data_3PCO
#
_model_server_result.job_id            YJkXVvihUrc3KATmAT_R2Q 
_model_server_result.datetime_utc      '2025-02-05 06:48:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3pco 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":999}' 
#
_entry.id    3PCO 
#
_exptl.entry_id    3PCO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3PCO 
_cell.length_a            65.547 
_cell.length_b            178.936 
_cell.length_c            254.417 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3PCO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 H N N 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     3PCO 
_atom_sites.fract_transf_matrix[1][1]    0.015256 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005589 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003931 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 PHE A 1 980 980 PHE PHE . 
F 4 AMP A 1 992 992 AMP AMP . 
G 3 PHE C 1 990 990 PHE PHE . 
H 4 AMP C 1 999 999 AMP AMP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . H 4 -42.649 -10.023 104.463 1 138.5 ? P AMP 999 C 1 
HETATM 2 O O1P AMP . . . H 4 -41.82 -11.413 104.677 1 137.47 ? O1P AMP 999 C 1 
HETATM 3 O O2P AMP . . . H 4 -43.338 -9.545 105.677 1 138.96 ? O2P AMP 999 C 1 
HETATM 4 O O3P AMP . . . H 4 -41.578 -8.904 103.997 1 138.24 ? O3P AMP 999 C 1 
HETATM 5 O O5' AMP . . . H 4 -43.73 -10.222 103.283 1 140.37 ? O5' AMP 999 C 1 
HETATM 6 C C5' AMP . . . H 4 -43.659 -11.269 102.292 1 142.58 ? C5' AMP 999 C 1 
HETATM 7 C C4' AMP . . . H 4 -44.634 -10.975 101.124 1 144 ? C4' AMP 999 C 1 
HETATM 8 O O4' AMP . . . H 4 -45.101 -9.644 101.367 1 145.21 ? O4' AMP 999 C 1 
HETATM 9 C C3' AMP . . . H 4 -43.909 -10.927 99.78 1 144.56 ? C3' AMP 999 C 1 
HETATM 10 O O3' AMP . . . H 4 -44.222 -12.096 99.034 1 145.28 ? O3' AMP 999 C 1 
HETATM 11 C C2' AMP . . . H 4 -44.431 -9.683 99.057 1 145.02 ? C2' AMP 999 C 1 
HETATM 12 O O2' AMP . . . H 4 -45.239 -10.041 97.927 1 144.83 ? O2' AMP 999 C 1 
HETATM 13 C C1' AMP . . . H 4 -45.314 -8.974 100.091 1 145.85 ? C1' AMP 999 C 1 
HETATM 14 N N9 AMP . . . H 4 -45.079 -7.496 100.349 1 146.97 ? N9 AMP 999 C 1 
HETATM 15 C C8 AMP . . . H 4 -45.875 -6.741 101.124 1 147.09 ? C8 AMP 999 C 1 
HETATM 16 N N7 AMP . . . H 4 -45.424 -5.488 101.154 1 147.19 ? N7 AMP 999 C 1 
HETATM 17 C C5 AMP . . . H 4 -44.328 -5.439 100.399 1 147.11 ? C5 AMP 999 C 1 
HETATM 18 C C6 AMP . . . H 4 -43.445 -4.421 100.064 1 146.8 ? C6 AMP 999 C 1 
HETATM 19 N N6 AMP . . . H 4 -43.632 -3.194 100.543 1 146.8 ? N6 AMP 999 C 1 
HETATM 20 N N1 AMP . . . H 4 -42.405 -4.692 99.256 1 146.5 ? N1 AMP 999 C 1 
HETATM 21 C C2 AMP . . . H 4 -42.216 -5.913 98.775 1 146.71 ? C2 AMP 999 C 1 
HETATM 22 N N3 AMP . . . H 4 -43.039 -6.908 99.073 1 146.86 ? N3 AMP 999 C 1 
HETATM 23 C C4 AMP . . . H 4 -44.1 -6.708 99.883 1 147.04 ? C4 AMP 999 C 1 
#
_model_server_stats.io_time_ms              34 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           23 
#