data_3PBZ # _model_server_result.job_id RuboR4SEfnbpUj_gT8gZ4Q _model_server_result.datetime_utc '2024-11-24 20:41:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3pbz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":4002}' # _entry.id 3PBZ # _exptl.entry_id 3PBZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.2 _cell.angle_gamma 90 _cell.entry_id 3PBZ _cell.length_a 45.14 _cell.length_b 73.25 _cell.length_c 52.37 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3PBZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 83 n n S C1 DMS sing 84 n n S C2 DMS sing 85 n n C1 H11 DMS sing 86 n n C1 H12 DMS sing 87 n n C1 H13 DMS sing 88 n n C2 H21 DMS sing 89 n n C2 H22 DMS sing 90 n n C2 H23 DMS sing 91 n n # _atom_sites.entry_id 3PBZ _atom_sites.fract_transf_matrix[1][1] 0.022153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007715 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013652 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 F02 A 1 1001 1001 F02 F02 . C 3 GOL A 1 3001 3001 GOL GOL . D 4 DMS A 1 4001 4001 DMS DMS . E 4 DMS A 1 4002 4002 DMS DMS . F 5 HOH A 1 7001 7001 HOH HOH . F 5 HOH A 2 7002 7002 HOH HOH . F 5 HOH A 3 7003 7003 HOH HOH . F 5 HOH A 4 7004 7004 HOH HOH . F 5 HOH A 5 7005 7005 HOH HOH . F 5 HOH A 6 7006 7006 HOH HOH . F 5 HOH A 7 7007 7007 HOH HOH . F 5 HOH A 8 7008 7008 HOH HOH . F 5 HOH A 9 7009 7009 HOH HOH . F 5 HOH A 10 7010 7010 HOH HOH . F 5 HOH A 11 7011 7011 HOH HOH . F 5 HOH A 12 7012 7012 HOH HOH . F 5 HOH A 13 7013 7013 HOH HOH . F 5 HOH A 14 7014 7014 HOH HOH . F 5 HOH A 15 7015 7015 HOH HOH . F 5 HOH A 16 7016 7016 HOH HOH . F 5 HOH A 17 7017 7017 HOH HOH . F 5 HOH A 18 7018 7018 HOH HOH . F 5 HOH A 19 7019 7019 HOH HOH . F 5 HOH A 20 7020 7020 HOH HOH . F 5 HOH A 21 7021 7021 HOH HOH . F 5 HOH A 22 7022 7022 HOH HOH . F 5 HOH A 23 7023 7023 HOH HOH . F 5 HOH A 24 7024 7024 HOH HOH . F 5 HOH A 25 7025 7025 HOH HOH . F 5 HOH A 26 7026 7026 HOH HOH . F 5 HOH A 27 7027 7027 HOH HOH . F 5 HOH A 28 7028 7028 HOH HOH . F 5 HOH A 29 7029 7029 HOH HOH . F 5 HOH A 30 7030 7030 HOH HOH . F 5 HOH A 31 7031 7031 HOH HOH . F 5 HOH A 32 7032 7032 HOH HOH . F 5 HOH A 33 7033 7033 HOH HOH . F 5 HOH A 34 7034 7034 HOH HOH . F 5 HOH A 35 7035 7035 HOH HOH . F 5 HOH A 36 7036 7036 HOH HOH . F 5 HOH A 37 7037 7037 HOH HOH . F 5 HOH A 38 7038 7038 HOH HOH . F 5 HOH A 39 7039 7039 HOH HOH . F 5 HOH A 40 7040 7040 HOH HOH . F 5 HOH A 41 7041 7041 HOH HOH . F 5 HOH A 42 7042 7042 HOH HOH . F 5 HOH A 43 7043 7043 HOH HOH . F 5 HOH A 44 7044 7044 HOH HOH . F 5 HOH A 45 7045 7045 HOH HOH . F 5 HOH A 46 7046 7046 HOH HOH . F 5 HOH A 47 7047 7047 HOH HOH . F 5 HOH A 48 7048 7048 HOH HOH . F 5 HOH A 49 7049 7049 HOH HOH . F 5 HOH A 50 7050 7050 HOH HOH . F 5 HOH A 51 7051 7051 HOH HOH . F 5 HOH A 52 7052 7052 HOH HOH . F 5 HOH A 53 7053 7053 HOH HOH . F 5 HOH A 54 7054 7054 HOH HOH . F 5 HOH A 55 7055 7055 HOH HOH . F 5 HOH A 56 7056 7056 HOH HOH . F 5 HOH A 57 7057 7057 HOH HOH . F 5 HOH A 58 7058 7058 HOH HOH . F 5 HOH A 59 7059 7059 HOH HOH . F 5 HOH A 60 7060 7060 HOH HOH . F 5 HOH A 61 7061 7061 HOH HOH . F 5 HOH A 62 7062 7062 HOH HOH . F 5 HOH A 63 7063 7063 HOH HOH . F 5 HOH A 64 7064 7064 HOH HOH . F 5 HOH A 65 7065 7065 HOH HOH . F 5 HOH A 66 7066 7066 HOH HOH . F 5 HOH A 67 7067 7067 HOH HOH . F 5 HOH A 68 7068 7068 HOH HOH . F 5 HOH A 69 7069 7069 HOH HOH . F 5 HOH A 70 7070 7070 HOH HOH . F 5 HOH A 71 7071 7071 HOH HOH . F 5 HOH A 72 7072 7072 HOH HOH . F 5 HOH A 73 7073 7073 HOH HOH . F 5 HOH A 74 7074 7074 HOH HOH . F 5 HOH A 75 7075 7075 HOH HOH . F 5 HOH A 76 7076 7076 HOH HOH . F 5 HOH A 77 7077 7077 HOH HOH . F 5 HOH A 78 7078 7078 HOH HOH . F 5 HOH A 79 7079 7079 HOH HOH . F 5 HOH A 80 7080 7080 HOH HOH . F 5 HOH A 81 7081 7081 HOH HOH . F 5 HOH A 82 7082 7082 HOH HOH . F 5 HOH A 83 7083 7083 HOH HOH . F 5 HOH A 84 7084 7084 HOH HOH . F 5 HOH A 85 7085 7085 HOH HOH . F 5 HOH A 86 7086 7086 HOH HOH . F 5 HOH A 87 7087 7087 HOH HOH . F 5 HOH A 88 7088 7088 HOH HOH . F 5 HOH A 89 7089 7089 HOH HOH . F 5 HOH A 90 7090 7090 HOH HOH . F 5 HOH A 91 7091 7091 HOH HOH . F 5 HOH A 92 7092 7092 HOH HOH . F 5 HOH A 93 7093 7093 HOH HOH . F 5 HOH A 94 7094 7094 HOH HOH . F 5 HOH A 95 7095 7095 HOH HOH . F 5 HOH A 96 7096 7096 HOH HOH . F 5 HOH A 97 7097 7097 HOH HOH . F 5 HOH A 98 7098 7098 HOH HOH . F 5 HOH A 99 7099 7099 HOH HOH . F 5 HOH A 100 7100 7100 HOH HOH . F 5 HOH A 101 7101 7101 HOH HOH . F 5 HOH A 102 7102 7102 HOH HOH . F 5 HOH A 103 7103 7103 HOH HOH . F 5 HOH A 104 7104 7104 HOH HOH . F 5 HOH A 105 7105 7105 HOH HOH . F 5 HOH A 106 7106 7106 HOH HOH . F 5 HOH A 107 7107 7107 HOH HOH . F 5 HOH A 108 7108 7108 HOH HOH . F 5 HOH A 109 7109 7109 HOH HOH . F 5 HOH A 110 7110 7110 HOH HOH . F 5 HOH A 111 7111 7111 HOH HOH . F 5 HOH A 112 7112 7112 HOH HOH . F 5 HOH A 113 7113 7113 HOH HOH . F 5 HOH A 114 7114 7114 HOH HOH . F 5 HOH A 115 7115 7115 HOH HOH . F 5 HOH A 116 7116 7116 HOH HOH . F 5 HOH A 117 7117 7117 HOH HOH . F 5 HOH A 118 7118 7118 HOH HOH . F 5 HOH A 119 7119 7119 HOH HOH . F 5 HOH A 120 7120 7120 HOH HOH . F 5 HOH A 121 7121 7121 HOH HOH . F 5 HOH A 122 7122 7122 HOH HOH . F 5 HOH A 123 7123 7123 HOH HOH . F 5 HOH A 124 7124 7124 HOH HOH . F 5 HOH A 125 7125 7125 HOH HOH . F 5 HOH A 126 7126 7126 HOH HOH . F 5 HOH A 127 7127 7127 HOH HOH . F 5 HOH A 128 7128 7128 HOH HOH . F 5 HOH A 129 7129 7129 HOH HOH . F 5 HOH A 130 7130 7130 HOH HOH . F 5 HOH A 131 7131 7131 HOH HOH . F 5 HOH A 132 7132 7132 HOH HOH . F 5 HOH A 133 7133 7133 HOH HOH . F 5 HOH A 134 7134 7134 HOH HOH . F 5 HOH A 135 7135 7135 HOH HOH . F 5 HOH A 136 7136 7136 HOH HOH . F 5 HOH A 137 7137 7137 HOH HOH . F 5 HOH A 138 7138 7138 HOH HOH . F 5 HOH A 139 7139 7139 HOH HOH . F 5 HOH A 140 7140 7140 HOH HOH . F 5 HOH A 141 7141 7141 HOH HOH . F 5 HOH A 142 7142 7142 HOH HOH . F 5 HOH A 143 7143 7143 HOH HOH . F 5 HOH A 144 7144 7144 HOH HOH . F 5 HOH A 145 7145 7145 HOH HOH . F 5 HOH A 146 7146 7146 HOH HOH . F 5 HOH A 147 7147 7147 HOH HOH . F 5 HOH A 148 7148 7148 HOH HOH . F 5 HOH A 149 7149 7149 HOH HOH . F 5 HOH A 150 7150 7150 HOH HOH . F 5 HOH A 151 7151 7151 HOH HOH . F 5 HOH A 152 7152 7152 HOH HOH . F 5 HOH A 153 7153 7153 HOH HOH . F 5 HOH A 154 7154 7154 HOH HOH . F 5 HOH A 155 7155 7155 HOH HOH . F 5 HOH A 156 7156 7156 HOH HOH . F 5 HOH A 157 7157 7157 HOH HOH . F 5 HOH A 158 7158 7158 HOH HOH . F 5 HOH A 159 7159 7159 HOH HOH . F 5 HOH A 160 7160 7160 HOH HOH . F 5 HOH A 161 7161 7161 HOH HOH . F 5 HOH A 162 7162 7162 HOH HOH . F 5 HOH A 163 7163 7163 HOH HOH . F 5 HOH A 164 7164 7164 HOH HOH . F 5 HOH A 165 7165 7165 HOH HOH . F 5 HOH A 166 7166 7166 HOH HOH . F 5 HOH A 167 7167 7167 HOH HOH . F 5 HOH A 168 7168 7168 HOH HOH . F 5 HOH A 169 7169 7169 HOH HOH . F 5 HOH A 170 7170 7170 HOH HOH . F 5 HOH A 171 7171 7171 HOH HOH . F 5 HOH A 172 7172 7172 HOH HOH . F 5 HOH A 173 7173 7173 HOH HOH . F 5 HOH A 174 7174 7174 HOH HOH . F 5 HOH A 175 7175 7175 HOH HOH . F 5 HOH A 176 7176 7176 HOH HOH . F 5 HOH A 177 7177 7177 HOH HOH . F 5 HOH A 178 7178 7178 HOH HOH . F 5 HOH A 179 7179 7179 HOH HOH . F 5 HOH A 180 7180 7180 HOH HOH . F 5 HOH A 181 7181 7181 HOH HOH . F 5 HOH A 182 7182 7182 HOH HOH . F 5 HOH A 183 7183 7183 HOH HOH . F 5 HOH A 184 7184 7184 HOH HOH . F 5 HOH A 185 7185 7185 HOH HOH . F 5 HOH A 186 7186 7186 HOH HOH . F 5 HOH A 187 7187 7187 HOH HOH . F 5 HOH A 188 7188 7188 HOH HOH . F 5 HOH A 189 7189 7189 HOH HOH . F 5 HOH A 190 7190 7190 HOH HOH . F 5 HOH A 191 7191 7191 HOH HOH . F 5 HOH A 192 7192 7192 HOH HOH . F 5 HOH A 193 7193 7193 HOH HOH . F 5 HOH A 194 7194 7194 HOH HOH . F 5 HOH A 195 7195 7195 HOH HOH . F 5 HOH A 196 7196 7196 HOH HOH . F 5 HOH A 197 7197 7197 HOH HOH . F 5 HOH A 198 7198 7198 HOH HOH . F 5 HOH A 199 7199 7199 HOH HOH . F 5 HOH A 200 7200 7200 HOH HOH . F 5 HOH A 201 7201 7201 HOH HOH . F 5 HOH A 202 7202 7202 HOH HOH . F 5 HOH A 203 7203 7203 HOH HOH . F 5 HOH A 204 7204 7204 HOH HOH . F 5 