data_3PBX # _model_server_result.job_id WfJkWusaKtzmP2C9IMs1yA _model_server_result.datetime_utc '2024-10-10 16:31:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pbx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":22}' # _entry.id 3PBX # _exptl.entry_id 3PBX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 87.62 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'STRONTIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.01 _cell.angle_gamma 90 _cell.entry_id 3PBX _cell.length_a 64.89 _cell.length_b 25.001 _cell.length_c 37.044 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PBX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -12.675869 0 34.807762 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C SR SR . B SR 22 1_555 F O HOH . B HOH 69 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.798 ? metalc ? metalc2 D NA NA . B NA 27 1_555 F O HOH . B HOH 42 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc3 D NA NA . B NA 27 1_555 F O HOH . B HOH 43 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 10 B DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 9 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 DG 3 A DG 3 1_555 B N3 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N2 DG 3 A DG 3 1_555 B O2 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O6 DG 3 A DG 3 1_555 B N4 DC 8 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 7 B DC 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 DC 5 A DC 5 1_555 B N1 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 DC 5 A DC 5 1_555 B O6 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 DC 5 A DC 5 1_555 B N2 DG 6 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 DG 6 A DG 6 1_555 B N3 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 DG 6 A DG 6 1_555 B O2 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 DG 6 A DG 6 1_555 B N4 DC 5 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Sr 2' _chem_comp.formula_weight 87.62 _chem_comp.id SR _chem_comp.mon_nstd_flag . _chem_comp.name 'STRONTIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3PBX _atom_sites.fract_transf_matrix[1][1] 0.015411 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005611 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.039998 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SR B 1 22 22 SR SR . D 3 NA B 1 27 27 NA NA . E 4 HOH A 1 21 21 HOH HOH . E 4 HOH A 2 23 23 HOH HOH . E 4 HOH A 3 24 24 HOH HOH . E 4 HOH A 4 30 30 HOH HOH . E 4 HOH A 5 31 31 HOH HOH . E 4 HOH A 6 34 34 HOH HOH . E 4 HOH A 7 35 35 HOH HOH . E 4 HOH A 8 36 36 HOH HOH . E 4 HOH A 9 38 38 HOH HOH . E 4 HOH A 10 39 39 HOH HOH . E 4 HOH A 11 48 48 HOH HOH . E 4 HOH A 12 53 53 HOH HOH . E 4 HOH A 13 57 57 HOH HOH . E 4 HOH A 14 62 62 HOH HOH . E 4 HOH A 15 66 66 HOH HOH . E 4 HOH A 16 67 67 HOH HOH . E 4 HOH A 17 70 70 HOH HOH . E 4 HOH A 18 74 74 HOH HOH . F 4 HOH B 1 26 26 HOH HOH . F 4 HOH B 2 28 28 HOH HOH . F 4 HOH B 3 29 29 HOH HOH . F 4 HOH B 4 32 32 HOH HOH . F 4 HOH B 5 37 37 HOH HOH . F 4 HOH B 6 40 40 HOH HOH . F 4 HOH B 7 41 41 HOH HOH . F 4 HOH B 8 42 42 HOH HOH . F 4 HOH B 9 43 43 HOH HOH . F 4 HOH B 10 44 44 HOH HOH . F 4 HOH B 11 45 45 HOH HOH . F 4 HOH B 12 46 46 HOH HOH . F 4 HOH B 13 47 47 HOH HOH . F 4 HOH B 14 49 49 HOH HOH . F 4 HOH B 15 50 50 HOH HOH . F 4 HOH B 16 51 51 HOH HOH . F 4 HOH B 17 52 52 HOH HOH . F 4 HOH B 18 54 54 HOH HOH . F 4 HOH B 19 55 55 HOH HOH . F 4 HOH B 20 56 56 HOH HOH . F 4 HOH B 21 59 59 HOH HOH . F 4 HOH B 22 60 60 HOH HOH . F 4 HOH B 23 61 61 HOH HOH . F 4 HOH B 24 63 63 HOH HOH . F 4 HOH B 25 64 64 HOH HOH . F 4 HOH B 26 65 65 HOH HOH . F 4 HOH B 27 68 68 HOH HOH . F 4 HOH B 28 69 69 HOH HOH . F 4 HOH B 29 71 71 HOH HOH . F 4 HOH B 30 72 72 HOH HOH . F 4 HOH B 31 73 73 HOH HOH . F 4 HOH B 32 75 75 HOH HOH . F 4 HOH B 33 76 76 HOH HOH . F 4 HOH B 34 77 77 HOH HOH . F 4 HOH B 35 78 78 HOH HOH . F 4 HOH B 36 79 79 HOH HOH . F 4 HOH B 37 80 80 HOH HOH . F 4 HOH B 38 81 81 HOH HOH . F 4 HOH B 39 82 82 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol SR _atom_site.label_atom_id SR _atom_site.label_comp_id SR _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.341 _atom_site.Cartn_y 1.968 _atom_site.Cartn_z 29.802 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 28.45 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id SR _atom_site.auth_comp_id SR _atom_site.auth_seq_id 22 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #