339 24 HOH HOH . 
G 4 HOH A 12 340 28 HOH HOH . 
G 4 HOH A 13 341 30 HOH HOH . 
G 4 HOH A 14 342 31 HOH HOH . 
G 4 HOH A 15 343 33 HOH HOH . 
G 4 HOH A 16 344 34 HOH HOH . 
G 4 HOH A 17 345 41 HOH HOH . 
G 4 HOH A 18 346 44 HOH HOH . 
G 4 HOH A 19 347 47 HOH HOH . 
G 4 HOH A 20 348 49 HOH HOH . 
G 4 HOH A 21 349 51 HOH HOH . 
G 4 HOH A 22 350 52 HOH HOH . 
G 4 HOH A 23 351 53 HOH HOH . 
G 4 HOH A 24 352 56 HOH HOH . 
G 4 HOH A 25 353 57 HOH HOH . 
G 4 HOH A 26 354 60 HOH HOH . 
G 4 HOH A 27 355 61 HOH HOH . 
G 4 HOH A 28 356 62 HOH HOH . 
G 4 HOH A 29 357 63 HOH HOH . 
G 4 HOH A 30 358 65 HOH HOH . 
G 4 HOH A 31 359 66 HOH HOH . 
G 4 HOH A 32 360 67 HOH HOH . 
G 4 HOH A 33 361 71 HOH HOH . 
G 4 HOH A 34 362 72 HOH HOH . 
G 4 HOH A 35 363 73 HOH HOH . 
G 4 HOH A 36 364 79 HOH HOH . 
G 4 HOH A 37 365 80 HOH HOH . 
G 4 HOH A 38 366 82 HOH HOH . 
G 4 HOH A 39 367 83 HOH HOH . 
G 4 HOH A 40 368 84 HOH HOH . 
G 4 HOH A 41 369 85 HOH HOH . 
G 4 HOH A 42 370 87 HOH HOH . 
G 4 HOH A 43 371 88 HOH HOH . 
G 4 HOH A 44 372 89 HOH HOH . 
G 4 HOH A 45 373 90 HOH HOH . 
G 4 HOH A 46 374 91 HOH HOH . 
G 4 HOH A 47 375 92 HOH HOH . 
G 4 HOH A 48 376 93 HOH HOH . 
G 4 HOH A 49 377 95 HOH HOH . 
G 4 HOH A 50 378 96 HOH HOH . 
G 4 HOH A 51 379 97 HOH HOH . 
G 4 HOH A 52 380 98 HOH HOH . 
G 4 HOH A 53 381 119 HOH HOH . 
G 4 HOH A 54 382 120 HOH HOH . 
G 4 HOH A 55 383 121 HOH HOH . 
G 4 HOH A 56 384 122 HOH HOH . 
G 4 HOH A 57 385 123 HOH HOH . 
G 4 HOH A 58 386 124 HOH HOH . 
G 4 HOH A 59 387 125 HOH HOH . 
G 4 HOH A 60 388 126 HOH HOH . 
G 4 HOH A 61 389 127 HOH HOH . 
G 4 HOH A 62 390 128 HOH HOH . 
G 4 HOH A 63 391 129 HOH HOH . 
G 4 HOH A 64 392 130 HOH HOH . 
G 4 HOH A 65 393 132 HOH HOH . 
H 4 HOH B 1 329 1 HOH HOH . 
H 4 HOH B 2 330 2 HOH HOH . 
H 4 HOH B 3 331 5 HOH HOH . 
H 4 HOH B 4 332 6 HOH HOH . 
H 4 HOH B 5 333 7 HOH HOH . 
H 4 HOH B 6 334 9 HOH HOH . 
H 4 HOH B 7 335 11 HOH HOH . 
H 4 HOH B 8 336 13 HOH HOH . 
H 4 HOH B 9 337 14 HOH HOH . 
H 4 HOH B 10 338 15 HOH HOH . 
H 4 HOH B 11 339 16 HOH HOH . 
H 4 HOH B 12 340 17 HOH HOH . 
H 4 HOH B 13 341 21 HOH HOH . 
H 4 HOH B 14 342 25 HOH HOH . 
H 4 HOH B 15 343 26 HOH HOH . 
H 4 HOH B 16 344 27 HOH HOH . 
H 4 HOH B 17 345 29 HOH HOH . 
H 4 HOH B 18 346 32 HOH HOH . 
H 4 HOH B 19 347 35 HOH HOH . 
H 4 HOH B 20 348 36 HOH HOH . 
H 4 HOH B 21 349 37 HOH HOH . 
H 4 HOH B 22 350 38 HOH HOH . 
H 4 HOH B 23 351 39 HOH HOH . 
H 4 HOH B 24 352 40 HOH HOH . 
H 4 HOH B 25 353 42 HOH HOH . 
H 4 HOH B 26 354 43 HOH HOH . 
H 4 HOH B 27 355 45 HOH HOH . 
H 4 HOH B 28 356 46 HOH HOH . 
H 4 HOH B 29 357 48 HOH HOH . 
H 4 HOH B 30 358 50 HOH HOH . 
H 4 HOH B 31 359 54 HOH HOH . 
H 4 HOH B 32 360 55 HOH HOH . 
H 4 HOH B 33 361 58 HOH HOH . 
H 4 HOH B 34 362 59 HOH HOH . 
H 4 HOH B 35 363 64 HOH HOH . 
H 4 HOH B 36 364 68 HOH HOH . 
H 4 HOH B 37 365 69 HOH HOH . 
H 4 HOH B 38 366 70 HOH HOH . 
H 4 HOH B 39 367 74 HOH HOH . 
H 4 HOH B 40 368 75 HOH HOH . 
H 4 HOH B 41 369 76 HOH HOH . 
H 4 HOH B 42 370 77 HOH HOH . 
H 4 HOH B 43 371 78 HOH HOH . 
H 4 HOH B 44 372 81 HOH HOH . 
H 4 HOH B 45 373 86 HOH HOH . 
H 4 HOH B 46 374 94 HOH HOH . 
H 4 HOH B 47 375 99 HOH HOH . 
H 4 HOH B 48 376 100 HOH HOH . 
H 4 HOH B 49 377 101 HOH HOH . 
H 4 HOH B 50 378 102 HOH HOH . 
H 4 HOH B 51 379 103 HOH HOH . 
H 4 HOH B 52 380 104 HOH HOH . 
H 4 HOH B 53 381 105 HOH HOH . 
H 4 HOH B 54 382 106 HOH HOH . 
H 4 HOH B 55 383 107 HOH HOH . 
H 4 HOH B 56 384 108 HOH HOH . 
H 4 HOH B 57 385 109 HOH HOH . 
H 4 HOH B 58 386 110 HOH HOH . 
H 4 HOH B 59 387 111 HOH HOH . 
H 4 HOH B 60 388 112 HOH HOH . 
H 4 HOH B 61 389 113 HOH HOH . 
H 4 HOH B 62 390 114 HOH HOH . 
H 4 HOH B 63 391 115 HOH HOH . 
H 4 HOH B 64 392 116 HOH HOH . 
H 4 HOH B 65 393 117 HOH HOH . 
H 4 HOH B 66 394 118 HOH HOH . 
H 4 HOH B 67 395 131 HOH HOH . 
H 4 HOH B 68 396 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 ES4 . . . D 3 22.257 69.071 61.62 1 17.99 ? C10 ES4 328 A 1 
HETATM 2 CL CL01 ES4 . . . D 3 21.739 69.111 59.068 1 31.06 ? CL01 ES4 328 A 1 
HETATM 3 C C02 ES4 . . . D 3 22.608 69.58 60.408 1 20.14 ? C02 ES4 328 A 1 
HETATM 4 N N03 ES4 . . . D 3 23.64 70.484 60.281 1 20.15 ? N03 ES4 328 A 1 
HETATM 5 C C04 ES4 . . . D 3 24.351 70.877 61.429 1 20.17 ? C04 ES4 328 A 1 
HETATM 6 N N05 ES4 . . . D 3 24.001 70.358 62.62 1 24.3 ? N05 ES4 328 A 1 
HETATM 7 C C06 ES4 . . . D 3 22.95 69.448 62.739 1 17.48 ? C06 ES4 328 A 1 
HETATM 8 N N07 ES4 . . . D 3 22.389 68.759 63.887 1 17.77 ? N07 ES4 328 A 1 
HETATM 9 C C08 ES4 . . . D 3 21.301 67.932 63.417 1 19.5 ? C08 ES4 328 A 1 
HETATM 10 N N09 ES4 . . . D 3 21.211 68.122 61.987 1 18.52 ? N09 ES4 328 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           30 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           10 
#