HOH A 205 7205 7205 HOH HOH . F 5 HOH A 206 7206 7206 HOH HOH . F 5 HOH A 207 7207 7207 HOH HOH . F 5 HOH A 208 7208 7208 HOH HOH . F 5 HOH A 209 7209 7209 HOH HOH . F 5 HOH A 210 7210 7210 HOH HOH . F 5 HOH A 211 7211 7211 HOH HOH . F 5 HOH A 212 7212 7212 HOH HOH . F 5 HOH A 213 7213 7213 HOH HOH . F 5 HOH A 214 7214 7214 HOH HOH . F 5 HOH A 215 7215 7215 HOH HOH . F 5 HOH A 216 7216 7216 HOH HOH . F 5 HOH A 217 7217 7217 HOH HOH . F 5 HOH A 218 7218 7218 HOH HOH . F 5 HOH A 219 7219 7219 HOH HOH . F 5 HOH A 220 7220 7220 HOH HOH . F 5 HOH A 221 7221 7221 HOH HOH . F 5 HOH A 222 7222 7222 HOH HOH . F 5 HOH A 223 7223 7223 HOH HOH . F 5 HOH A 224 7224 7224 HOH HOH . F 5 HOH A 225 7225 7225 HOH HOH . F 5 HOH A 226 7226 7226 HOH HOH . F 5 HOH A 227 7227 7227 HOH HOH . F 5 HOH A 228 7228 7228 HOH HOH . F 5 HOH A 229 7229 7229 HOH HOH . F 5 HOH A 230 7230 7230 HOH HOH . F 5 HOH A 231 7231 7231 HOH HOH . F 5 HOH A 232 7232 7232 HOH HOH . F 5 HOH A 233 7233 7233 HOH HOH . F 5 HOH A 234 7234 7234 HOH HOH . F 5 HOH A 235 7235 7235 HOH HOH . F 5 HOH A 236 7236 7236 HOH HOH . F 5 HOH A 237 7237 7237 HOH HOH . F 5 HOH A 238 7238 7238 HOH HOH . F 5 HOH A 239 7239 7239 HOH HOH . F 5 HOH A 240 7240 7240 HOH HOH . F 5 HOH A 241 7241 7241 HOH HOH . F 5 HOH A 242 7242 7242 HOH HOH . F 5 HOH A 243 7243 7243 HOH HOH . F 5 HOH A 244 7244 7244 HOH HOH . F 5 HOH A 245 7245 7245 HOH HOH . F 5 HOH A 246 7246 7246 HOH HOH . F 5 HOH A 247 7247 7247 HOH HOH . F 5 HOH A 248 7248 7248 HOH HOH . F 5 HOH A 249 7249 7249 HOH HOH . F 5 HOH A 250 7250 7250 HOH HOH . F 5 HOH A 251 7251 7251 HOH HOH . F 5 HOH A 252 7252 7252 HOH HOH . F 5 HOH A 253 7253 7253 HOH HOH . F 5 HOH A 254 7254 7254 HOH HOH . F 5 HOH A 255 7255 7255 HOH HOH . F 5 HOH A 256 7256 7256 HOH HOH . F 5 HOH A 257 7257 7257 HOH HOH . F 5 HOH A 258 7258 7258 HOH HOH . F 5 HOH A 259 7259 7259 HOH HOH . F 5 HOH A 260 7260 7260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . A . E 4 -20.84 -2.02 2.195 0.56 22.35 ? S DMS 4002 A 1 HETATM 2 S S DMS . B . E 4 -20.625 -0.779 2.274 0.44 25.29 ? S DMS 4002 A 1 HETATM 3 O O DMS . A . E 4 -19.819 -1.594 1.165 0.56 26.34 ? O DMS 4002 A 1 HETATM 4 O O DMS . B . E 4 -19.482 -1.468 1.543 0.44 25.48 ? O DMS 4002 A 1 HETATM 5 C C1 DMS . A . E 4 -22.295 -1.022 2.007 0.56 21.91 ? C1 DMS 4002 A 1 HETATM 6 C C1 DMS . B . E 4 -20.718 -1.522 3.895 0.44 19.94 ? C1 DMS 4002 A 1 HETATM 7 C C2 DMS . A . E 4 -20.302 -1.45 3.807 0.56 26.9 ? C2 DMS 4002 A 1 HETATM 8 C C2 DMS . B . E 4 -22.158 -1.455 1.62 0.44 24.21 ? C2 DMS 4002 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 440 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #